TCONS_00056328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056328
Unique NameTCONS_00056328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056328 ID=TCONS_00056328|Name=TCONS_00056328|organism=Clytia hemisphaerica|type=transcript|length=1788bp
actatggaataactgcaagggtggtggtgtctgtagaaaatgtccaaaat
tgcagttactccacatagtgtcaaggagtaactgcaagacccccctGTTG
ATAACAATAAATACATACTTTAAAGATGAGGAAAGAGACTTTCTTTTACT
CCGAAATTTGAATCAGATTGTTCTTTTTTaaccaaatgttttgattttcc
agcCACAGCTATAGTAAATAGTTTCAAAATCATCGATTCTATATACAAAG
ACAAAATGAAGCTAAAAGAACTGCAGAGCTATTTGCAACAAGTGGAAGGG
TTTGATGATCCAAAAGTGCATTTGGAACAATACGTCACTTCAGGTCATAT
TGCGTCACACATGCTGTACACCATGAGCCAAACTTTTGATGACATTGCAA
ATAACATTGTAGCGGACTTTGGATGTGGCTGTGGAGTACTTTCAATTGGT
TCAGCTATGCTTGATGCTGGTCAAGTTTTCAGTTTTGACGTCGATTCTGA
TGCATTAGAGATATGCCAAAGTAATGTGGATGATTTTGATGTCACATCAA
CTGTAGAGTTAATCTCCTGTGATTTGATGCAGAGCTCCACGATGTTAGAT
TATTTGACGGAAAGGCGCTACATTGATACTGTGGTGATGAATCCACCCTT
TGGGACCAAAAACAATAAAGGCATTGACATGTACTTCTTACAAAAAGCTA
TCTCGATTGCAAACAATGCTGTCTATTCACTTCACAAAACCTCTACCCGA
AGTCACGTGATCAAAAAAGCTGAAGAGATGAATTGCACAGTAGAAGTGTT
GGCAGAATTGAGGTACGATTTACCAAAGACCTATAAATTTCATAAGAAAC
AAAGTTTAGATGTACAAGTGGATTTCATTCGTTGTCAACCGAACAGataa
gtttgattttttatgcaACTTCAGAATTCTGAGATAGAGTTTGATGGGAA
TCGGATCCATTACAAAGGTTGATGAttccaagctggcacacaatgttgtt
ttaacgttcatctaacgacaacgttgttttaacgttcatcaaACGTCTTA
TGAATGTTAGGGACTTCAGATGAATGCTGTTACGACGTTCTGTGCCACCA
TCTGGGATTGTAAAACTCAGAATCACGTTGGAAATTATGTTTTACATGTC
CTATCACATTTGAGTATAAAACCGCATAAGGATTATGGGTTTTCAGTCCT
TATCCGCTACGTTTTTGGACATCAAAATGTCATCTAGAAACGGATTGAAA
TACAAACTGGCTGGTTGTCATCTATCAAAGAATATAATATAAATGGGAGA
TTTTCTGTTGAGATTTGACTGAAAAATGCTGTGTTGTTTACAAATTTCCA
TGAAGCGGGACATACAAAGTTTAAATATGGGTGATACTTCAAATTAAATA
TTCATTATGATTATCAAAATGAAGAATTCCCCAAAAAATTGGCATGCTGT
TTTCAATTTGATCATAATCAGGAAACCTGGCAAGAGTTCGTGTGAAAAAT
GGACTAGTTTATCTCTCCAAGAATCAGAACGTTATAATTCGGACAAATGT
TGAATGGGATTGAATGTAAAATGTACTtatgtttttttcaattagaGAGA
ATTCTTATCACCATTTTCTGTACTCTGTATTGATTTTGGAATATATTTTG
TGTCATGTTACTTACGAAAAGGATTTTTATAAAGATTCTTACTATACAGT
GATCGGTAAATTtcgggaaaaaattatttggaaaaaaataacgTTTAAAA
TactgtcaaaaatatttcaactttacttttgaatACCA
Run BLAST on NCBI

protein sequence of TCONS_00056328-protein

>TCONS_00056328-protein ID=TCONS_00056328-protein|Name=TCONS_00056328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MKLKELQSYLQQVEGFDDPKVHLEQYVTSGHIASHMLYTMSQTFDDIANN
IVADFGCGCGVLSIGSAMLDAGQVFSFDVDSDALEICQSNVDDFDVTSTV
ELISCDLMQSSTMLDYLTERRYIDTVVMNPPFGTKNNKGIDMYFLQKAIS
IANNAVYSLHKTSTRSHVIKKAEEMNCTVEVLAELRYDLPKTYKFHKKQS
LDVQVDFIRCQPNR
Run BLAST on NCBI

transcript from alignment at scaffold_272:71129..74281-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056328 ID=TCONS_00056328|Name=TCONS_00056328|organism=Clytia hemisphaerica|type=transcript|length=3153bp|location=Sequence derived from alignment at scaffold_272:71129..74281- (Clytia hemisphaerica)
ACTATGGAATAACTGCAAGGGTGGTGGTGTCTGTAGAAAATGTCCAAAAT
TGCAGTTACTCCACATAGTGTCAAGGAGTAACTGCAAGACCCCCCTGTTG
ATAACAATAAATACATACTTTAAAGATGAGGAAAGAGACTTTCTTTTACT
CCGAAATTTGAATCAGATTGTTCTTTTTTAACCAAATGTTTTGATTTTCC
AGCCACAGCTATAGTAAATAGTTTCAAAATCATCGATTCTATATACAAAG
ACAAAATGAAGCTAAAAGAACTGCAGAGCTATTTGCAACAAGTGGAAGGG
TTTGATGATCCAAAAGTGCATTTGGAACAATACGTCACTTCAGGTCATAT
TGCGTCACACATGCTGTACACCATGAGCCAAACTTTTGATGACATTGCAA
ATAACATTGTAGCGGACTTTGGATGTGGCTGTGGAGTACTTTCAATTGGT
AGGGTGTTAATTTCCTACTTTTACGTTTTTAAAGATTTTTCCTGTAAACA
TCAAATATATTTTTTGATTTCTTTCCCTTTTATTTCACATTTTCACTTGA
CATCAAATGGTACCCCAGAATAATACCAGAATAGATTATTTTGTGTACAC
GTAAAGAAACTTCTTCCCAACTAAATTCAATCAGGAGATTTTTTTTTGGG
GGGGGGTTGGTAGAGAACCTTTTTGTCCTTTTGAGATTCGTCAATACTGC
AGACTGCATCTTGGCAGGCCAGATTGAAGAAACTTTATAGATGAACAAAA
ATACACGAACAAGAAATAGTTCTTAACAAAAAATCATAAGAACACATAGT
AGATAATAAAAGGTTTTTGGTCAAAATGATTGGTTTTGATAGGCAGAGTT
TAAAGTCTTTGGGCTGCTTTGGGGGTTGGCTTCTAAACTGTCATTTGAAA
ATTGTAAATAGTAAGCCCGATTGTCGTAACTATCGGAGGACCATGTCTGA
TTCAAATTTGCCGCTTCGTTTCAAATTTTCACGATTTTAATGAAATTGTT
TACCAGTCGGGCTTACTAATACAAAGTTCATTGTATTATTATCTGTAAAT
TTACAACCCTTTCTAGTATCCTTCCCTTCAGGAGAAAAACTACATTAGAC
TATCAATCATTGTTTTCGTCTTAATACAGGTTCAGCTATGCTACCCTCTT
TTCAGAAAAAAACGACGACATTAGACTATTAATAATTTTTTCGTTATAAT
ACAGGTTCAGCTATGCTACCATCTTTTCAGGAAAAAACGACGACATTAGA
CTATTAATAATTTTTCGTCTTAATACAGGTTCAGCTATGCTTGATGCTGG
TCAAGTTTTCAGTTTTGACGTCGATTCTGATGCATTAGAGATATGCCAAA
GTAATGTGGATGATTTTGATGTCACATCAACTGTAGAGTTAATCTCCTGT
GATTTGATGCAGAGCTCCACGATGTTAGATTATTTGACGGAAAGGCGCTA
CATTGATACTGTGGTGATGAATCCACCCTTTGGGACCAAAAACAATAAAG
GTTTGCTTTTTATAAAACTCGCCGTTTGATTATGATGGGGAAATTGTTAA
GGAAGTTACCTTATTACACGAATATTACTAGGCAAGTATTCAACTGCCTT
GGAATTAACACGCAAAAAACTAAAATGAATTTTTCTGCTTTTTCAAGGAA
ACAGCGGCTGGTTTTAATTAAGGGGGTTTTTATTAACACAAAATTTTTCA
ATTCGTGTTAATAAAATGACTAGTATATGACTAGTAAACCCTTCTTGGAT
CTCTCACCGACGTTTTTCTCTGGCCTCGAAAATGTCCACCGATTTGAACT
TATTTAAATTTTTACAAAGTAAAATCGAAAGCGTAAGAATACTTTTTACA
TATAATCTTTCTTTTCAAAGAGTGCCTGTCTTTTTTTTGAATAATAGTAA
AGACTTATATTTTATTAGATTGCACACCCCCGAAAGTGATTTTGATATAG
AAGGTGCCTTTCGTGTATAAAATTCCCGTTACATACCCGCCACTTAATTT
GCAACTGACTTGGATACTTTTATTCAACTTTACAGGCATTGACATGTACT
TCTTACAAAAAGCTATCTCGATTGCAAACAATGCTGTCTATTCACTTCAC
AAAACCTCTACCCGAAGTCACGTGATCAAAAAAGCTGAAGAGATGAATTG
CACAGTAGAAGTGTTGGCAGAATTGAGGTACGATTTACCAAAGACCTATA
AATTTCATAAGAAACAAAGTTTAGATGTACAAGTGGATTTCATTCGTTGT
CAACCGAACAGATAAGTTTGATTTTTTATGCAACTTCAGAATTCTGAGAT
AGAGTTTGATGGGAATCGGATCCATTACAAAGGTTGATGATTCCAAGCTG
GCACACAATGTTGTTTTAACGTTCATCTAACGACAACGTTGTTTTAACGT
TCATCAAACGTCTTATGAATGTTAGGGACTTCAGATGAATGCTGTTACGA
CGTTCTGTGCCACCATCTGGGATTGTAAAACTCAGAATCACGTTGGAAAT
TATGTTTTACATGTCCTATCACATTTGAGTATAAAACCGCATAAGGATTA
TGGGTTTTCAGTCCTTATCCGCTACGTTTTTGGACATCAAAATGTCATCT
AGAAACGGATTGAAATACAAACTGGCTGGTTGTCATCTATCAAAGAATAT
AATATAAATGGGAGATTTTCTGTTGAGATTTGACTGAAAAATGCTGTGTT
GTTTACAAATTTCCATGAAGCGGGACATACAAAGTTTAAATATGGGTGAT
ACTTCAAATTAAATATTCATTATGATTATCAAAATGAAGAATTCCCCAAA
AAATTGGCATGCTGTTTTCAATTTGATCATAATCAGGAAACCTGGCAAGA
GTTCGTGTGAAAAATGGACTAGTTTATCTCTCCAAGAATCAGAACGTTAT
AATTCGGACAAATGTTGAATGGGATTGAATGTAAAATGTACTTATGTTTT
TTTCAATTAGAGAGAATTCTTATCACCATTTTCTGTACTCTGTATTGATT
TTGGAATATATTTTGTGTCATGTTACTTACGAAAAGGATTTTTATAAAGA
TTCTTACTATACAGTGATCGGTAAATTTCGGGAAAAAATTATTTGGAAAA
AAATAACGTTTAAAATACTGTCAAAAATATTTCAACTTTACTTTTGAATA
CCA

Coding sequence (CDS) from alignment at scaffold_272:71129..74281-

>TCONS_00056328 ID=TCONS_00056328|Name=TCONS_00056328|organism=Clytia hemisphaerica|type=CDS|length=1935bp|location=Sequence derived from alignment at scaffold_272:71129..74281- (Clytia hemisphaerica)
GCATTGACATGTACTTCTTACAAAAAGCTATCTCGATTGCAAACAATGCT
GTCTATTCACTTCACAAAACCTCTACCCGAAGTCACGTGATCAAAAAAGC
TGAAGAGATGAATTGCACAGTAGAAGTGTTGGCAGAATTGAGGTACGATT
TACCAAAGACCTATAAATTTCATAAGAAACAAAGTTTAGATGTACAAGTG
GATTTCATTCGTTGTCAACCGAACAGATAAGTTCAGCTATGCTTGATGCT
GGTCAAGTTTTCAGTTTTGACGTCGATTCTGATGCATTAGAGATATGCCA
AAGTAATGTGGATGATTTTGATGTCACATCAACTGTAGAGTTAATCTCCT
GTGATTTGATGCAGAGCTCCACGATGTTAGATTATTTGACGGAAAGGCGC
TACATTGATACTGTGGTGATGAATCCACCCTTTGGGACCAAAAACAATAA
AGATGAAGCTAAAAGAACTGCAGAGCTATTTGCAACAAGTGGAAGGGTTT
GATGATCCAAAAGTGCATTTGGAACAATACGTCACTTCAGGTCATATTGC
GTCACACATGCTGTACACCATGAGCCAAACTTTTGATGACATTGCAAATA
ACATTGTAGCGGACTTTGGATGTGGCTGTGGAGTACTTTCAATTGGCATT
GACATGTACTTCTTACAAAAAGCTATCTCGATTGCAAACAATGCTGTCTA
TTCACTTCACAAAACCTCTACCCGAAGTCACGTGATCAAAAAAGCTGAAG
AGATGAATTGCACAGTAGAAGTGTTGGCAGAATTGAGGTACGATTTACCA
AAGACCTATAAATTTCATAAGAAACAAAGTTTAGATGTACAAGTGGATTT
CATTCGTTGTCAACCGAACAGATAAGTTCAGCTATGCTTGATGCTGGTCA
AGTTTTCAGTTTTGACGTCGATTCTGATGCATTAGAGATATGCCAAAGTA
ATGTGGATGATTTTGATGTCACATCAACTGTAGAGTTAATCTCCTGTGAT
TTGATGCAGAGCTCCACGATGTTAGATTATTTGACGGAAAGGCGCTACAT
TGATACTGTGGTGATGAATCCACCCTTTGGGACCAAAAACAATAAAGATG
AAGCTAAAAGAACTGCAGAGCTATTTGCAACAAGTGGAAGGGTTTGATGA
TCCAAAAGTGCATTTGGAACAATACGTCACTTCAGGTCATATTGCGTCAC
ACATGCTGTACACCATGAGCCAAACTTTTGATGACATTGCAAATAACATT
GTAGCGGACTTTGGATGTGGCTGTGGAGTACTTTCAATTGGCATTGACAT
GTACTTCTTACAAAAAGCTATCTCGATTGCAAACAATGCTGTCTATTCAC
TTCACAAAACCTCTACCCGAAGTCACGTGATCAAAAAAGCTGAAGAGATG
AATTGCACAGTAGAAGTGTTGGCAGAATTGAGGTACGATTTACCAAAGAC
CTATAAATTTCATAAGAAACAAAGTTTAGATGTACAAGTGGATTTCATTC
GTTGTCAACCGAACAGATAAGTTCAGCTATGCTTGATGCTGGTCAAGTTT
TCAGTTTTGACGTCGATTCTGATGCATTAGAGATATGCCAAAGTAATGTG
GATGATTTTGATGTCACATCAACTGTAGAGTTAATCTCCTGTGATTTGAT
GCAGAGCTCCACGATGTTAGATTATTTGACGGAAAGGCGCTACATTGATA
CTGTGGTGATGAATCCACCCTTTGGGACCAAAAACAATAAAGATGAAGCT
AAAAGAACTGCAGAGCTATTTGCAACAAGTGGAAGGGTTTGATGATCCAA
AAGTGCATTTGGAACAATACGTCACTTCAGGTCATATTGCGTCACACATG
CTGTACACCATGAGCCAAACTTTTGATGACATTGCAAATAACATTGTAGC
GGACTTTGGATGTGGCTGTGGAGTACTTTCAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035483XLOC_035483Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056328-proteinTCONS_00056328-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056328-exon-scaffold_272-1575043694:73834..74281TCONS_00056328-exon-scaffold_272-1575043694:73834..74281Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1575043694:72782..73003TCONS_00056328-exon-scaffold_272-1575043694:72782..73003Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1575043694:71129..72246TCONS_00056328-exon-scaffold_272-1575043694:71129..72246Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1510915933:73834..74281TCONS_00056328-exon-scaffold_272-1510915933:73834..74281Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1510915933:72782..73003TCONS_00056328-exon-scaffold_272-1510915933:72782..73003Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1510915933:71129..72246TCONS_00056328-exon-scaffold_272-1510915933:71129..72246Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1491911889:73834..74281TCONS_00056328-exon-scaffold_272-1491911889:73834..74281Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1491911889:72782..73003TCONS_00056328-exon-scaffold_272-1491911889:72782..73003Clytia hemisphaericaexon
TCONS_00056328-exon-scaffold_272-1491911889:71129..72246TCONS_00056328-exon-scaffold_272-1491911889:71129..72246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:71129..74281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.7706	25.9656	8.6556	5.48695	8.53693	6.06072	8.95855	9.33668	6.78338	5.8831	7.93622	5.61873	3.89263	3.85948	5.3268	5.65906	5.13607	7.14474	3.77916	2.72848	5.38677	6.13241	18.5865	16.5894	6.91091	7.44721	2.40012	3.20179	6.16728	8.4113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007848Small_mtfrase_dom
IPR002052DNA_methylase_N6_adenine_CS
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00056328 vs. Swiss-Prot (Human)
Match: METL5 (Methyltransferase-like protein 5 OS=Homo sapiens GN=METTL5 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.019e-80
Identity = 120/210 (57.14%), Postives = 158/210 (75.24%), Query Frame = 1 
Query:  253 KMKLKELQSYLQQVEGFDDPKVHLEQYVTSGHIASHMLYTMSQTFDDIANNIVADFGCGCGVLSIGSAMLDAGQVFSFDVDSDALEICQSNVDDFDVTSTVELISCDLMQSSTMLDYLTERRYIDTVVMNPPFGTKNNKGIDMYFLQKAISIANNAVYSLHKTSTRSHVIKKAEEMNCTVEVLAELRYDLPKTYKFHKKQSLDVQVDFIR 882
            K++LKEL+S LQQV+GF+ PK+ LEQY T  HIA+ MLYT+  T+DDI N +VAD GCGCGVLSIG+AML AG    FD+D DALEI   N ++F++T+ ++++ CD+   S  +      +  DTV+MNPPFGTKNNKG DM FL+ A+ +A  AVYSLHK+STR HV KKA E    ++++AELRYDLP +YKFHKK+S+D++VD IR
Sbjct:    3 KVRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCGVLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTN-IDMVQCDVCLLSNRMS-----KSFDTVIMNPPFGTKNNKGTDMAFLKTALEMARTAVYSLHKSSTREHVQKKAAEWKIKIDIIAELRYDLPASYKFHKKKSVDIEVDLIR 206
The following BLAST results are available for this feature:
BLAST of TCONS_00056328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
METL51.019e-8057.14Methyltransferase-like protein 5 OS=Homo sapiens G... [more]
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