TCONS_00056329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056329
Unique NameTCONS_00056329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056329 ID=TCONS_00056329|Name=TCONS_00056329|organism=Clytia hemisphaerica|type=transcript|length=839bp
aaaaacaatcaacTTCAATTCAAATTCGAattaaaaacaatatttttgtt
cttatttatcaCTTCAAACCTAGTGACGATCCAAGAATCTATCTTTTTAa
tacatatattttttcacAGACCCCCTTGCTAATGTTTCTCGCCCCAGTCA
CTGCGAAGATATTTTACACGCGAGTTTTTATAAATCAGTCCTTTCAGTTA
CAAACAGCAGTAAACCTACCAGGGGTCTAGGACGCCATCATGCAGATCTT
TGTAAAGACGCTGACTGGCAAGACCATTACATTAGAGGTCGAGCCCAGTG
ACACTATCGACAATGttaaagccaaaatccaagatAAAGAAGGAATCCCA
CCAGATCAACAACGTCTTATCTTCGCTGGTAAACAATTGGAAGATGGACG
TACGTTGAGTGACTACAATATCCAAAAGGAGTCAACTCTTCATTTGGTAC
TTCGATTGAGAGGTGGTGgtaagaaaagaaagaagaagaattaCACTACA
CCTAAAAAGATCAAGCACAAGAGAAAGAAGGTCAAGCTTGCAGTCCTCAA
ATACTACAAAATCGACGATAATGGTAAAATCACCCGATTACGTAAAGAAT
GTCCCAGTGAATCTTGCGGTGCTGGTGTATTTATGGCTCAACATTTTGAT
AGACAATACTGTGGAAAATGTTGTTTGACTTATTCTTTCAAGAAAGAATA
AAAACATCTATATTAATAAAGTCTTTGTTATTCTTTCTTATCAAGTGGTT
ATTGCTCATTCCCCCCTGCATCAGTGCTGATATCATCGCGCTGTGGTTCT
AATTGTTTGCAAATTTTGTCCGTTATGATTCAAAAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00056329-protein

>TCONS_00056329-protein ID=TCONS_00056329-protein|Name=TCONS_00056329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKNYTTPKKIKHKRKKVKL
AVLKYYKIDDNGKITRLRKECPSESCGAGVFMAQHFDRQYCGKCCLTYSF
KKE
Run BLAST on NCBI

transcript from alignment at scaffold_272:127585..131972-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056329 ID=TCONS_00056329|Name=TCONS_00056329|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at scaffold_272:127585..131972- (Clytia hemisphaerica)
AAAAACAATCAACTTCAATTCAAATTCGAATTAAAAACAATATTTTTGTT
CTTATTTATCACTTCAAACCTAGTGACGATCCAAGAATCTATCTTTTTAA
TACATATATTTTTTCACAGACCCCCTTGCTAATGTTTCTCGCCCCAGTCA
CTGCGAAGATATTTTACACGCGAGTTTTTATAAATCAGTCCTTTCAGTTA
CAAACAGCAGTAAACCTACCAGGTGAGTGCTCTAAACCATGAACCATGAT
CTCTTTTCTAGCCCAAAACTAATGAATTCTTTACCAATTTCGATTTGCTT
CTTTTGTAGGGGTCTAGGACGCCATCATGCAGATCTTTGTAAAGACGCTG
ACTGGCAAGACCATTACATTAGAGGTATGAAAAGATATCAATGTTCAGGT
TCATTTCTATATTACCTTTATCTTTCATATTTACAACATTAATGTATCCA
TAAGTTCAATGTGAGAACATTTTTATGATGACAAAGATGACGAGCCTGAA
TTTATGATGTTAATGAGGCATTTGTCTGAAAAATTAGTACAGTTTTTTTT
AATTCAGTTCAATTCTGGGTTTTACAGTACATTAAGCACCTTCATGTCAA
GACAAGCTAAATTTACCTCAGCATTTGCGTTGAAAATAGCTGAATGCTGA
TGTAAATTAAAATGGCCAAAGTTGCACAGAGTTTCTTATAGCAGTCCCTT
ATTATAGTCCCTTATAGTTAGTTATATTTGCATCTAATCTGAAAGTAATT
TTGTCAGTCATTTTGTGTGTTCATTGCTATGCTTAGAAAACAGGATGGCT
GATAAGTTAGCAAGAGTCAGTCTATTAAACCTGATTCATGAAAACTTGAT
AAATCTTACTCAGTTATTCTATGTAGTCTTTTCTATGTGTATTTTCTTGT
TCCTTTGGTGATGACACAGATGACGAGCCTGATACATAACTTGATGTCAA
TGAGGCATTTGTCTGAAAAGGACCCTTTACATTTGATTTCTTTATCAAGT
ACTTCAATGGGATTAATTTTTGTGGGATCTAAATTTCATGGATTTGGTTG
TTATCATCTGCAAACACAATTTTACAAATGAGCTCAACCACAAGATAAGT
AATTTTCAACAATCAAGAGCTTTAAATTGAGAACTTTAATCCATATAGTG
TAACCATGTGATGAATTTTATTCTAATTCGCAGTTTCCACTGAGAGAATG
TGTAACCCACATATTTCACAGATGTATTCTAGCCCTTCCTTAGATGTCTG
ATGGTTACATTAGTAGTTCAACAGTGTTGTGTTTTAATCCTTTTATTTTG
GATCACTTTGCCCCATGAGCCTAAGAAACTTACTTGTCTTGTATGTCATT
CAAAGCTAAGGATTTAAACTGTAACATAAAAACCAGGATGATGAAAATTG
GAATTACCGTATGACTTCAATGATTAACGCGTGTGGCAAATACCTGAATG
GTTTTATCACTTACATTGAATTGTTTTTCTCTTTTATATGTGTTTTCCAT
ATTCTAGACAGTTCTATAGATAGAAAACCTGATGATGAAAATTGGAATTA
CTACCGTATGACTTCAATGATTAACGCGTGCGGCAAATACCTGAATGGTT
TTATCACTTACATTGGATTGTTTTTCTCTTTTATATGTGTTTTCCTTGTT
CTAGACAGTTCTATAGATAGAAAACCTGATGATGAAAATTGGAATTACCG
TATGACTTAAATGATTAACGCGTGCGGCAAATACCTGAATGGTTTTCACA
TCGTTTTTCTCGCTTCATTGTCAGTCTGTGCCACAGGCAGAACTTACTCA
AATTTTTTCTGCTCGTCTGGGAAGATGAAAATTGACTTGAATCTCTGGTA
AAATTGTATGATGACCGGCGAGAGTTGAAACCTTTTGGAGGTGAAAAAGC
ATTAAGTTTTAAAAGGTTTTTTACTGAAAGAAAATAGACCTTACCGTCGA
AACATTGTTAAATTGTGAAAAAAATGCGTGAACTTCCCAAACGGGAGTTC
TACATTTAAGTTTTCCTTATTTTCAACTTTTTCTCCCGCTTCTTCCCGAC
CTGGAAGTCATAACTGTTAACCATTTGTTATCTGTTTGGGTGTCAAGTTA
ATTTCCCGATCAAGTTAGTGTCACAGACTGATTGTGTTTCCCTTATTCTT
GACAATTTTATAGATAGAAAACCTGATGATGATAATTGGAATTACCGTAT
GATTCAAATGATTAACGCGTGCGGCAAATATCTGAATGGTTTTTTATCTG
GTTTACTTTTCTTATTATTTTCTCTAGGCGAGACCAATTTCATTTGTTGT
TTTACGGGTGCGACCGATCCAGCATTTGCTGCAAACGAAAAATTGATATT
AAATTTTCCATGCCAAGGATTTCTAATACTAGTTATTTATAAAATTTACT
TAAAAAAAGATGAAAAGAATCTAGAATCATGAATTCTATGCACGAAAGAT
TTTATTACAAACTCCATCAAAGATGAGTGAATTTTAATTAAAGCCTAATA
ACCTTCCTTGATTAATGAAAATCTTAGTTTTATTTTACCAACCGACTGAC
TCGTATTTTGCTAACAATCTGCCCGTAGAACAACAAATAAAATTGGTCTC
GCCTTGGTTGGCTTTAGAGAGATTTGAGGTCCCGACTTATCTTAAGTTAG
AGTAGTTACATATTTAGCACTTTTAGCCTGTTTAGATTTCAAACTTTCCA
GTATTTAAAGCAAACTACTAATTTAGTAACGTAATCAATTCAAAGCTTGT
CTGAGGAATAAGTCTAGCACATTGTTTTTCAATGATGAAAATTGGAATTA
CCGTATGATATAATGATTAAATTGCGGCAATTGCTGAGAAAAACATGTCT
TGGTCTGAGTTACTCTATTTCAAAGTGGTTCTGAATCACTCACGCGGGTT
GTATGACAAACTATTCTAAGTTCCTTTTCCTGTTGGTGAAATATTGCTTC
TAGCGTAAAAGGATTCTTACAATTTTCTGAGGGAAAAATAAGTTGGCTTG
ACTTGTCCTTCTCTTATTATGAAAGAACAGATCAGTTAAATTCAGATAAG
ATTCTTTTTAGTGAAGAAAGTGAAATTAGATAAAAAATTTAGAATGGGAA
AGGAAAGTAGAATATGTCTCAGTTCCAGTTGATATTAATCATTTGAAAGT
TCTGTTTACTGACCATAGTCGAGTTATATCTACTTCAGAATAACAACAGT
ATTTCTAGGACTAATCATTTATTAAAGGAATTTTTTCACGTCAATATAAT
GGGACTTTATTGTTGTAGGTCGAGCCCAGTGACACTATCGACAATGTTAA
AGCCAAAATCCAAGATAAAGAAGGTACAAAATATTTCCAGTGTTACTTTT
ACTTGTGTTTCTTGCTAAGGCAATCTGGTAAATTTGACTCCCTTGAGAAT
TTTCACTTTCTCAAAAATTCTTTGAGAAGATATTTGCTGATTGTATATGT
CAAAATTCCATAGAAATTTAAAAAGATGGTAATACAACACAATCGTGGAC
GAAAAATTTTCATTAGTGATCAAATTATTTTGAAAAACCTTTTTTAGGTG
TGTCAAAAACAAGGGCAAGGGTTGCAGATTTAGGCCCAAGACTGAAAAAA
TTGAAAAATCTTATGTCAGTTTCTATCAAATTATTGACAACTTTTGTTTT
CAACCTTAGGAATCCCACCAGATCAACAACGTCTTATCTTCGCTGGTAAA
CAATTGGAAGATGGACGTACGTTGAGTGACTACAATATCCAAAAGGAGTC
AACTCTTCATTTGGTACTTCGATTGAGAGGTGGTGGTAAGAAAAGAAAGA
AGAAGAATTACACTACACCTAAAAAGATCAAGCACAAGAGAAAGAAGGTA
AGTTAGTTGCTCACAACAAACTAAATATTCTAAGTTTAGATCTGAAAAAA
GTGCCAGCTGATGAATTTTATTCTAATTCGCAGTTTCCACTGAGAGAATG
TGTAACCCACATATTTCATGGATGTATTCTAGCCCTTCCTTAGATGTCTG
ATGGCACAGTAGTTGTTCTAATCGATTATAATTTACCTTTATCAGGATTC
TAAATATTGAATTGTTTTTCATCTCACAGGTCAAGCTTGCAGTCCTCAAA
TACTACAAAATCGACGATAATGGTAAAATCACCCGATTACGTAAAGAATG
TCCCAGTGAATCTTGCGGTGCTGGTGTATTTATGGCTCAACATTTTGATA
GACAATACTGTGGAAAATGTTGTTTGACTTATTCTTTCAAGAAAGAATAA
AAACATCTATATTAATAAAGTCTTTGTTATTCTTTCTTATCAAGTGGTTA
TTGCTCATTCCCCCCTGCATCAGTGCTGATATCATCGCGCTGTGGTTCTA
ATTGTTTGCAAATTTTGTCCGTTATGATTCAAAAGGAT

Coding sequence (CDS) from alignment at scaffold_272:127585..131972-

>TCONS_00056329 ID=TCONS_00056329|Name=TCONS_00056329|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at scaffold_272:127585..131972- (Clytia hemisphaerica)
GTCAAGCTTGCAGTCCTCAAATACTACAAAATCGACGATAATGGTAAAAT
CACCCGATTACGTAAAGAATGTCCCAGTGAATCTTGCGGTGCTGGTGTAT
TTATGGCTCAACATTTTGATAGACAATACTGTGGAAAATGTTGTTTGACT
TATTCTTTCAAGAAAGAATAAGAATCCCACCAGATCAACAACGTCTTATC
TTCGCTGGTAAACAATTGGAAGATGGACGTACGTTGAGTGACTACAATAT
CCAAAAGGAGTCAACTCTTCATTTGGTACTTCGATTGAGAGGTGGTGGTA
AGAAAAGAAAGAAGAAGAATTACACTACACCTAAAAAGATCAAGCACAAG
AGAAAGAAGGTCGAGCCCAGTGACACTATCGACAATGTTAAAGCCAAAAT
CCAAGATAAAGAAGATGCAGATCTTTGTAAAGACGCTGACTGGCAAGACC
ATTACATTAGAGGTCAAGCTTGCAGTCCTCAAATACTACAAAATCGACGA
TAATGGTAAAATCACCCGATTACGTAAAGAATGTCCCAGTGAATCTTGCG
GTGCTGGTGTATTTATGGCTCAACATTTTGATAGACAATACTGTGGAAAA
TGTTGTTTGACTTATTCTTTCAAGAAAGAATAAGAATCCCACCAGATCAA
CAACGTCTTATCTTCGCTGGTAAACAATTGGAAGATGGACGTACGTTGAG
TGACTACAATATCCAAAAGGAGTCAACTCTTCATTTGGTACTTCGATTGA
GAGGTGGTGGTAAGAAAAGAAAGAAGAAGAATTACACTACACCTAAAAAG
ATCAAGCACAAGAGAAAGAAGGTCGAGCCCAGTGACACTATCGACAATGT
TAAAGCCAAAATCCAAGATAAAGAAGATGCAGATCTTTGTAAAGACGCTG
ACTGGCAAGACCATTACATTAGAGGTCAAGCTTGCAGTCCTCAAATACTA
CAAAATCGACGATAATGGTAAAATCACCCGATTACGTAAAGAATGTCCCA
GTGAATCTTGCGGTGCTGGTGTATTTATGGCTCAACATTTTGATAGACAA
TACTGTGGAAAATGTTGTTTGACTTATTCTTTCAAGAAAGAATAAGAATC
CCACCAGATCAACAACGTCTTATCTTCGCTGGTAAACAATTGGAAGATGG
ACGTACGTTGAGTGACTACAATATCCAAAAGGAGTCAACTCTTCATTTGG
TACTTCGATTGAGAGGTGGTGGTAAGAAAAGAAAGAAGAAGAATTACACT
ACACCTAAAAAGATCAAGCACAAGAGAAAGAAGGTCGAGCCCAGTGACAC
TATCGACAATGTTAAAGCCAAAATCCAAGATAAAGAAGATGCAGATCTTT
GTAAAGACGCTGACTGGCAAGACCATTACATTAGAGGTCAAGCTTGCAGT
CCTCAAATACTACAAAATCGACGATAATGGTAAAATCACCCGATTACGTA
AAGAATGTCCCAGTGAATCTTGCGGTGCTGGTGTATTTATGGCTCAACAT
TTTGATAGACAATACTGTGGAAAATGTTGTTTGACTTATTCTTTCAAGAA
AGAATAAGAATCCCACCAGATCAACAACGTCTTATCTTCGCTGGTAAACA
ATTGGAAGATGGACGTACGTTGAGTGACTACAATATCCAAAAGGAGTCAA
CTCTTCATTTGGTACTTCGATTGAGAGGTGGTGGTAAGAAAAGAAAGAAG
AAGAATTACACTACACCTAAAAAGATCAAGCACAAGAGAAAGAAGGTCGA
GCCCAGTGACACTATCGACAATGTTAAAGCCAAAATCCAAGATAAAGAAG
ATGCAGATCTTTGTAAAGACGCTGACTGGCAAGACCATTACATTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035484XLOC_035484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056329-exon-scaffold_272-1575043694:131751..131972TCONS_00056329-exon-scaffold_272-1575043694:131751..131972Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1575043694:131599..131663TCONS_00056329-exon-scaffold_272-1575043694:131599..131663Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1575043694:128650..128704TCONS_00056329-exon-scaffold_272-1575043694:128650..128704Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1575043694:128126..128313TCONS_00056329-exon-scaffold_272-1575043694:128126..128313Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1575043694:127585..127893TCONS_00056329-exon-scaffold_272-1575043694:127585..127893Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1510915933:131751..131972TCONS_00056329-exon-scaffold_272-1510915933:131751..131972Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1510915933:131599..131663TCONS_00056329-exon-scaffold_272-1510915933:131599..131663Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1510915933:128650..128704TCONS_00056329-exon-scaffold_272-1510915933:128650..128704Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1510915933:128126..128313TCONS_00056329-exon-scaffold_272-1510915933:128126..128313Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1510915933:127585..127893TCONS_00056329-exon-scaffold_272-1510915933:127585..127893Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1491911889:131751..131972TCONS_00056329-exon-scaffold_272-1491911889:131751..131972Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1491911889:131599..131663TCONS_00056329-exon-scaffold_272-1491911889:131599..131663Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1491911889:128650..128704TCONS_00056329-exon-scaffold_272-1491911889:128650..128704Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1491911889:128126..128313TCONS_00056329-exon-scaffold_272-1491911889:128126..128313Clytia hemisphaericaexon
TCONS_00056329-exon-scaffold_272-1491911889:127585..127893TCONS_00056329-exon-scaffold_272-1491911889:127585..127893Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056329-proteinTCONS_00056329-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:127585..131972 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1609.23	1626.88	1670.19	1801.68	1341.26	1114.91	1396.88	1423.74	2340.44	1803.66	2374.73	2991.79	3396.4	3472.54	3473.56	3271.6	3595.06	3658.62	2137.49	2258.23	3855.68	3742.08	3288.14	3020.79	2480.29	2482.03	3922.89	4141.3	2453.52	2673.02
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR002906Ribosomal_S27a
IPR000626Ubiquitin_dom
IPR019954Ubiquitin_CS
IPR029071Ubiquitin-rel_dom
IPR011332Ribosomal_zn-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00056329 vs. Swiss-Prot (Human)
Match: RS27A (Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 4.341e-72
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 3 
Query:  240 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDNGKITRLRKECPSESCGAGVFMAQHFDRQYCGKCCLTYSFKK 695
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG KKRKKK+YTTPKK KHKRKKVKLAVLKYYK+D+NGKI+RLR+ECPS+ CGAGVFMA HFDR YCGKCCLTY F K
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 152
The following BLAST results are available for this feature:
BLAST of TCONS_00056329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS27A4.341e-7290.79Ubiquitin-40S ribosomal protein S27a OS=Homo sapie... [more]
back to top