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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056345 ID=TCONS_00056345|Name=TCONS_00056345|organism=Clytia hemisphaerica|type=transcript|length=1496bp
GCAGCTAGACGTTTTTTGATCGCTGCTAAGATATTTTCTTACACTTGCAA
GACTCTACTGCTAATATTAcgataattatggaaatttgaatttgaatccG
TGATAATTCGATTTGCTTGGATTTCAGTTAATGGTTGATGCTCGCAtatc
aataaaaacacgaaACCTTCTTGAATAGTATCAGACAACCTTGTGGACTC
GAAAGAACACTCATAGCTGGTAAACTTGATTGACCTTGGTTTATAAAAGA
GCCACCAGATTGTAATTGAATCTTTGCGTGGGATTTGACAGAAGTAGCAT
CATAAGAATATATCGGCAAATTCTCTTCAATAATAAGCAACTGGTTATAT
CTTCTTATTCTACCGACAATTTTGAAGTCCTTTCATGCTTATTCACCGAT
TCGACGATTTGCTTATTCTTCATAAATAAGAACTCATttcattggctgaa
atttgtgAAAGCAGTTTTGACGAAGAGTAGAATAGAAGAATTTCGACTTG
AAACTGTGCCAAAATTGTTACCTAAGATAACGAAACTAGTCCCAGCTCAC
ACCATTGTCAATCACCAAGGTAACAGACACACACATACAACCAATCAAAC
AAGATGGATGTTCTGTTACACCACCCACAACAATCCACTCTAATCCCATC
ACCTAATTCTTCttcaaatgtcaacaaaaagaaatcacGCCTCTCCTACA
GTATCACATTCAAACTAGCCGCTGTTCGTCATGCAGAATCCCATGGCAAC
CGGGCTACAGCACGCTATTTAGGTATCAATGAAAAACAGATTAGGGATTG
GCGCTCAAAGAAGACAAGTCTGATGAGCACAAACGCCAATGCTAAACGAC
TGAAGGGCGCCGGGCGGCAAGGTGGAGGCGAGACTAAAAATCGCCACAAA
TCTACAAACTCTTTACCGACTAATGTCAACTTGAAGGCGAAAGTTCAACC
ATTCACACCAAGTCCTCCATCTCATAGATACGATTTCTCATGGTGGAGAC
AATGTCTTCCACGCAGTAATACTACCATTTTGAAAGATGAAATTCACGTA
CCACAGCAACAAAAAAGCTACGCAACTTTGTCTCCTCAAACACAAACAGC
ACAgacaaataataataacaattacGTCAGGCATTCAattaaatccataa
tggcaTCCTCACATACGTCACCAACAAAAGCAGAAAGCTCGTCCCAGCCT
ACAATCACTTCACAGTTCCACCACCATTCACCGACCAAAAAGAACGACCA
GGAATTTAAAGACAAAGTGTCATGCGCATTAGCACTTCTTGAACTGAAAA
AGACAAACACGCAGAGTTTCTTTATGAACACGCACCAATGGCTCCAATCA
GAACTTTGaaaacctttttctgggtgTTTTTGGGGgtttcctgtattttt
atatttttgtgttAGATTTTCTGGTTCAGTTCAGTTACCTTAAAAAATAC
ATTATAACGAAATTTTAAACCAAAATGATATTAATTCAGTAGTTTT Run BLAST on NCBI protein sequence of TCONS_00056345-protein >TCONS_00056345-protein ID=TCONS_00056345-protein|Name=TCONS_00056345-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MDVLLHHPQQSTLIPSPNSSSNVNKKKSRLSYSITFKLAAVRHAESHGNR
ATARYLGINEKQIRDWRSKKTSLMSTNANAKRLKGAGRQGGGETKNRHKS
TNSLPTNVNLKAKVQPFTPSPPSHRYDFSWWRQCLPRSNTTILKDEIHVP
QQQKSYATLSPQTQTAQTNNNNNYVRHSIKSIMASSHTSPTKAESSSQPT
ITSQFHHHSPTKKNDQEFKDKVSCALALLELKKTNTQSFFMNTHQWLQSE
L Run BLAST on NCBI transcript from alignment at scaffold_272:238530..240025 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056345 ID=TCONS_00056345|Name=TCONS_00056345|organism=Clytia hemisphaerica|type=transcript|length=1496bp|location=Sequence derived from alignment at scaffold_272:238530..240025 (Clytia hemisphaerica)
AAAACTACTGAATTAATATCATTTTGGTTTAAAATTTCGTTATAATGTAT
TTTTTAAGGTAACTGAACTGAACCAGAAAATCTaacacaaaaatataaaa
atacaggaaacCCCCAAAAAcacccagaaaaaggttttCAAAGTTCTGAT
TGGAGCCATTGGTGCGTGTTCATAAAGAAACTCTGCGTGTTTGTCTTTTT
CAGTTCAAGAAGTGCTAATGCGCATGACACTTTGTCTTTAAATTCCTGGT
CGTTCTTTTTGGTCGGTGAATGGTGGTGGAACTGTGAAGTGATTGTAGGC
TGGGACGAGCTTTCTGCTTTTGTTGGTGACGTATGTGAGGAtgccattat
ggatttaatTGAATGCCTGACgtaattgttattattatttgtcTGTGCTG
TTTGTGTTTGAGGAGACAAAGTTGCGTAGCTTTTTTGTTGCTGTGGTACG
TGAATTTCATCTTTCAAAATGGTAGTATTACTGCGTGGAAGACATTGTCT
CCACCATGAGAAATCGTATCTATGAGATGGAGGACTTGGTGTGAATGGTT
GAACTTTCGCCTTCAAGTTGACATTAGTCGGTAAAGAGTTTGTAGATTTG
TGGCGATTTTTAGTCTCGCCTCCACCTTGCCGCCCGGCGCCCTTCAGTCG
TTTAGCATTGGCGTTTGTGCTCATCAGACTTGTCTTCTTTGAGCGCCAAT
CCCTAATCTGTTTTTCATTGATACCTAAATAGCGTGCTGTAGCCCGGTTG
CCATGGGATTCTGCATGACGAACAGCGGCTAGTTTGAATGTGATACTGTA
GGAGAGGCgtgatttctttttgttgacatttgaaGAAGAATTAGGTGATG
GGATTAGAGTGGATTGTTGTGGGTGGTGTAACAGAACATCCATCTTGTTT
GATTGGTTGTATGTGTGTGTCTGTTACCTTGGTGATTGACAATGGTGTGA
GCTGGGACTAGTTTCGTTATCTTAGGTAACAATTTTGGCACAGTTTCAAG
TCGAAATTCTTCTATTCTACTCTTCGTCAAAACTGCTTTcacaaatttca
gccaatgaaATGAGTTCTTATTTATGAAGAATAAGCAAATCGTCGAATCG
GTGAATAAGCATGAAAGGACTTCAAAATTGTCGGTAGAATAAGAAGATAT
AACCAGTTGCTTATTATTGAAGAGAATTTGCCGATATATTCTTATGATGC
TACTTCTGTCAAATCCCACGCAAAGATTCAATTACAATCTGGTGGCTCTT
TTATAAACCAAGGTCAATCAAGTTTACCAGCTATGAGTGTTCTTTCGAGT
CCACAAGGTTGTCTGATACTATTCAAGAAGGTttcgtgtttttattgata
TGCGAGCATCAACCATTAACTGAAATCCAAGCAAATCGAATTATCACgga
ttcaaattcaaatttccataattatcgTAATATTAGCAGTAGAGTCTTGC
AAGTGTAAGAAAATATCTTAGCAGCGATCAAAAAACGTCTAGCTGC Coding sequence (CDS) from alignment at scaffold_272:238530..240025 >TCONS_00056345 ID=TCONS_00056345|Name=TCONS_00056345|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_272:238530..240025 (Clytia hemisphaerica)
tCAAAGTTCTGATTGGAGCCATTGGTGCGTGTTCATAAAGAAACTCTGCG
TGTTTGTCTTTTTCAGTTCAAGAAGTGCTAATGCGCATGACACTTTGTCT
TTAAATTCCTGGTCGTTCTTTTTGGTCGGTGAATGGTGGTGGAACTGTGA
AGTGATTGTAGGCTGGGACGAGCTTTCTGCTTTTGTTGGTGACGTATGTG
AGGAtgccattatggatttaatTGAATGCCTGACgtaattgttattatta
tttgtcTGTGCTGTTTGTGTTTGAGGAGACAAAGTTGCGTAGCTTTTTTG
TTGCTGTGGTACGTGAATTTCATCTTTCAAAATGGTAGTATTACTGCGTG
GAAGACATTGTCTCCACCATGAGAAATCGTATCTATGAGATGGAGGACTT
GGTGTGAATGGTTGAACTTTCGCCTTCAAGTTGACATTAGTCGGTAAAGA
GTTTGTAGATTTGTGGCGATTTTTAGTCTCGCCTCCACCTTGCCGCCCGG
CGCCCTTCAGTCGTTTAGCATTGGCGTTTGTGCTCATCAGACTTGTCTTC
TTTGAGCGCCAATCCCTAATCTGTTTTTCATTGATACCTAAATAGCGTGC
TGTAGCCCGGTTGCCATGGGATTCTGCATGACGAACAGCGGCTAGTTTGA
ATGTGATACTGTAGGAGAGGCgtgatttctttttgttgacatttgaaGAA
GAATTAGGTGATGGGATTAGAGTGGATTGTTGTGGGTGGTGTAACAGAAC
ATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056345-exon-scaffold_272-1491911889:238530..240025 | TCONS_00056345-exon-scaffold_272-1491911889:238530..240025 | Clytia hemisphaerica | exon |
| TCONS_00056345-exon-scaffold_272-1510915933:238530..240025 | TCONS_00056345-exon-scaffold_272-1510915933:238530..240025 | Clytia hemisphaerica | exon |
| TCONS_00056345-exon-scaffold_272-1575043694:238530..240025 | TCONS_00056345-exon-scaffold_272-1575043694:238530..240025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:238530..240025 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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