TCONS_00056324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056324
Unique NameTCONS_00056324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056324 ID=TCONS_00056324|Name=TCONS_00056324|organism=Clytia hemisphaerica|type=transcript|length=192bp
TTACTCGGAATCGAATATTTGCATTATTCGAAGATCATACACCGTGATAT
CAAACCAGCCAATCTCCTACTTGATGACAACGACCATATAAAGATTGCAG
ATTTCGGTGTATCTGATATGTTCGAAGGGGAAAACGACTTATTGAGTAAA
CACGCGGGTAGTCCGGCTTTTCAAGCACCCGAAGTCCACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_272:305051..306466+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056324 ID=TCONS_00056324|Name=TCONS_00056324|organism=Clytia hemisphaerica|type=transcript|length=1416bp|location=Sequence derived from alignment at scaffold_272:305051..306466+ (Clytia hemisphaerica)
TTACTCGGAATCGAATATTGTAAGTTGAAAGCGCAATACTTTgattgatg
aaaatgaccagAGGCACCTCTTTCAAAAAGCTATCTAGGTACTGGTATTC
TTCCTGGATTACTTGCCTCGCTATTGCTAAGTACTAAGTAGAATCGACCT
GGAAATCATTTGTCGATGTCATAAAGATTTCATTGAGGAAGGATATTGTG
GTACACCAGGTCTTAAACTTGCATTTTGGTGACAACAGTTTGACTAAAAA
GGATCACACACAAAATGCTTGCTCAGAAGAAATTTGATATTTGCTTAAGT
GTTTTACAAGTCTGATTCAAATCCCTCTAACCAACAttaagacacccctg
tgtcaaagacccgctgggaccccagccccactgaaaaatttgggcaaaat
ttcttccccacaaaataccctacaatttcagccccactgggaaattgact
ttgatttcatccccgtTCGAAACTTAATGCAAAAATTAGctgtccaaaac
catccccactggatacTTTAAGCTCGGGAGCAATAGAATTTCGATAGAaa
tctttatccccactgtatgaaaaagtttcaccggggctgtgagacagggg
tgtattaagtCCAACCTTAGTAACGAGTCATCTTAACGTTTCCAACATAT
CATTCTTCACAGTGCATTATTCGAAGATCATACACCGTGATATCAAACCA
GCCAATCTCCTACTTGATGACAACGACCATATAAAGGTTTGGAAAATATT
ATTGAAgctaaaatttaatttgaaagcGCCCTTTAGACTAGTATCAAATT
TGGCCTTGcaatagtctagcaagctagacgactaattaaGACATACCTAA
TAGAAATAAAGCAACAAGtacaggctcggatacagagggaggctataacc
aatggaggagagtgaactttattatcgtattaccttatatggaaactaat
tactctctatgaataagatagcctacctcctgtatccgaccctgaagtaa
tggagggaacgaAACTTAGTTTATACTAACTGAATCcggtaacaataatc
gtattatcatataacgcctatactactgtattacacgcattataaacaaC
TCCAGTCTAATAATTAGAGGAAATTTGTGAGTAAGGTTGGTTACCAACTC
TAACTACCCGTCTGAATTATTATTATCTGCCAACCCATTCATTTGATACA
TTACACCCACTTTTAtgaatttaatttttgacacattctcagaggtctgt
gattcaaattaaatcaaaacagtcaaaaaaaaccttttttcatattttct
ctCTTCGCCTGTCATAGATTGCAGATTTCGGTGTATCTGATATGTTCGAA
GGGGAAAACGACTTATTGAGTAAACACGCGGGTAGTCCGGCTTTTCAAGC
ACCCGAAGTCCACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035480XLOC_035480Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056324-exon-scaffold_272-1491911889:305051..305069TCONS_00056324-exon-scaffold_272-1491911889:305051..305069Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1510915933:305051..305069TCONS_00056324-exon-scaffold_272-1510915933:305051..305069Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1575043694:305051..305069TCONS_00056324-exon-scaffold_272-1575043694:305051..305069Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1491911889:305713..305786TCONS_00056324-exon-scaffold_272-1491911889:305713..305786Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1510915933:305713..305786TCONS_00056324-exon-scaffold_272-1510915933:305713..305786Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1575043694:305713..305786TCONS_00056324-exon-scaffold_272-1575043694:305713..305786Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1491911889:306368..306466TCONS_00056324-exon-scaffold_272-1491911889:306368..306466Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1510915933:306368..306466TCONS_00056324-exon-scaffold_272-1510915933:306368..306466Clytia hemisphaericaexon
TCONS_00056324-exon-scaffold_272-1575043694:306368..306466TCONS_00056324-exon-scaffold_272-1575043694:306368..306466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:305051..306466 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	6.98792	0	0	0	0	0	3.80608e-06	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00056324 vs. Swiss-Prot (Human)
Match: KKCC1 (Calcium/calmodulin-dependent protein kinase kinase 1 OS=Homo sapiens GN=CAMKK1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-23
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 LLGIEYLHYSKIIHRDIKPANLLLDDNDHIKIADFGVSDMFEGENDLLSKHAGSPAFQAPE 183
            +LG+EYLH  KI+HRDIKP+NLLL D+ H+KIADFGVS+ FEG +  LS  AG+PAF APE
Sbjct:  260 ILGLEYLHCQKIVHRDIKPSNLLLGDDGHVKIADFGVSNQFEGNDAQLSSTAGTPAFMAPE 320
The following BLAST results are available for this feature:
BLAST of TCONS_00056324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KKCC15.553e-2367.21Calcium/calmodulin-dependent protein kinase kinase... [more]
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