Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056325 ID=TCONS_00056325|Name=TCONS_00056325|organism=Clytia hemisphaerica|type=transcript|length=1429bp GATTCCAGAGACAAATATAGCGGCAAAGCAGTTGATGTTTGGGCAATGGG GATaacattattttgttttctttacgGCAAGTGTCCATTCTACAGTTCAT TGATGGGCGAACTcatcactaaaatcaaatcgGAGCCACTGGTGTTTCCA GAAAGTCCCATCGTCAACCCACAAGCCAAAGATCTGATATCAAGGATGTT GGCGAAAGATCCTAAAGAAAGAATAACCGTTCTTGAAATGAAGGAGCATC ACTGGGTAACAGATGGTGGTCGTGTTACATTAGCAGCAACCGAAGATCAT TGTACTGTTATTGAAGTCACTGATGAAGAAGTCAAAAATAGCGTTAAAAT TATCTCCAAACTTTCAAGTCTCgtATTCGCAAAATCCATATTAAAAGGTC GATCTTTCGTCCCTGGCagaggaaagaaaaacaaatggaAGAGAAATCAC TCCTTACCAACCCCTAATTTATGATAATTCAtgttaatttattttcaaat cattaACCATGTACGCACTTCATGGTTTCGTTGCGTTGGAAAAACCAAAC GAAGCTATCTTATCGGTCTAtctaaagggataatcagatggtttgtaata ttttgcatgtgggatccttctattgtcctgagcaaaatctcaaaatattt ttgccttactattttccaaagtcgagatatttaagttacaaggttttggc ttttaggatgaaaacaatagaatttcaacgtaagaacccattttcaaaaa tttcaaattttgatatcttgattttagaaaattgttacacaaaaTACTTT GGGGTTTTACTCAGGACCGTAGAAGGTTTCTACTACAggtcaaatatctc aaaccatctgattatctctTTAAGGAGTAACGCCATTTTAAGCCAATAGA ATGAGTTTCGTTTCTTTTCGTGGAACAAAACGGCACGTAATACATGGGAA CATAGACTTGATAACAAGGCCTGGTACTTTAAGTATTTCTAACgtttttt taacgttttgagGTGAAAATGGTGCGTAAAGGTATCTTTGTCACATTGGT CATTGACAACTGCTGGAACataacgttgttttgacgttcatCTGGCGTAT GCTATGGACGTTGACAATTTGACCTAGCCAGTACTTAAGAGACCAGGAAA CACAAAATCTTTAAAGGTAGACTAAAGATATAAACAAATTTAGACAAAAG TAAAACCATTCTTAAACATTTGGTTCAATTGGCTCCAAAGAAATAATTAT CTTCATTGGTCAAAACTCCATTGCATTTTTATGTACATACTAATGTTTTT GTCGAATATATTTTTATGTAAATATTCTACTATTTTGATACTTCCCTCTA TATATGAattgttgtttttaaaattttattagatAAAGTATCATttacaa aatgaagaaaatactttttttaattttgc Run BLAST on NCBI protein sequence of TCONS_00056325-protein >TCONS_00056325-protein ID=TCONS_00056325-protein|Name=TCONS_00056325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
DSRDKYSGKAVDVWAMGITLFCFLYGKCPFYSSLMGELITKIKSEPLVFP ESPIVNPQAKDLISRMLAKDPKERITVLEMKEHHWVTDGGRVTLAATEDH CTVIEVTDEEVKNSVKIISKLSSLVFAKSILKGRSFVPGRGKKNKWKRNH SLPTPNL Run BLAST on NCBI transcript from alignment at scaffold_272:307634..316604+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056325 ID=TCONS_00056325|Name=TCONS_00056325|organism=Clytia hemisphaerica|type=transcript|length=8971bp|location=Sequence derived from alignment at scaffold_272:307634..316604+ (Clytia hemisphaerica) GATTCCAGAGACAAATATAGCGGCAAAGCAGTTGATGTTTGGGCAATGGG
GATaacattattttgttttctttacgGCAAGGTATATATCATGTTCGTTT
TAGTCTTACTACTACTTAATGTGGTTTTGTGcgttacatttttcaaattg
tgGCAGGTAAATGTTATACTTCCAATCCTACATAAGAGATAAGACCTTAT
TTGGAAAAATCATCTTGTGCGCAGCTCCTTGACTAAACTAGTATATGTAT
ATGAATAAATTGCTATAAATTGATCCAATttgcaagttgcaagcaaaata
ttcatGAGGCTGTGCACTTGATTTGTAAGtaaagtaccttatcggggaaa
acttcgtcggggaaaaattcgtcacttgctggtagttggtaaacgcatta
agacCAGgggaaattttcgtcggggaaaatattcgtcacttgtccaaaat
ttcgtcatttttccccgacgaagttttcctcGATAAGGTATACGGTGTGT
TCTTTAAACTGGTGATTGGTTCATTCTTTCAGTGTCCATTCTACAGTTCA
TTGATGGGCGAACTcatcactaaaatcaaatcgGAGCCGTAAGTTTATGG
GgttaaactttgttttgataggCTTACGAAAGACTAGACAGCGAATTCTT
AGCAAATTCAACAATTTAATCATTACTCAATATCAATTATTTGATATTTC
CATTTTTATCTACCAAAACGTGAAATTGTCTAACTTATGGTTCAGCTTCA
TTCAATATACCAATATTAGTTAtatcaaagatttattatacactggataa
acgactcataaaacgatggagagcgaccattgtatttcctttgtttcaga
aaacaattgatgttctagctttgtccgcaaaggacaactgtcatggcggc
tcgaagatttctaattttttaaaatgtttatcagacttatttttaaaaag
ttctctagctctttctttttgtacatttgctgaaaaaaagtttgaaagta
aggctagcattccaagctggatacatttgtaaaatctaatgtgagaaaaa
catcattagacaataaattcagacaaaatgcttatagtgacacgaaatct
TTAATGGGAAATAtatttccaagactgtccccagaagagctgaaattaac
atacataagacttgagtgtcttgactccactgtggtatgaaaatcttttg
gaggcacgtggtggcaaggtggtttttttgaggttgaagtttgaaaattt
ccggtgtcaacattaaatttcttatacNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGTTATATCAAATCTCTACTTCTTTATTTTAGACT
GGTGTTTCCAGAAAGTCCCATCGTCAACCCACAAGCCAAAGATCTGATAT
CAAGGATGTTGGCGAAAGATCCTAAAGAAAGAATAACCGTTCTTGAAATG
AAGGTATTCTTATCATGTTTGTCTTGTACTAATCAATTTTTTATGCGTTC
AAACTTAAACTTAATGAACAACCAAGGAAAGCTAATttgtcaaaattaca
aaatttgcaacgcgaaatgaattttaaaatttgaagacaTAACAGCCAAA
CAGTCACAAATGCTTCTTGAATTTGATTAAAACTgctttttcttaacttt
tttgaatacttcgccaccattttagtttagtgtttatccagagtctcttt
CATAATTCCATACTATAGTAACCAACTTCGAGTTACTCACCCTTTCAGGA
GCATCACTGGGTAACAGATGGTGGTCGTGTTACATTAGCAGCAACCGAAG
ATCATTGTACTGTTATTGAAGTCACTGATGAAGAAGTCAAAAATAGCGTT
AAAATTATCTCCAAACTTTCAAGTCTCGTAAGTTAGAAATTGTATCTAAA
TCAGATTAATTTTCGCAATCGACTAGGTTATTTTATTGTTatgtaaattt
gtttacttgTTTGCAGAATTAGATCTCGTGAAGTAAAATACAGAAAACTT
CACAATCCTTTAGctcttaaaataaaatttcgcgaaatcaGATCCGATTA
AGTTTAACAGACAGCTCCTTGTCCTAAAAGTCTTGGATAATTTTTTGGTT
CGGGTATTAAAGGAGATCTAACGGCAAAAATTTTGctacattttttttgg
aaattatggaaACTTTATATTGTGGGGATTAAAATGAGCTATATTATGTT
GAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNaagacccggtaggattttttcaaccaGTGAGGGTGAAACTAAGGGACT
GTTGGAAcatgatggggattgatattttttatgactggggacagtggcgt
tgtgggaaaatttttctggaggggccaaagtcaattttttttaaatggcg
cccccctcccccaattttccaaagtgatGTCCCCACCCaccattttctaa
acttttactaattcatttgcctaggcataatgaggaaggaaatatttagt
ggagaaTAAGAGAgtagatttatctttgatgaatggaaaagggataaaca
ggccccaccatggttggggacgactgaaaaattgtttttaaatcgactgc
caagaaaccctaaatcactaaataaacaaagacaaatttgacacttgcta
gagtgaaaaggaacttaaagaaacaatctttaatgcgagcgaagcgagcg
aaaaaattgatgttttatgatttcaatattgttgtcagcatattggtgca
gttagattttcatttaataatgctatattgtacacaaaaaaaacttgtaa
attagctacATTAGAAGTTACCTATtaactgtattgcgagcgaagcgagc
gaaaaaaattacaagaattttaaaattatctcagtaaagtTGGTCCTCGG
CGCAATTTAAGGTGcataaagtataatttttaaaattggggcgtttaaaa
aaatctctattggcgccccttgctcttcagcgccccttcaaaaaagctcc
gctgggggggccatggcccccctggccccccctgccacaacgccactggt
aCTAAAATcttcagacatcatgacatttagtgacgtggtggtactgcaaa
aaagttcaaaaataattttagtaccatgtgtactaaaataccaaaaagag
tggtcccttaaagaaatttttgaaaaatcttagtattttgttctaaaatc
agccaaaatggagcatttttttaacaattttggaaaaaatttgatttttt
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ccccccccgtttaaaCAATGATAATTCAATCAATATGAAAGATTTAGCAC
TCGTtctttttgcaatgttttttatttaattaggCCTGTACtctgtcaaa
aaataaggataaagaaatttttgccgTTAGATCTCCTTTAATGAAGAAAA
TTTAAGTGGTTttacttaaggccggtctccacttgcgcgcgctttgatcg
tactttttcgagcaaagcttccacgctattggtcaaaagaaaaatgaagc
aattccattggcgcgatctgacgtaacggttgaaaaaagttgaaatgtgt
tcaattttttttttgagcgcgcgctacatttttatgacgtaatctttttt
tccaagcaaaaagaattgaagccaaaatgtgcgatcgcagcgcacgcaag
tggagaccggcctttatacATAATTAGAGAGAGGAATACTTTTCCATCGT
GAATTATGGCtggttttctttgaaaaaaaaatttcacctgATTTTTCTTC
CATGTGATTTTTTCAACGCTTTGATCACTGAGTTAGATTCTACCGGGTCA
ATTCTATAGCTAAAGGGGTGGCTATTCCACTTAAATTAAGTTATgcttca
tttcttttttccaggtATTCGCAAAATCCATATTAAAAGGTCGATCTTTC
GTCCCTGGCagaggaaagaaaaacaaatggaAGAGAAATCACTCCTTACC
AACCCCTAATTTATGATAATTCAtgttaatttattttcaaatcattaACC
ATGTACGCACTTCATGGTTTCGTTGCGTTGGAAAAACCAAACGAAGCTAT
CTTATCGGTCTAtctaaagggataatcagatggtttgtaatattttgcat
gtgggatccttctattgtcctgagcaaaatctcaaaatatttttgcctta
ctattttccaaagtcgagatatttaagttacaaggttttggcttttagga
tgaaaacaatagaatttcaacgtaagaacccattttcaaaaatttcaaat
tttgatatcttgattttagaaaattgttacacaaaaTACTTTGGGGTTTT
ACTCAGGACCGTAGAAGGTTTCTACTACAggtcaaatatctcaaaccatc
tgattatctctTTAAGGAGTAACGCCATTTTAAGCCAATAGAATGAGTTT
CGTTTCTTTTCGTGGAACAAAACGGCACGTAATACATGGGAACATAGACT
TGATAACAAGGCCTGGTACTTTAAGTATTTCTAACgtttttttaacgttt
tgagGTGAAAATGGTGCGTAAAGGTATCTTTGTCACATTGGTCATTGACA
ACTGCTGGAACataacgttgttttgacgttcatCTGGCGTATGCTATGGA
CGTTGACAATTTGACCTAGCCAGTACTTAAGAGACCAGGAAACACAAAAT
CTTTAAAGGTAGACTAAAGATATAAACAAATTTAGACAAAAGTAAAACCA
TTCTTAAACATTTGGTTCAATTGGCTCCAAAGAAATAATTATCTTCATTG
GTCAAAACTCCATTGCATTTTTATGTACATACTAATGTTTTTGTCGAATA
TATTTTTATGTAAATATTCTACTATTTTGATACTTCCCTCTATATATGAa
ttgttgtttttaaaattttattagatAAAGTATCATttacaaaatgaaga
aaatactttttttaattttgc Coding sequence (CDS) from alignment at scaffold_272:307634..316604+ >TCONS_00056325 ID=TCONS_00056325|Name=TCONS_00056325|organism=Clytia hemisphaerica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_272:307634..316604+ (Clytia hemisphaerica) GATTCCAGAGACAAATATAGCGGCAAAGCAGTTGATGTTTGGGCAATGGG GATaacattattttgttttctttacgGCAAGTGTCCATTCTACAGTTCAT TGATGGGCGAACTcatcactaaaatcaaatcgGAGCCACTGGTGTTTCCA GAAAGTCCCATCGTCAACCCACAAGCCAAAGATCTGATATCAAGGATGTT GGCGAAAGATCCTAAAGAAAGAATAACCGTTCTTGAAATGAAGGAGCATC ACTGGGTAACAGATGGTGGTCGTGTTACATTAGCAGCAACCGAAGATCAT TGTACTGTTATTGAAGTCACTGATGAAGAAGTCAAAAATAGCGTTAAAAT TATCTCCAAACTTTCAAGTCTCgtATTCGCAAAATCCATATTAAAAGGTC GATCTTTCGTCCCTGGCagaggaaagaaaaacaaatggaAGAGAAATCAC TCCTTACCAACCCCTAATTTATGAGATTCCAGAGACAAATATAGCGGCAA AGCAGTTGATGTTTGGGCAATGGGGATaacattattttgttttctttacg GCAAGTGTCCATTCTACAGTTCATTGATGGGCGAACTcatcactaaaatc aaatcgGAGCCACTGGTGTTTCCAGAAAGTCCCATCGTCAACCCACAAGC CAAAGATCTGATATCAAGGATGTTGGCGAAAGATCCTAAAGAAAGAATAA CCGTTCTTGAAATGAAGGAGCATCACTGGGTAACAGATGGTGGTCGTGTT ACATTAGCAGCAACCGAAGATCATTGTACTGTTATTGAAGTCACTGATGA AGAAGTCAAAAATAGCGTTAAAATTATCTCCAAACTTTCAAGTCTCgtAT TCGCAAAATCCATATTAAAAGGTCGATCTTTCGTCCCTGGCagaggaaag aaaaacaaatggaAGAGAAATCACTCCTTACCAACCCCTAATTTATGAGA TTCCAGAGACAAATATAGCGGCAAAGCAGTTGATGTTTGGGCAATGGGGA TaacattattttgttttctttacgGCAAGTGTCCATTCTACAGTTCATTG ATGGGCGAACTcatcactaaaatcaaatcgGAGCCACTGGTGTTTCCAGA AAGTCCCATCGTCAACCCACAAGCCAAAGATCTGATATCAAGGATGTTGG CGAAAGATCCTAAAGAAAGAATAACCGTTCTTGAAATGAAGGAGCATCAC TGGGTAACAGATGGTGGTCGTGTTACATTAGCAGCAACCGAAGATCATTG TACTGTTATTGAAGTCACTGATGAAGAAGTCAAAAATAGCGTTAAAATTA TCTCCAAACTTTCAAGTCTCgtATTCGCAAAATCCATATTAAAAGGTCGA TCTTTCGTCCCTGGCagaggaaagaaaaacaaatggaAGAGAAATCACTC CTTACCAACCCCTAATTTATGAGATTCCAGAGACAAATATAGCGGCAAAG CAGTTGATGTTTGGGCAATGGGGATaacattattttgttttctttacgGC AAGTGTCCATTCTACAGTTCATTGATGGGCGAACTcatcactaaaatcaa atcgGAGCCACTGGTGTTTCCAGAAAGTCCCATCGTCAACCCACAAGCCA AAGATCTGATATCAAGGATGTTGGCGAAAGATCCTAAAGAAAGAATAACC GTTCTTGAAATGAAGGAGCATCACTGGGTAACAGATGGTGGTCGTGTTAC ATTAGCAGCAACCGAAGATCATTGTACTGTTATTGAAGTCACTGATGAAG AAGTCAAAAATAGCGTTAAAATTATCTCCAAACTTTCAAGTCTCgtATTC GCAAAATCCATATTAAAAGGTCGATCTTTCGTCCCTGGCagaggaaagaa aaacaaatggaAGAGAAATCACTCCTTACCAACCCCTAATTTATGAGATT CCAGAGACAAATATAGCGGCAAAGCAGTTGATGTTTGGGCAATGGGGATa acattattttgttttctttacgGCAAGTGTCCATTCTACAGTTCATTGAT GGGCGAACTcatcactaaaatcaaatcgGAGCCACTGGTGTTTCCAGAAA GTCCCATCGTCAACCCACAAGCCAAAGATCTGATATCAAGGATGTTGGCG AAAGATCCTAAAGAAAGAATAACCGTTCTTGAAATGAAGGAGCATCACTG GGTAACAGATGGTGGTCGTGTTACATTAGCAGCAACCGAAGATCATTGTA CTGTTATTGAAGTCACTGATGAAGAAGTCAAAAATAGCGTTAAAATTATC TCCAAACTTTCAAGTCTCgtATTCGCAAAATCCATATTAAAAGGTCGATC TTTCGTCCCTGGCagaggaaagaaaaacaaatggaAGAGAAATCACTCCT TACCAACCCCTAATTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056325-exon-scaffold_272-1491911889:307634..307714 | TCONS_00056325-exon-scaffold_272-1491911889:307634..307714 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1510915933:307634..307714 | TCONS_00056325-exon-scaffold_272-1510915933:307634..307714 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1575043694:307634..307714 | TCONS_00056325-exon-scaffold_272-1575043694:307634..307714 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1491911889:308166..308221 | TCONS_00056325-exon-scaffold_272-1491911889:308166..308221 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1510915933:308166..308221 | TCONS_00056325-exon-scaffold_272-1510915933:308166..308221 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1575043694:308166..308221 | TCONS_00056325-exon-scaffold_272-1575043694:308166..308221 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1491911889:309681..309786 | TCONS_00056325-exon-scaffold_272-1491911889:309681..309786 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1510915933:309681..309786 | TCONS_00056325-exon-scaffold_272-1510915933:309681..309786 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1575043694:309681..309786 | TCONS_00056325-exon-scaffold_272-1575043694:309681..309786 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1491911889:310082..310210 | TCONS_00056325-exon-scaffold_272-1491911889:310082..310210 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1510915933:310082..310210 | TCONS_00056325-exon-scaffold_272-1510915933:310082..310210 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1575043694:310082..310210 | TCONS_00056325-exon-scaffold_272-1575043694:310082..310210 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1491911889:315548..316604 | TCONS_00056325-exon-scaffold_272-1491911889:315548..316604 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1510915933:315548..316604 | TCONS_00056325-exon-scaffold_272-1510915933:315548..316604 | Clytia hemisphaerica | exon |
TCONS_00056325-exon-scaffold_272-1575043694:315548..316604 | TCONS_00056325-exon-scaffold_272-1575043694:315548..316604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_272 | supercontig | scaffold_272:307634..316604 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004672 | protein kinase activity |
GO:0005524 | ATP binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006468 |
protein phosphorylation |
molecular_function |
GO:0005524 |
ATP binding |
molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00056325 vs. Swiss-Prot (Human)
Match: KKCC1 (Calcium/calmodulin-dependent protein kinase kinase 1 OS=Homo sapiens GN=CAMKK1 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 8.725e-36 Identity = 75/154 (48.70%), Postives = 108/154 (70.13%), Query Frame = 1 Query: 1 DSRDKYSGKAVDVWAMGITLFCFLYGKCPFYSSLMGELITKIKSEPLVFPESPIVNPQAKDLISRMLAKDPKERITVLEMKEHHWVTDGGRVTLAATEDHCTVIEVTDEEVKNSVKIISKLSSLVFAKSILKGRSF-VPGRGKKNKWKRNHSLP 459
DS +SGKA+DVWA G+TL+CF+YGKCPF + L KIK+EP+VFPE P ++ + KDLI +ML K+P+ RI V ++K H WVT G L + E+HC+V+EVT+EEVKNSV++I ++++ KS+L+ RSF P + + +R+ S P
Sbjct: 324 DSGQSFSGKALDVWATGVTLYCFVYGKCPFIDDFILALHRKIKNEPVVFPEEPEISEELKDLILKMLDKNPETRIGVPDIKLHPWVTKNGEEPLPSEEEHCSVVEVTEEEVKNSVRLIPSWTTVILVKSMLRKRSFGNPFEPQARREERSMSAP 477
The following BLAST results are available for this feature:
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