TCONS_00056368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056368
Unique NameTCONS_00056368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056368 ID=TCONS_00056368|Name=TCONS_00056368|organism=Clytia hemisphaerica|type=transcript|length=399bp
CCCAGTTTCCCGTGACGCGGTCAGAGATTCTTGGAAATTCTTggggggaa
aaaaattcaaaatggtagctaaaatgtaaacaaatcggTAGCGACAGCCA
AATACAAAAgcgaaagtaaataaaaaatataggaaGGTAGAATGAGCGCA
AAGAAGTTAGTTGAATATGTATCTAAATTTACCAAAGAAGAAGCATTAGA
GTGGTTAAAAGACATTGGAATTTCTTCAACAGGCTCCAAAGATGAGCTGA
TCAATCGAATCAAACGTTTTATTCGCTACCCAAAACTTGTAAATAAGCTG
AAGAATAAAGCTAAGAGACATTACAAGTTTTCGTCCAGTTTGAACCCTTT
GGAAATTCCTCCTTCTACTGCAAAGTGGTCCAGTAATCATGATTCATAT
Run BLAST on NCBI

transcript from alignment at scaffold_273:79177..79575

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056368 ID=TCONS_00056368|Name=TCONS_00056368|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at scaffold_273:79177..79575 (Clytia hemisphaerica)
ATATGAATCATGATTACTGGACCACTTTGCAGTAGAAGGAGGAATTTCCA
AAGGGTTCAAACTGGACGAAAACTTGTAATGTCTCTTAGCTTTATTCTTC
AGCTTATTTACAAGTTTTGGGTAGCGAATAAAACGTTTGATTCGATTGAT
CAGCTCATCTTTGGAGCCTGTTGAAGAAATTCCAATGTCTTTTAACCACT
CTAATGCTTCTTCTTTGGTAAATTTAGATACATATTCAACTAACTTCTTT
GCGCTCATTCTACCttcctatattttttatttactttcgcTTTTGTATTT
GGCTGTCGCTAccgatttgtttacattttagctaccattttgaatttttt
tccccccAAGAATTTCCAAGAATCTCTGACCGCGTCACGGGAAACTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035516XLOC_035516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056368-exon-scaffold_273-1491911889:79177..79575TCONS_00056368-exon-scaffold_273-1491911889:79177..79575Clytia hemisphaericaexon
TCONS_00056368-exon-scaffold_273-1510915933:79177..79575TCONS_00056368-exon-scaffold_273-1510915933:79177..79575Clytia hemisphaericaexon
TCONS_00056368-exon-scaffold_273-1575043694:79177..79575TCONS_00056368-exon-scaffold_273-1575043694:79177..79575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:79177..79575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.50526	0	0	0.937853	3.19437	0.791183	0.943018	0.990733	0.842094	0.621689	1.66239	0.788652	0.993479	0	0.434757	0.159165	0.240238	0.706743	0.396986	0	0	0.565319	0.439829	0	0.586961	1.19836	0.443108	0.673741	0	0.520561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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