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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056349 ID=TCONS_00056349|Name=TCONS_00056349|organism=Clytia hemisphaerica|type=transcript|length=3092bp
ATGTCAAATGCTGGCAACCATTGCATTTGGAAGCAGTTTACTCAAGAAAA
AACAAACGACCAAGCAAACATACACTCAAGAATGGCTTCAACAAACAAAG
AACCGTTACCCACAGATGAGAGAAAGGTACAACATTCATCCATCGATAGT
CGAAACAACTCCTTTGACTCTCTCTACCCTGATGGCGATGATCATGGTCT
GATGGCATCAATCGAAAGTCATGGCTCGTTATGGAGGCAATATTCCCTTA
TCAACAAGAAATACCAAGACAATATCAAGTCACAAGATCTATGTTTCTGT
TGCGACAGTGATTCTTTTCGCCATGGAACTTTGAAAACATTATTTCTGCT
TGTGGTTGCATTTGGATTAATTTGCtctttttttgctttgagattATCTG
TTTTCTCAACTCAAAGTGTAACTCTTACAGGAGGTGATCAAAAACTGGTT
CCCATCTCCACTTATTTCAATAAAGGTCTTAAACTAAAGGAGAGTTGTAA
TCAGGTCACCCAGGAAGGCAGCAAATTATATTTGTTACCAGAATCACCAC
AAATATCAGCAGAACGTAAAATTTACACCGAAGCTGTACAATTTCTCATG
CCATCTTGGTCTTATCAATATTGGGGCTTTAGACTCTTGAAAGGAACAGA
GCTGACTATTTCAATATGTGCTGATCTTCACTTACAGTTTTATCTCATTA
AAGGTGAAAGAAAGCTGAAATCATGGAAAGAAACGACTCTTTTCAACGAT
TATGACTTCCAAAGCAATATACGTCCAAAGGAAAGCTGCTCTAAGAAGGA
AAACCTTAAAAGTCACTCAGTACAAGTTCATGAGAGCgatattttctata
ttttgttCTCGAGTTCAGTAGGCTGGCGTTTTTTCACTGAAGTCACTACC
GTCTTGCAATTCAACCGAACAGTATATGATACGTCACAAAGCTATTATTC
TTGCTTACTATCAAATAGTTCTTGCATTGGAGAACTTCATCATGGTTCAG
AGGACATTGCTTTAGTTGAAACAGAACTAGACATCAATCATCCAACGACT
TCATTCAAGAATTACAAAATCTCTTACGAACCTTTACCGAGAAACGAAtt
ctattttaaattgtttGGTTTTGTATATTTGACTGTTGTCTTAGCAACCG
TACTGTACTCTGTATGGCGCTTTTGTGTCACAATCCACGGGAAAGGTCGG
AAAGAGCCAGGAACAAGTGAAGAGCGTAAACCACTGCTCAAAAACACGAA
ACCGCACTCATACTCGTTGAGGAGTCACCCAGGCGGTAAAGATCAATGGC
TCGTTGTCAACCGCTCAAGTGGAGAATCAAACGACTTACGTATAGACGAG
CGAGAAACATCGTCCGTTCTTGAAGAATCTGTTTCGCCGTCACGTCATCG
TCTTATTACGACGACGTCAAATTATTCGACATACAGCAACGAATCTGAAC
AGTCGTTATTTATGAACAGACGTGGTACGAACAATGCTGATATGATGCGT
GCTATGCAACAAAACATGGAACAACAGCAGCTCTTGGATTCTGTCATGAC
GTCTGCAGGTGTCAGTGCTATTTGATTTACTTCTAATCTAACGAATTATC
AAAATGCGTAATGTTAAGATTACCGCCCTAaccgcacgatgggttatttt
ttctcttttgacgccttcaaagagagcaattaatcgttaattgaattaag
agagcaattaatcgttaatcacactcttcaacgaggtgccaatgtttaca
aaatataGTTTAATGTTCTTTCTTtcgtttttttgacttttttgaaagtt
ttcgtTCTAATATTTGTGTCGTCACAAGCAATTTGAAGTACAAATAAAAT
GTAACGTTCTCGGACGTTCCATAGCGTTCATGGAACGTTCCAGATCGTGC
TTAATCGTTCTCAAACGTTTCAGAACATTCAGTAACGCTTAAGAACGTTG
GAACGTTCATGAACGCTCTCGAACGATCATATGCGTCAAAAGGTTAATAA
TGAACTCGATAAGAACGTTCTTGAACTTTTTAGAATGTCCCTAAACGTTC
CAAGACATTCCTACACTAGTAAATAATAGGGAACGCTTAGGAACGTTCAG
GAACGTTCAATAACGTTCCATATCGTTCGTTTTACTGGAACGTatcattt
tatttgtatttaAAGTTGTTTATGATGACAATTTTTGTGCGATAATGATA
ACCGGTTGTAATGGAGATTCGTATTTATACCACCTTCACACGTCATTACA
TGTTACTTACGGAATCAACCAATAGAACGAATTCGTTTTGAGTTGGTACG
AATGATTGTAAAAGGTATTTCTGTATAGGGAGCATATCTATAAGGTTTGc
gaccaatgaagtaaaagcccgaaggactagaatcgaatctttaacctttc
tcaggcaagaaaaagtgaagccttaaaatatgcgccgtatttttgacgac
ggattgaatctagcgattcctTTATTTTAGAGtgatatcttttttcaaat
ttaggtgtaaattttagtttcaatctgtcatttctGTAAAAGCCAGGCGG
ACCGcgctaggccgcgcaactttgttaGGATTTGGTAGGCTttaaatcct
accaaggagattcgattctagctcttcgggcttatacttcgagatgcctt
ggagtttttacaagatacttcactaattggtcacttaaagtgatagagat
gacgcgttctttagaaaaagtaataagattcttttattacatcttaacga
ccaaccaaatcaaataagagcttgtaaaaactccagcttgtccctatACT
TCATTGTTTGCGACTCAGACTTGGAGTGTATCAACTGTACACATGAAATG
TGAACCTCTGTGAACCAAATATGAAATTTATAATGTTGCCGTAAGTAagg
aagaaaagacactttttttattttttgttactgTTAAATTTTTTAAACCA
TAACTTTATATTGGAATATTTTGCTAGATTTTTAGCGCTCAATTTTTTGG
AGTAATATTTTCTAAGCAGTgtgtattttattttctaattacATACCTAT
AATAGataaatttttaaagttaatTTATTCAAGAATCATGAC Run BLAST on NCBI protein sequence of TCONS_00056349-protein >TCONS_00056349-protein ID=TCONS_00056349-protein|Name=TCONS_00056349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp
MSNAGNHCIWKQFTQEKTNDQANIHSRMASTNKEPLPTDERKVQHSSIDS
RNNSFDSLYPDGDDHGLMASIESHGSLWRQYSLINKKYQDNIKSQDLCFC
CDSDSFRHGTLKTLFLLVVAFGLICSFFALRLSVFSTQSVTLTGGDQKLV
PISTYFNKGLKLKESCNQVTQEGSKLYLLPESPQISAERKIYTEAVQFLM
PSWSYQYWGFRLLKGTELTISICADLHLQFYLIKGERKLKSWKETTLFND
YDFQSNIRPKESCSKKENLKSHSVQVHESDIFYILFSSSVGWRFFTEVTT
VLQFNRTVYDTSQSYYSCLLSNSSCIGELHHGSEDIALVETELDINHPTT
SFKNYKISYEPLPRNEFYFKLFGFVYLTVVLATVLYSVWRFCVTIHGKGR
KEPGTSEERKPLLKNTKPHSYSLRSHPGGKDQWLVVNRSSGESNDLRIDE
RETSSVLEESVSPSRHRLITTTSNYSTYSNESEQSLFMNRRGTNNADMMR
AMQQNMEQQQLLDSVMTSAGVSAI Run BLAST on NCBI transcript from alignment at scaffold_273:89994..93876+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056349 ID=TCONS_00056349|Name=TCONS_00056349|organism=Clytia hemisphaerica|type=transcript|length=3883bp|location=Sequence derived from alignment at scaffold_273:89994..93876+ (Clytia hemisphaerica)
ATGTCAAATGCTGGCAACCATTGCATTTGGAAGCAGTTTACTCAAGAAGT
AAGTAAGTTAGTCAGTAAGCTcaagatattttttgatttttacaacTTTG
ATTATATTCTAAGTCTCAGAAAATTAAAAGCAGCTCAGTCCATAGGGTTG
GATCATTGGATAAAGTGCTCAAAACTCTTTGTAACAAGGAATGTATAACC
AGATGTTTTGATAAATGGAATCTAAGTACAAGAATCtcctttcaaaaata
ttgatttttgcaCATATGAAAATCTGATCTAAAACAAGTTgttatcatta
aatttttcattcaaagttcattcaaattcaaacattttcaaattatcaaT
TGTCCTTGGTTTCAAAGATTTTAGTAAAAAAGCAGCTTCCTATACCCGGT
CAAGGGTGACAGCTATGACAAAACGAAtttcaaattcggaatcagcatga
aaaattgattttaaaaagatatcACATCACTAGAAAACTATTCAAAattg
tcaatttaaaaaaattgacttttagcGGTTTTGGGCGGTTTTCCAAAAAA
GGGGTCTCCGGTAGCCGCCCAAGGGTAAGAGATATGGAAAAACGGATTTC
AAATTCGGAATCAcgtgaaaaattaatttaaaaaatatggcTATGTAAAA
ATATAACTCAAAAAGTGTAATTTTGGACCCCCCTCCTACTCAGAGCCTCC
TGCAACTAAACCCaataagataaaaatataatttatttcCAGACAGGTTT
TTgctacaaatttttttcttttcaatagacaCTCAGCATCGTCTTTTCTT
TACTCTTACTTTAAATTATCTATTCTTTTTTATTCCTAGAAAACAAACGA
CCAAGCAAACATACACTCAAGAATGGCTTCAACAAACAAAGAACCGTTAC
CCACAGATGAGAGAAAGGTACAACATTCATCCATCGATAGTCGAAACAAC
TCCTTTGACTCTCTCTACCCTGATGGCGATGATCATGGTCTGATGGCATC
AATCGAAAGTCATGGCTCGTTATGGAGGCAATATTCCCTTATCAACAAGA
AATACCAAGACAATATCAAGTCACAAGATCTATGTTTCTGTTGCGACAGT
GATTCTTTTCGCCATGGAACTTTGAAAACATTATTTCTGCTTGTGGTTGC
ATTTGGATTAATTTGCtctttttttgctttgagattATCTGTTTTCTCAA
CTCAAAGTGTAACTCTTACAGGAGGTGATCAAAAACTGGTTCCCATCTCC
ACTTATTTCAATAAAGGTCTTAAACTAAAGGAGAGTTGTAATCAGGTCAC
CCAGGAAGGCAGCAAATTATATTTGTTACCAGAATCACCACAAATATCAG
CAGAACGTAAAATTTACACCGAAGCTGTACAATTTCTCATGCCATCTTGG
TCTTATCAATATTGGGGCTTTAGACTCTTGAAAGGAACAGAGCTGACTAT
TTCAATATGTGCTGATCTTCACTTACAGTTTTATCTCATTAAAGGTGAAA
GAAAGCTGAAATCATGGAAAGAAACGACTCTTTTCAACGATTATGACTTC
CAAAGCAATATACGTCCAAAGGAAAGCTGCTCTAAGAAGGAAAACCTTAA
AAGTCACTCAGTACAAGTTCATGAGAGCgatattttctatattttgttCT
CGAGTTCAGTAGGCTGGCGTTTTTTCACTGAAGTCACTACCGTCTTGCAA
TTCAACCGAACAGTATATGATACGTCACAAAGCTATTATTCTTGCTTACT
ATCAAATAGTTCTTGCATTGGAGAACTTCATCATGGTTCAGAGGACATTG
CTTTAGTTGAAACAGAACTAGACATCAATCATCCAACGACTTCATTCAAG
AATTACAAAATCTCTTACGAACCTTTACCGAGAAACGAAttctattttaa
attgtttGGTTTTGTATATTTGACTGTTGTCTTAGCAACCGTACTGTACT
CTGTATGGCGCTTTTGTGTCACAATCCACGGGAAAGGTCGGAAAGAGCCA
GGAACAAGTGAAGAGCGTAAACCACTGCTCAAAAACACGAAACCGCACTC
ATACTCGTTGAGGAGTCACCCAGGCGGTAAAGATCAATGGCTCGTTGTCA
ACCGCTCAAGTGGAGAATCAAACGACTTACGTATAGACGAGCGAGAAACA
TCGTCCGTTCTTGAAGAATCTGTTTCGCCGTCACGTCATCGTCTTATTAC
GACGACGTCAAATTATTCGACATACAGCAACGAATCTGAACAGTCGTTAT
TTATGAACAGACGTGGTACGAACAATGCTGATATGATGCGTGCTATGCAA
CAAAACATGGAACAACAGCAGCTCTTGGATTCTGTCATGACGTCTGCAGG
TGTCAGTGCTATTTGATTTACTTCTAATCTAACGAATTATCAAAATGCGT
AATGTTAAGATTACCGCCCTAaccgcacgatgggttattttttctctttt
gacgccttcaaagagagcaattaatcgttaattgaattaagagagcaatt
aatcgttaatcacactcttcaacgaggtgccaatgtttacaaaatataGT
TTAATGTTCTTTCTTtcgtttttttgacttttttgaaagttttcgtTCTA
ATATTTGTGTCGTCACAAGCAATTTGAAGTACAAATAAAATGTAACGTTC
TCGGACGTTCCATAGCGTTCATGGAACGTTCCAGATCGTGCTTAATCGTT
CTCAAACGTTTCAGAACATTCAGTAACGCTTAAGAACGTTGGAACGTTCA
TGAACGCTCTCGAACGATCATATGCGTCAAAAGGTTAATAATGAACTCGA
TAAGAACGTTCTTGAACTTTTTAGAATGTCCCTAAACGTTCCAAGACATT
CCTACACTAGTAAATAATAGGGAACGCTTAGGAACGTTCAGGAACGTTCA
ATAACGTTCCATATCGTTCGTTTTACTGGAACGTatcattttatttgtat
ttaAAGTTGTTTATGATGACAATTTTTGTGCGATAATGATAACCGGTTGT
AATGGAGATTCGTATTTATACCACCTTCACACGTCATTACATGTTACTTA
CGGAATCAACCAATAGAACGAATTCGTTTTGAGTTGGTACGAATGATTGT
AAAAGGTATTTCTGTATAGGGAGCATATCTATAAGGTTTGcgaccaatga
agtaaaagcccgaaggactagaatcgaatctttaacctttctcaggcaag
aaaaagtgaagccttaaaatatgcgccgtatttttgacgacggattgaat
ctagcgattcctTTATTTTAGAGtgatatcttttttcaaatttaggtgta
aattttagtttcaatctgtcatttctGTAAAAGCCAGGCGGACCGcgcta
ggccgcgcaactttgttaGGATTTGGTAGGCTttaaatcctaccaaggag
attcgattctagctcttcgggcttatacttcgagatgccttggagttttt
acaagatacttcactaattggtcacttaaagtgatagagatgacgcgttc
tttagaaaaagtaataagattcttttattacatcttaacgaccaaccaaa
tcaaataagagcttgtaaaaactccagcttgtccctatACTTCATTGTTT
GCGACTCAGACTTGGAGTGTATCAACTGTACACATGAAATGTGAACCTCT
GTGAACCAAATATGAAATTTATAATGTTGCCGTAAGTAaggaagaaaaga
cactttttttattttttgttactgTTAAATTTTTTAAACCATAACTTTAT
ATTGGAATATTTTGCTAGATTTTTAGCGCTCAATTTTTTGGAGTAATATT
TTCTAAGCAGTgtgtattttattttctaattacATACCTATAATAGataa
atttttaaagttaatTTATTCAAGAATCATGAC Coding sequence (CDS) from alignment at scaffold_273:89994..93876+ >TCONS_00056349 ID=TCONS_00056349|Name=TCONS_00056349|organism=Clytia hemisphaerica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_273:89994..93876+ (Clytia hemisphaerica)
ATGTCAAATGCTGGCAACCATTGCATTTGGAAGCAGTTTACTCAAGAAAA
AACAAACGACCAAGCAAACATACACTCAAGAATGGCTTCAACAAACAAAG
AACCGTTACCCACAGATGAGAGAAAGGTACAACATTCATCCATCGATAGT
CGAAACAACTCCTTTGACTCTCTCTACCCTGATGGCGATGATCATGGTCT
GATGGCATCAATCGAAAGTCATGGCTCGTTATGGAGGCAATATTCCCTTA
TCAACAAGAAATACCAAGACAATATCAAGTCACAAGATCTATGTTTCTGT
TGCGACAGTGATTCTTTTCGCCATGGAACTTTGAAAACATTATTTCTGCT
TGTGGTTGCATTTGGATTAATTTGCtctttttttgctttgagattATCTG
TTTTCTCAACTCAAAGTGTAACTCTTACAGGAGGTGATCAAAAACTGGTT
CCCATCTCCACTTATTTCAATAAAGGTCTTAAACTAAAGGAGAGTTGTAA
TCAGGTCACCCAGGAAGGCAGCAAATTATATTTGTTACCAGAATCACCAC
AAATATCAGCAGAACGTAAAATTTACACCGAAGCTGTACAATTTCTCATG
CCATCTTGGTCTTATCAATATTGGGGCTTTAGACTCTTGAAAGGAACAGA
GCTGACTATTTCAATATGTGCTGATCTTCACTTACAGTTTTATCTCATTA
AAGGTGAAAGAAAGCTGAAATCATGGAAAGAAACGACTCTTTTCAACGAT
TATGACTTCCAAAGCAATATACGTCCAAAGGAAAGCTGCTCTAAGAAGGA
AAACCTTAAAAGTCACTCAGTACAAGTTCATGAGAGCgatattttctata
ttttgttCTCGAGTTCAGTAGGCTGGCGTTTTTTCACTGAAGTCACTACC
GTCTTGCAATTCAACCGAACAGTATATGATACGTCACAAAGCTATTATTC
TTGCTTACTATCAAATAGTTCTTGCATTGGAGAACTTCATCATGGTTCAG
AGGACATTGCTTTAGTTGAAACAGAACTAGACATCAATCATCCAACGACT
TCATTCAAGAATTACAAAATCTCTTACGAACCTTTACCGAGAAACGAAtt
ctattttaaattgtttGGTTTTGTATATTTGACTGTTGTCTTAGCAACCG
TACTGTACTCTGTATGGCGCTTTTGTGTCACAATCCACGGGAAAGGTCGG
AAAGAGCCAGGAACAAGTGAAGAGCGTAAACCACTGCTCAAAAACACGAA
ACCGCACTCATACTCGTTGAGGAGTCACCCAGGCGGTAAAGATCAATGGC
TCGTTGTCAACCGCTCAAGTGGAGAATCAAACGACTTACGTATAGACGAG
CGAGAAACATCGTCCGTTCTTGAAGAATCTGTTTCGCCGTCACGTCATCG
TCTTATTACGACGACGTCAAATTATTCGACATACAGCAACGAATCTGAAC
AGTCGTTATTTATGAACAGACGTGGTACGAACAATGCTGATATGATGCGT
GCTATGCAACAAAACATGGAACAACAGCAGCTCTTGGATTCTGTCATGAC
GTCTGCAGGTGTCAGTGCTATTTGAATGTCAAATGCTGGCAACCATTGCA
TTTGGAAGCAGTTTACTCAAGAAAAAACAAACGACCAAGCAAACATACAC
TCAAGAATGGCTTCAACAAACAAAGAACCGTTACCCACAGATGAGAGAAA
GGTACAACATTCATCCATCGATAGTCGAAACAACTCCTTTGACTCTCTCT
ACCCTGATGGCGATGATCATGGTCTGATGGCATCAATCGAAAGTCATGGC
TCGTTATGGAGGCAATATTCCCTTATCAACAAGAAATACCAAGACAATAT
CAAGTCACAAGATCTATGTTTCTGTTGCGACAGTGATTCTTTTCGCCATG
GAACTTTGAAAACATTATTTCTGCTTGTGGTTGCATTTGGATTAATTTGC
tctttttttgctttgagattATCTGTTTTCTCAACTCAAAGTGTAACTCT
TACAGGAGGTGATCAAAAACTGGTTCCCATCTCCACTTATTTCAATAAAG
GTCTTAAACTAAAGGAGAGTTGTAATCAGGTCACCCAGGAAGGCAGCAAA
TTATATTTGTTACCAGAATCACCACAAATATCAGCAGAACGTAAAATTTA
CACCGAAGCTGTACAATTTCTCATGCCATCTTGGTCTTATCAATATTGGG
GCTTTAGACTCTTGAAAGGAACAGAGCTGACTATTTCAATATGTGCTGAT
CTTCACTTACAGTTTTATCTCATTAAAGGTGAAAGAAAGCTGAAATCATG
GAAAGAAACGACTCTTTTCAACGATTATGACTTCCAAAGCAATATACGTC
CAAAGGAAAGCTGCTCTAAGAAGGAAAACCTTAAAAGTCACTCAGTACAA
GTTCATGAGAGCgatattttctatattttgttCTCGAGTTCAGTAGGCTG
GCGTTTTTTCACTGAAGTCACTACCGTCTTGCAATTCAACCGAACAGTAT
ATGATACGTCACAAAGCTATTATTCTTGCTTACTATCAAATAGTTCTTGC
ATTGGAGAACTTCATCATGGTTCAGAGGACATTGCTTTAGTTGAAACAGA
ACTAGACATCAATCATCCAACGACTTCATTCAAGAATTACAAAATCTCTT
ACGAACCTTTACCGAGAAACGAAttctattttaaattgtttGGTTTTGTA
TATTTGACTGTTGTCTTAGCAACCGTACTGTACTCTGTATGGCGCTTTTG
TGTCACAATCCACGGGAAAGGTCGGAAAGAGCCAGGAACAAGTGAAGAGC
GTAAACCACTGCTCAAAAACACGAAACCGCACTCATACTCGTTGAGGAGT
CACCCAGGCGGTAAAGATCAATGGCTCGTTGTCAACCGCTCAAGTGGAGA
ATCAAACGACTTACGTATAGACGAGCGAGAAACATCGTCCGTTCTTGAAG
AATCTGTTTCGCCGTCACGTCATCGTCTTATTACGACGACGTCAAATTAT
TCGACATACAGCAACGAATCTGAACAGTCGTTATTTATGAACAGACGTGG
TACGAACAATGCTGATATGATGCGTGCTATGCAACAAAACATGGAACAAC
AGCAGCTCTTGGATTCTGTCATGACGTCTGCAGGTGTCAGTGCTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056349-exon-scaffold_273-1491911889:89994..90041 | TCONS_00056349-exon-scaffold_273-1491911889:89994..90041 | Clytia hemisphaerica | exon |
| TCONS_00056349-exon-scaffold_273-1510915933:89994..90041 | TCONS_00056349-exon-scaffold_273-1510915933:89994..90041 | Clytia hemisphaerica | exon |
| TCONS_00056349-exon-scaffold_273-1575043694:89994..90041 | TCONS_00056349-exon-scaffold_273-1575043694:89994..90041 | Clytia hemisphaerica | exon |
| TCONS_00056349-exon-scaffold_273-1491911889:90833..93876 | TCONS_00056349-exon-scaffold_273-1491911889:90833..93876 | Clytia hemisphaerica | exon |
| TCONS_00056349-exon-scaffold_273-1510915933:90833..93876 | TCONS_00056349-exon-scaffold_273-1510915933:90833..93876 | Clytia hemisphaerica | exon |
| TCONS_00056349-exon-scaffold_273-1575043694:90833..93876 | TCONS_00056349-exon-scaffold_273-1575043694:90833..93876 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_273 | supercontig | scaffold_273:89994..93876 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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