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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056358 ID=TCONS_00056358|Name=TCONS_00056358|organism=Clytia hemisphaerica|type=transcript|length=3162bpRun BLAST on NCBI protein sequence of TCONS_00056358-protein >TCONS_00056358-protein ID=TCONS_00056358-protein|Name=TCONS_00056358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp MGPTMIPLLKEKVDELFLHWFSEVETQQNLRKELSNILGTHDEIVPISTPRun BLAST on NCBI transcript from alignment at scaffold_273:96075..107510- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056358 ID=TCONS_00056358|Name=TCONS_00056358|organism=Clytia hemisphaerica|type=transcript|length=11436bp|location=Sequence derived from alignment at scaffold_273:96075..107510- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_273:96075..107510- >TCONS_00056358 ID=TCONS_00056358|Name=TCONS_00056358|organism=Clytia hemisphaerica|type=CDS|length=21801bp|location=Sequence derived from alignment at scaffold_273:96075..107510- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056358 vs. Swiss-Prot (Human)
Match: P2R3B (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta OS=Homo sapiens GN=PPP2R3B PE=1 SV=2) HSP 1 Score: 507.679 bits (1306), Expect = 4.802e-167 Identity = 250/518 (48.26%), Postives = 344/518 (66.41%), Query Frame = 2
Query: 392 GPTMIPLLKEKVDELFLHWFSEVETQQNLRKELSNILGT-HDEIVPISTPFLTSSPHGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSR-KGSRKNPRRRT-QEEQKPALYPGCAEKLKPFYFPFGEPRTLENEGNTVNSITTYFDRLKNQTATMDDFPQLMKICGAPLYWKYPYFLACGGNKSNTITCKKFIATWKHVNTKYHDEASRFFHLLSKDSQKHLTYDDFEGLLQDIINTHPGLKFLLDAPEFHSRYIITVVARIFYTINRSWNGKLSLTELRRSNFLTVLKTLEEEEDINQVVDFFSYEHFYVIYCKFWELDTDHDMVISKDDLSRYSNGAVSLRMIDRLFSGCVTRDQSL-KEGKMLYVDFIWFILSEVDKASPTGMEYWFRCMDMDGDGVISMYELQYFYEDQLQKMIELGMETLSFQDCLCQMLDLVKPSHPYQVTLRDLKKCKLAPVFFDTFFNLEKWLEHEQKDPFQASRN-ENGEPEVSAWERYVGEEYELLVAEEGASQ 1930
G + P+LK KVDELFL+W SE TQ+ L+ L I D+ P + P PP PG + + +G+R++ R Q ++ L P ++ + FYFP G P+ N ++ I + F R ++ ATMDD + K CG PLYWK P F GG ++ +++ KF+A W+ + HD+A++F HLL +L +DF LQD++NTHPGL FL +A EFHSRYI TV+ RIFY +NRSW+G+++ ELRRS+FL + LEEE DINQ+ +FFSYEHFYVIYCKFWELDTDHD++I DDL+R+++ A+S +MIDR+FSG VTR + + KEGK+ Y DF+WF++SE DK +PT +EYWFRCMD+DGDG +SM+EL+YFYE+Q +++ + +E L FQDCLCQMLDLVKP ++TL+DLK+CKLA VFFDTFFN+EK+L+HEQK+ R+ ++G PE+S WE+Y EEY++LVAEE A +
Sbjct: 4 GKVLQPVLKMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKGPLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEEEADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAVTRGRKVQKEGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETAGE 521 The following BLAST results are available for this feature:
BLAST of TCONS_00056358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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