TCONS_00056370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056370
Unique NameTCONS_00056370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056370 ID=TCONS_00056370|Name=TCONS_00056370|organism=Clytia hemisphaerica|type=transcript|length=416bp
NTACCAGTGTACACTTGCtgctatcttttttgaaaataactttgacAAGG
AATCAATaataaactttgaaataaaTCAAGTACTCTCACCTATAGAAGAT
GATGAAAGAAAGTTGAGACTGATCGAGATCTTCTTGCTTCTTCTCCATAG
GCTATTTCAGGGTCGCGGTGCATCTTGGGTAATCAGGATCAATTGGGTCA
AACATGAAACCACTTAGCCAGCTACTAGTGCGAAGCTGCTTTAACATTTC
ATAAAATTGCTCACAGTACGCTTCGGAAGAGGTGGCGCAATATAAGGGAG
ACAACGGCTGATGTAATAATTATAGCGCAGCTCGGCGCATACACATTCTT
GTTTCTGATTTTCTAAGTCAAATCGGGAAAATCGGAATTAAACTGAGGAG
TCTTAACGACGACCGG
Run BLAST on NCBI

transcript from alignment at scaffold_273:208390..208805

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056370 ID=TCONS_00056370|Name=TCONS_00056370|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at scaffold_273:208390..208805 (Clytia hemisphaerica)
CCGGTCGTCGTTAAGACTCCTCAGTTTAATTCCGATTTTCCCGATTTGAC
TTAGAAAATCAGAAACAAGAATGTGTATGCGCCGAGCTGCGCTATAATTA
TTACATCAGCCGTTGTCTCCCTTATATTGCGCCACCTCTTCCGAAGCGTA
CTGTGAGCAATTTTATGAAATGTTAAAGCAGCTTCGCACTAGTAGCTGGC
TAAGTGGTTTCATGTTTGACCCAATTGATCCTGATTACCCAAGATGCACC
GCGACCCTGAAATAGCCTATGGAGAAGAAGCAAGAAGATCTCGATCAGTC
TCAACTTTCTTTCATCATCTTCTATAGGTGAGAGTACTTGAtttatttca
aagtttattATTGATTCCTTgtcaaagttattttcaaaaaagatagcaGC
AAGTGTACACTGGTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035518XLOC_035518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056370-exon-scaffold_273-1491911889:208390..208805TCONS_00056370-exon-scaffold_273-1491911889:208390..208805Clytia hemisphaericaexon
TCONS_00056370-exon-scaffold_273-1510915933:208390..208805TCONS_00056370-exon-scaffold_273-1510915933:208390..208805Clytia hemisphaericaexon
TCONS_00056370-exon-scaffold_273-1575043694:208390..208805TCONS_00056370-exon-scaffold_273-1575043694:208390..208805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:208390..208805 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.370532	0.185531	0.194057	0	0.251472	0.207149	1.05476	0.412576	0.312241	0.715585	0	0	0.113986	0.118376	0.114508	0.227511	0.682371	0	0	0.2093	0.16571	0	0.196512	0	0.695106	0.492684	0.940039	0	0.395771	0.445957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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