TCONS_00056372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056372
Unique NameTCONS_00056372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056372 ID=TCONS_00056372|Name=TCONS_00056372|organism=Clytia hemisphaerica|type=transcript|length=604bp
NNTAATTAAACCGCTGTGTATGGTGGTTCCATTGACATTAATTGCTGCTA
CGCCAGTTGGTGCAAGAACTAAAACTCTTTCTTTTGTGGGTTCCCCTCCT
CTGTACATAAGAAGTTTTGACAAAGAATGATAGATTGTTGTGAGTAAATG
GCTTTTTCCTACGCCTACGCCTCCACCACCAGTTAAGAAAATATGAAATG
GCTCAATACATTTAGGCACTTTTGAAGAAAGGTTTTTAACGAAATCTCTT
CCCCATTTGTGAACTACATCAAAAACTTCTCTTTGTTGGTGATTTAGAGA
TCTAATACGAGCATTTACTTCATTATCtgggagcaaaattgattccatTG
GAATTGAAGCTCTGGCATGAGTAGTGTCATTGTTATTTTCATCATCTGAT
TCTTCATTATTGTTTGCTCTACTTTGAAGCTCTGCATTTGTTTCATCATT
CTCCTACTGTTCAAAATCATTCATATTGAGAATCAAATCATTTCTGTACC
TTTCTAATGCATTATCTACTAAACCAGCATAAGGTTGGATCAAAGCTCTG
TTTCTCTCAATCCTTTCAATGACACCTGGTTCCAATAGCTTTGCAGTATA
ATTA
Run BLAST on NCBI

protein sequence of TCONS_00056372-protein

>TCONS_00056372-protein ID=TCONS_00056372-protein|Name=TCONS_00056372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MESILLPDNEVNARIRSLNHQQREVFDVVHKWGRDFVKNLSSKVPKCIEP
FHIFLTGGGGVGVGKSHLLTTIYHSLSKLLMYRGGEPTKERVLVLAPTGV
AAINVNGTTIHSGLIX
Run BLAST on NCBI

transcript from alignment at scaffold_273:213247..213850

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056372 ID=TCONS_00056372|Name=TCONS_00056372|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at scaffold_273:213247..213850 (Clytia hemisphaerica)
TAATTATACTGCAAAGCTATTGGAACCAGGTGTCATTGAAAGGATTGAGA
GAAACAGAGCTTTGATCCAACCTTATGCTGGTTTAGTAGATAATGCATTA
GAAAGGTACAGAAATGATTTGATTCTCAATATGAATGATTTTGAACAGTA
GGAGAATGATGAAACAAATGCAGAGCTTCAAAGTAGAGCAAACAATAATG
AAGAATCAGATGATGAAAATAACAATGACACTACTCATGCCAGAGCTTCA
ATTCCAatggaatcaattttgctcccaGATAATGAAGTAAATGCTCGTAT
TAGATCTCTAAATCACCAACAAAGAGAAGTTTTTGATGTAGTTCACAAAT
GGGGAAGAGATTTCGTTAAAAACCTTTCTTCAAAAGTGCCTAAATGTATT
GAGCCATTTCATATTTTCTTAACTGGTGGTGGAGGCGTAGGCGTAGGAAA
AAGCCATTTACTCACAACAATCTATCATTCTTTGTCAAAACTTCTTATGT
ACAGAGGAGGGGAACCCACAAAAGAAAGAGTTTTAGTTCTTGCACCAACT
GGCGTAGCAGCAATTAATGTCAATGGAACCACCATACACAGCGGTTTAAT
TANN

Coding sequence (CDS) from alignment at scaffold_273:213247..213850

>TCONS_00056372 ID=TCONS_00056372|Name=TCONS_00056372|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_273:213247..213850 (Clytia hemisphaerica)
atggaatcaattttgctcccaGATAATGAAGTAAATGCTCGTATTAGATC
TCTAAATCACCAACAAAGAGAAGTTTTTGATGTAGTTCACAAATGGGGAA
GAGATTTCGTTAAAAACCTTTCTTCAAAAGTGCCTAAATGTATTGAGCCA
TTTCATATTTTCTTAACTGGTGGTGGAGGCGTAGGCGTAGGAAAAAGCCA
TTTACTCACAACAATCTATCATTCTTTGTCAAAACTTCTTATGTACAGAG
GAGGGGAACCCACAAAAGAAAGAGTTTTAGTTCTTGCACCAACTGGCGTA
GCAGCAATTAATGTCAATGGAACCACCATACACAGCGGTTTAATTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035520XLOC_035520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056372-exon-scaffold_273-1491911889:213247..213850TCONS_00056372-exon-scaffold_273-1491911889:213247..213850Clytia hemisphaericaexon
TCONS_00056372-exon-scaffold_273-1510915933:213247..213850TCONS_00056372-exon-scaffold_273-1510915933:213247..213850Clytia hemisphaericaexon
TCONS_00056372-exon-scaffold_273-1575043694:213247..213850TCONS_00056372-exon-scaffold_273-1575043694:213247..213850Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056372-proteinTCONS_00056372-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:213247..213850 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.57782	1.36526	2.2132	1.43732	1.65121	1.73962	3.43379	2.57296	1.01113	1.7258	3.29706	2.40624	0.894139	2.58004	0.602281	1.02686	0.959671	0.765695	0.914122	1.50216	2.20004	2.10845	1.03434	0.506934	4.16329	3.59004	0.606915	1.38071	1.19651	0.984417
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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