Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056466 ID=TCONS_00056466|Name=TCONS_00056466|organism=Clytia hemisphaerica|type=transcript|length=1429bp GTTCAATTGACAGATACTTAAGGAGCCGACATGAAGTGGTTTATCATATT GACAAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGG ATTACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAG TTCGGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCC GTTTCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAG AAAGATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCA GAACTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATC TCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAAC AAAGACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTC GAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAG TCTCAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGAC GCGAGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGA AAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAA CGGAAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGC TGAACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGAC AACGAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAA ACCGCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACG ACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAA ATCCATGAGCAAGACCTTGCTGCATCTCGAAGAGTCGAAGGAAAACGGTT TGGAGAGCAAAGACGAGATTATCACCCAAGAGGAAGATACTTGAATGATG ATGATGTTTTCAACGACTTGCCGTCAAGAGAAGAAAAATACATCTAATGA GCAATTAACCAAGATAACCCAAACAATCCATTAACTTGTTTGAACTATTG CTAACGACATTCTAAATTGTGTATTTGATACACAAGATAACCCAAACAAT CCATTAACTTGTTTGAACTATTGCTAACGACATTCTAAATTGTGTATTTG ATACATACTTAAACGAGCTTAAAATTTCGATATATAGGAATTTTATTgag tttataaagaaaaataaatggaatcaaatcatgaaaatattcACGCCCCG TATTTCCTTTAAAACTAAgcttctacaatcatggtcaagatctattgaga atttagcttccttgtttttcgaaatttggagttcgggcgaaaaTTGCcta ttttgggccatctcttaaatttaatcgga Run BLAST on NCBI transcript from alignment at scaffold_276:28436..31390- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056466 ID=TCONS_00056466|Name=TCONS_00056466|organism=Clytia hemisphaerica|type=transcript|length=2955bp|location=Sequence derived from alignment at scaffold_276:28436..31390- (Clytia hemisphaerica) GTTCAATTGACAGATACTTAAGGTGAGCAGTTTTTAGTTAAAGTTGAAGC
ATAAAACACCTCCTTCTCATAGGATTTTTTCAGCCAGTAGGGATAAAAAT
AACTGACTGGAACTCGATGGGGACTACATAATTTTTATGGCTGGGGATTT
AAATTTCATTGTTTTTAAGTCAGAAAATTCAGTGGGGGTCGAAAAAATAG
CATAATTTTTTGCAGCGACGATTAGTGTGGTGTGATTAGATTATTTTCAG
TGGGGACAAATTTAAAAGTAAAATTTTCCACTGGGGACGATATTTTGGCC
AAAATTTCCAGTGAAAGGGGTCCCAGTAAGTCTGGGAGAAGAGGGTGTCA
AAAGCACTGTGTTTTATATGAACCCTTTGAAATCCTTTGATCGGAGCTTT
TTTAAATTGGTATACCCTAATGGTAGCACTACTCTATAGCGGTGTAAATG
CATCGATAGCTCTAGATCTAGTTTTATTAAACACTTATTCGCAATTGAAC
GTTTAAAAAAGTTTAATTGCTCCTCTTTAAAATTTAAGAATCACTTAAGA
ACATCTAAAGGCTCACTTCAATGCACCTTTTCGACCGTAGCCGCCAATTG
CCGCGCAGGCATTTTTTTTGTCCGTTTTACCACCCTAAAACCGTCCCAGT
CTTTTTTTCGCACCTAAAGACAATGGAAAAAAGTGTAAATAAAGGATTGG
GTCGAGTTTACGGTGGTAAAGTAAATTATAAAGTGGTACAACGCTCGAAA
AGGTGTATATATGTAATTTTTATGGATAAAAACTTTATTTTTAATTATTC
AAATTTATAATCATTGTAGGAGCCGACATGAAGTGGTTTATCATATTGAC
AAGTTTCATTTTGTGTGCACGTGCCATCGAAGATGACAGTTATATGGATT
ACATGAGTAGAAGATCACACTCCTGGCCGCTTCCCAATCGACGGGAGTTC
GGAAATCTCGGAAGATATTATTACGATGTTATTGAAAAAGATGATCCGTT
TCCATTGGAACAAGAGAGAGAGTTGGATGTTAAGGAAACCTCCGCAGAAA
GATTAGGAATGGATGGTGACGACGAAAATCGAGAAATATCGTTAGCAGAA
CTTGAGAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGTATCTCG
AAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTTTGGGGAACAAA
GACGCGTGCTGAACGACGAAAAGCGAGAATTATCGTTGGCAGAACTCGAG
AGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCT
CAACGGAAAACCTCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCG
AGCTGAACGACGAAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAA
GACAACGAAATCCATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGG
AAAACCGCTTAGAATCGCATCCATGTTTGGGGAGCGAAGACGCGAGCTGA
ACGACGAAAAACGAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAAC
GAAATCTATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACC
GCTTAGAATCCCATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACG
AAAAACGAGAATTATCGTTGGCAGAGCTTGAGAGAAAAGACAACGAAATC
CATGAGCAAGACCTTGCTGCATCTCGAAGTCTCAACGGAAAACCGCTTAG
AATCCCATCCATGTTTGGGGAACAAAGACGCGAGCTGAACGACGAAAAGC
GAGAATTATCGTTGGCAGAACTTGAGAGAAAAGACAACGAAATCCATGAG
CAAGACCTTGCTGCATCTCGAAGGCTTAACGGAAAACCTCTTAGAATCCC
ATCCATGTTTGGGGAGCGAAGACGCGAGCTGAACGACGAAAAGCGAGAAT
TATCGTTGGTAGAGCTTGAGAGAAAAGACAACGAAATCCATGAGCAAGAC
CTTGCTGTATCTCGAAGTCTCAACGGAAAACCTCTTAGAATCCCATCCAT
GCTTGGGGAACGAAGACGAGAGCTGAGCGACAACGAAAAGCGAGAATTAT
CGTTGGCAGAGCTTGAGAGAAAAGACAACAAAATTCATGAGCAAGACCTT
GCTGTATCTCGAAGTCTCAACGGAAAACCGCTTAGAATCCCATCCATGTT
TGGGGAGCGAAGACGCGAGCTGAACGACGAAAAACGAGAATTATCGTTGG
CAGAGCTTGAAAGAAAAGACAACGAAATCCATGAGCAAGACCTTGCTGCA
TCTCAAAAGCTAAACGGAAAACCGCTTAGAATCGAATCGATAAATGGACA
GCAAAGACTCGAGCTGAACGGCGACGAAAAGAAAGAATTATCGTTATTGG
CAGATCTGGAAAGTAATGAGAAAGAAACCGACCAACAAGATCTTGCTGCA
TATCGGAGAGTCGAAGGAAAACGGTTTGGAGAGCAAAGACGAGATTATCA
CCCAAGAGGAAGATACTTGAATGATGATGATGTTTTCAACGACTTGCCGT
CAAGAGAAGAAAAATACATCTAATGAGCAATTAACCAAGATAACCCAAAC
AATCCATTAACTTGTTTGAACTATTGCTAACGACATTCTAAATTGTGTAT
TTGATACACAAGATAACCCAAACAATCCATTAACTTGTTTGAACTATTGC
TAACGACATTCTAAATTGTGTATTTGATACATACTTAAACGAGCTTAAAA
TTTCGATATATAGGAATTTTATTGAGTTTATAAAGAAAAATAAATGGAAT
CAAATCATGAAAATATTCACGCCCCGTATTTCCTTTAAAACTAAGCTTCT
ACAATCATGGTCAAGATCTATTGAGAATTTAGCTTCCTTGTTTTTCGAAA
TTTGGAGTTCGGGCGAAAATTGCCTATTTTGGGCCATCTCTTAAATTTAA
TCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056466-exon-scaffold_276-1575043694:31369..31390 | TCONS_00056466-exon-scaffold_276-1575043694:31369..31390 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1575043694:29679..30571 | TCONS_00056466-exon-scaffold_276-1575043694:29679..30571 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1575043694:29518..29534 | TCONS_00056466-exon-scaffold_276-1575043694:29518..29534 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1575043694:28436..28932 | TCONS_00056466-exon-scaffold_276-1575043694:28436..28932 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1510915933:31369..31390 | TCONS_00056466-exon-scaffold_276-1510915933:31369..31390 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1510915933:29679..30571 | TCONS_00056466-exon-scaffold_276-1510915933:29679..30571 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1510915933:29518..29534 | TCONS_00056466-exon-scaffold_276-1510915933:29518..29534 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1510915933:28436..28932 | TCONS_00056466-exon-scaffold_276-1510915933:28436..28932 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1491911889:31369..31390 | TCONS_00056466-exon-scaffold_276-1491911889:31369..31390 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1491911889:29679..30571 | TCONS_00056466-exon-scaffold_276-1491911889:29679..30571 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1491911889:29518..29534 | TCONS_00056466-exon-scaffold_276-1491911889:29518..29534 | Clytia hemisphaerica | exon |
TCONS_00056466-exon-scaffold_276-1491911889:28436..28932 | TCONS_00056466-exon-scaffold_276-1491911889:28436..28932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_276 | supercontig | scaffold_276:28436..31390 - |
Blast
The following BLAST results are available for this feature:
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