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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056523 ID=TCONS_00056523|Name=TCONS_00056523|organism=Clytia hemisphaerica|type=transcript|length=992bp
TAAAGGCTTCGAAAGTATTCCGGAGACAATGTGGTTTGCCGTCATCTCCA
TGACAACTGTCGGTTATGGTGATGTCGTTCCGAAAACTACACTGGGTAAA
TTATCCGGAGCTGTCGGTATCTTCATGGGAACTGTGGTACTCTTTCATCT
CTTCTTACCCATTTATCTGATGTACTTCTCATTATTTTACGgacaagaaa
aagagaaaaacaggtTAGAGCAAGAAGCGAAACATaaagccaaaatatta
aaaggATTTTCAGAAGCTACCATCTCTTCGCCTGAAACTTTCTATTTCCG
TAAAAAGAATTTGACACTTTCTCCAGCTGTCAGTAGTCGTATGAGTCGAT
TGAGTGTGGATTCAGATTCCAGCACGTCTGATATCGATCTGCATCCGGAG
GACGGAAACTATAGTTTAGCAGTGCCTGTTCGGAGGCTAGCAGGGACATC
ATCTAGTTATGTGCTTTAGCTTAAGCAAGGGGATtgatttaaagaaatat
ttttgtacacATGAAGTATAATTTCTAATTAAACTCCGGTTAAAGGAGTT
TCttgaaatcagtgtttttcatttgtaattgtgcgtaaatccGATTAATG
GTGATAGTCGggttcgatttcccgatctttcGGGTTCGATTCCCGATCTT
TCCGGTTTGATTTCCTGATTTGATTTACGTTTGCGCTCGCACTTACTAGG
ATatactctttttaaattttatgttatatatattaagaaaggctgaccAC
GATAAAGACGTTTGCGTAATGGTTCGCtattcaaaaatgacaattacgga
agtttgcagccgtcattacggctgttttatttaaatattcaaACGAGAAG
AATATATTTGTTAACTATGTAGatgaaaaatgctttcaaaTATAAGCCTA
ATGAGTCAGCATAGACTGCTGTTGTCACTGGGTTATTACATACGACTTTT
TTCCAGCATTACAAAGACAAGTGATTACTTACTTTTTATTGG Run BLAST on NCBI protein sequence of TCONS_00056523-protein >TCONS_00056523-protein ID=TCONS_00056523-protein|Name=TCONS_00056523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
KGFESIPETMWFAVISMTTVGYGDVVPKTTLGKLSGAVGIFMGTVVLFHL
FLPIYLMYFSLFYGQEKEKNRLEQEAKHKAKILKGFSEATISSPETFYFR
KKNLTLSPAVSSRMSRLSVDSDSSTSDIDLHPEDGNYSLAVPVRRLAGTS
SSYVL Run BLAST on NCBI transcript from alignment at scaffold_276:32382..33373 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056523 ID=TCONS_00056523|Name=TCONS_00056523|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at scaffold_276:32382..33373 (Clytia hemisphaerica)
CCAATAAAAAGTAAGTAATCACTTGTCTTTGTAATGCTGGAAAAAAGTCG
TATGTAATAACCCAGTGACAACAGCAGTCTATGCTGACTCATTAGGCTTA
TAtttgaaagcatttttcatCTACATAGTTAACAAATATATTCTTCTCGT
ttgaatatttaaataaaacagccgtaatgacggctgcaaacttccgtaat
tgtcatttttgaataGCGAACCATTACGCAAACGTCTTTATCGTggtcag
cctttcttaatatatataacataaaatttaaaaagagtatATCCTAGTAA
GTGCGAGCGCAAACGTAAATCAAATCAGGAAATCAAACCGGAAAGATCGG
GAATCGAACCCgaaagatcgggaaatcgaaccCGACTATCACCATTAATC
ggatttacgcacaattacaaatgaaaaacactgatttcaaGAAACTCCTT
TAACCGGAGTTTAATTAGAAATTATACTTCATgtgtacaaaaatatttct
ttaaatcaATCCCCTTGCTTAAGCTAAAGCACATAACTAGATGATGTCCC
TGCTAGCCTCCGAACAGGCACTGCTAAACTATAGTTTCCGTCCTCCGGAT
GCAGATCGATATCAGACGTGCTGGAATCTGAATCCACACTCAATCGACTC
ATACGACTACTGACAGCTGGAGAAAGTGTCAAATTCTTTTTACGGAAATA
GAAAGTTTCAGGCGAAGAGATGGTAGCTTCTGAAAATccttttaatattt
tggctttATGTTTCGCTTCTTGCTCTAacctgtttttctctttttcttgt
cCGTAAAATAATGAGAAGTACATCAGATAAATGGGTAAGAAGAGATGAAA
GAGTACCACAGTTCCCATGAAGATACCGACAGCTCCGGATAATTTACCCA
GTGTAGTTTTCGGAACGACATCACCATAACCGACAGTTGTCATGGAGATG
ACGGCAAACCACATTGTCTCCGGAATACTTTCGAAGCCTTTA Coding sequence (CDS) from alignment at scaffold_276:32382..33373 >TCONS_00056523 ID=TCONS_00056523|Name=TCONS_00056523|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_276:32382..33373 (Clytia hemisphaerica)
CTAAAGCACATAACTAGATGATGTCCCTGCTAGCCTCCGAACAGGCACTG
CTAAACTATAGTTTCCGTCCTCCGGATGCAGATCGATATCAGACGTGCTG
GAATCTGAATCCACACTCAATCGACTCATACGACTACTGACAGCTGGAGA
AAGTGTCAAATTCTTTTTACGGAAATAGAAAGTTTCAGGCGAAGAGATGG
TAGCTTCTGAAAATccttttaatattttggctttATGTTTCGCTTCTTGC
TCTAacctgtttttctctttttcttgtcCGTAAAATAATGAGAAGTACAT
CAGATAAATGGGTAAGAAGAGATGAAAGAGTACCACAGTTCCCATGAAGA
TACCGACAGCTCCGGATAATTTACCCAGTGTAGTTTTCGGAACGACATCA
CCATAACCGACAGTTGTCATGGAGATGACGGCAAACCACATTGTCTCCGG
AATACTTTCGAAGCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056523-exon-scaffold_276-1491911889:32382..33373 | TCONS_00056523-exon-scaffold_276-1491911889:32382..33373 | Clytia hemisphaerica | exon |
| TCONS_00056523-exon-scaffold_276-1510915933:32382..33373 | TCONS_00056523-exon-scaffold_276-1510915933:32382..33373 | Clytia hemisphaerica | exon |
| TCONS_00056523-exon-scaffold_276-1575043694:32382..33373 | TCONS_00056523-exon-scaffold_276-1575043694:32382..33373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:32382..33373 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006813 |
potassium ion transport |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
The following BLAST results are available for this feature:
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