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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056527 ID=TCONS_00056527|Name=TCONS_00056527|organism=Clytia hemisphaerica|type=transcript|length=1660bp
AATGTTCAGTAAAAATAGAGAAACTCTAGAGTTGCAACTTTaagaattgt
ttttctttttggagCGAAGGAAATTGGTGAAGAACAATCCGAAGAAAATG
ATCAACTCGATGATAGAGAGGATGGAGGATCCAGTCATTAATCCAAGACA
TCCACCAAAATTTGCGAACAAATCTTGCCATGTATATTGTGGTTTCTCTG
CCACAATCTCTAGCAAAAAGGATTGGAAAGTGAAAGCCAACTCCAGGAAA
TGGTCTAACTTCATAGGATTGTGGAAAAGCGATAATTTGATATCTTCATC
GTAGCAGGGATCCAGCTCACAGAGGTTGTCGCATTTTTCCGTTAACGCAT
GGTCATTCTCCAATATGCTCAAGCAAGCTTGTCCAGTTTCATCATCAACA
AAGGTTTTATTGGCAAACTTTTCTGGGTGTCGCATAtgtttcttatacat
agcaggTATTTGGCCGCACTTTTCGAAGACTGCTTCCCAGAAACAACCTT
TTTGGCATTTCATGACTGAGTAATTGCCCTTGAATTTATTCAAACTGTAA
GGACCACTCCCATCAACACATTCGGTAAAGGGAAGACCAAGGCGTGTGAT
GATTTTCTTTTCGATGTTGACGTAGTAAAATCCCTCACTGGCCCAGTAAA
CAGCTTCCGATGACTCGAAAAAGGTTTCGTCAACTGAATTCACGTACAGT
TCAGTCCACTCGTTTGATGATAGACGGCGGTCAGCAGCGGCTTGGTATGA
GAGTACGTCCGAAGGCATCTCCAGTACTTCACCAGTGATTGTAAAACAAT
CTGTCGTTTCGTCAAACTTCACCAAGTGATTTTGAGGGGACGCACGCGCa
taattggctgaaatattttgaactcTGACAAAAGTTGTTCCATTGTAGCC
GCATGCAGTGAGATTTCTAGCGCAGTCAACAATACTGAAGTCAACTAATG
TTGGGCGTTTAACTGGGGGCGGCTCTCCACTGAAACGCCTTCTTTCATTG
GCGATAGCAGTATGGTCACAAATAGTGATAGCAGGAATTGGAACTTTCGA
TTGAGACACGATCTTAGTGCTGGTGCGGCTGTCATGTTCCAGGAACGCAC
TCCAGTGTTCTTTAGAAATAAGAACAGCAATAATAAATGAAGCGATAACC
AGAATTGTCCACAAAACTTTGGCTGCAGTGCCACCTGCAGCAATGCGAGA
CAATCCGTGTATTGTTAAACCTTCCGCAAAATCTTTGTGACTTTCAATGA
CACTATCTTCTTCTGTCGACGCCTTCTTTGCTTCGAGATCTGTCAAATAT
TCCATATTGATATCTCCTTTCTGTTGGTAACCATCACCAATGAAGCCTTG
ATTGGCTTGACCACCACCAGAAGGTGACCTGTTTTTGATCTCCTTAACTT
CATCCTCTAGGGAAGTTAGTTTTTCCTCTAGCCGAAGAGATTGTCTTTCT
ATTAGGCGTCTCAAGCTATGAATTTGATCTTCCAAGTTATCCCCTCTCAT
TATTAGGTGCTACCTTTTTGCCaggttgtaaaaaataaatcaaagtaTGA
CCATGTTCGTGTCTTAAATTTCGTTTGATGGAAAATCTCGATTAATGTGT
GGTTTTAATAAATGTCTGATGTTTTTTATGTATAATGAATCTAATTGAAT
TGACTTCACG Run BLAST on NCBI protein sequence of TCONS_00056527-protein >TCONS_00056527-protein ID=TCONS_00056527-protein|Name=TCONS_00056527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MRGDNLEDQIHSLRRLIERQSLRLEEKLTSLEDEVKEIKNRSPSGGGQAN
QGFIGDGYQQKGDINMEYLTDLEAKKASTEEDSVIESHKDFAEGLTIHGL
SRIAAGGTAAKVLWTILVIASFIIAVLISKEHWSAFLEHDSRTSTKIVSQ
SKVPIPAITICDHTAIANERRRFSGEPPPVKRPTLVDFSIVDCARNLTAC
GYNGTTFVRVQNISANYARASPQNHLVKFDETTDCFTITGEVLEMPSDVL
SYQAAADRRLSSNEWTELYVNSVDETFFESSEAVYWASEGFYYVNIEKKI
ITRLGLPFTECVDGSGPYSLNKFKGNYSVMKCQKGCFWEAVFEKCGQIPA
MYKKHMRHPEKFANKTFVDDETGQACLSILENDHALTEKCDNLCELDPCY
DEDIKLSLFHNPMKLDHFLELAFTFQSFLLEIVAEKPQYTWQDLFANFGG
CLGLMTGSSILSIIELIIFFGLFFTNFLRSKKKNNS Run BLAST on NCBI transcript from alignment at scaffold_276:72518..74177 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056527 ID=TCONS_00056527|Name=TCONS_00056527|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at scaffold_276:72518..74177 (Clytia hemisphaerica)
CGTGAAGTCAATTCAATTAGATTCATTATACATAAAAAACATCAGACATT
TATTAAAACCACACATTAATCGAGATTTTCCATCAAACGAAATTTAAGAC
ACGAACATGGTCAtactttgatttattttttacaacctGGCAAAAAGGTA
GCACCTAATAATGAGAGGGGATAACTTGGAAGATCAAATTCATAGCTTGA
GACGCCTAATAGAAAGACAATCTCTTCGGCTAGAGGAAAAACTAACTTCC
CTAGAGGATGAAGTTAAGGAGATCAAAAACAGGTCACCTTCTGGTGGTGG
TCAAGCCAATCAAGGCTTCATTGGTGATGGTTACCAACAGAAAGGAGATA
TCAATATGGAATATTTGACAGATCTCGAAGCAAAGAAGGCGTCGACAGAA
GAAGATAGTGTCATTGAAAGTCACAAAGATTTTGCGGAAGGTTTAACAAT
ACACGGATTGTCTCGCATTGCTGCAGGTGGCACTGCAGCCAAAGTTTTGT
GGACAATTCTGGTTATCGCTTCATTTATTATTGCTGTTCTTATTTCTAAA
GAACACTGGAGTGCGTTCCTGGAACATGACAGCCGCACCAGCACTAAGAT
CGTGTCTCAATCGAAAGTTCCAATTCCTGCTATCACTATTTGTGACCATA
CTGCTATCGCCAATGAAAGAAGGCGTTTCAGTGGAGAGCCGCCCCCAGTT
AAACGCCCAACATTAGTTGACTTCAGTATTGTTGACTGCGCTAGAAATCT
CACTGCATGCGGCTACAATGGAACAACTTTTGTCAgagttcaaaatattt
cagccaattatGCGCGTGCGTCCCCTCAAAATCACTTGGTGAAGTTTGAC
GAAACGACAGATTGTTTTACAATCACTGGTGAAGTACTGGAGATGCCTTC
GGACGTACTCTCATACCAAGCCGCTGCTGACCGCCGTCTATCATCAAACG
AGTGGACTGAACTGTACGTGAATTCAGTTGACGAAACCTTTTTCGAGTCA
TCGGAAGCTGTTTACTGGGCCAGTGAGGGATTTTACTACGTCAACATCGA
AAAGAAAATCATCACACGCCTTGGTCTTCCCTTTACCGAATGTGTTGATG
GGAGTGGTCCTTACAGTTTGAATAAATTCAAGGGCAATTACTCAGTCATG
AAATGCCAAAAAGGTTGTTTCTGGGAAGCAGTCTTCGAAAAGTGCGGCCA
AATAcctgctatgtataagaaacaTATGCGACACCCAGAAAAGTTTGCCA
ATAAAACCTTTGTTGATGATGAAACTGGACAAGCTTGCTTGAGCATATTG
GAGAATGACCATGCGTTAACGGAAAAATGCGACAACCTCTGTGAGCTGGA
TCCCTGCTACGATGAAGATATCAAATTATCGCTTTTCCACAATCCTATGA
AGTTAGACCATTTCCTGGAGTTGGCTTTCACTTTCCAATCCTTTTTGCTA
GAGATTGTGGCAGAGAAACCACAATATACATGGCAAGATTTGTTCGCAAA
TTTTGGTGGATGTCTTGGATTAATGACTGGATCCTCCATCCTCTCTATCA
TCGAGTTGATCATTTTCTTCGGATTGTTCTTCACCAATTTCCTTCGctcc
aaaaagaaaaacaattcttAAAGTTGCAACTCTAGAGTTTCTCTATTTTT
ACTGAACATT Coding sequence (CDS) from alignment at scaffold_276:72518..74177 >TCONS_00056527 ID=TCONS_00056527|Name=TCONS_00056527|organism=Clytia hemisphaerica|type=CDS|length=1461bp|location=Sequence derived from alignment at scaffold_276:72518..74177 (Clytia hemisphaerica)
ATGAGAGGGGATAACTTGGAAGATCAAATTCATAGCTTGAGACGCCTAAT
AGAAAGACAATCTCTTCGGCTAGAGGAAAAACTAACTTCCCTAGAGGATG
AAGTTAAGGAGATCAAAAACAGGTCACCTTCTGGTGGTGGTCAAGCCAAT
CAAGGCTTCATTGGTGATGGTTACCAACAGAAAGGAGATATCAATATGGA
ATATTTGACAGATCTCGAAGCAAAGAAGGCGTCGACAGAAGAAGATAGTG
TCATTGAAAGTCACAAAGATTTTGCGGAAGGTTTAACAATACACGGATTG
TCTCGCATTGCTGCAGGTGGCACTGCAGCCAAAGTTTTGTGGACAATTCT
GGTTATCGCTTCATTTATTATTGCTGTTCTTATTTCTAAAGAACACTGGA
GTGCGTTCCTGGAACATGACAGCCGCACCAGCACTAAGATCGTGTCTCAA
TCGAAAGTTCCAATTCCTGCTATCACTATTTGTGACCATACTGCTATCGC
CAATGAAAGAAGGCGTTTCAGTGGAGAGCCGCCCCCAGTTAAACGCCCAA
CATTAGTTGACTTCAGTATTGTTGACTGCGCTAGAAATCTCACTGCATGC
GGCTACAATGGAACAACTTTTGTCAgagttcaaaatatttcagccaatta
tGCGCGTGCGTCCCCTCAAAATCACTTGGTGAAGTTTGACGAAACGACAG
ATTGTTTTACAATCACTGGTGAAGTACTGGAGATGCCTTCGGACGTACTC
TCATACCAAGCCGCTGCTGACCGCCGTCTATCATCAAACGAGTGGACTGA
ACTGTACGTGAATTCAGTTGACGAAACCTTTTTCGAGTCATCGGAAGCTG
TTTACTGGGCCAGTGAGGGATTTTACTACGTCAACATCGAAAAGAAAATC
ATCACACGCCTTGGTCTTCCCTTTACCGAATGTGTTGATGGGAGTGGTCC
TTACAGTTTGAATAAATTCAAGGGCAATTACTCAGTCATGAAATGCCAAA
AAGGTTGTTTCTGGGAAGCAGTCTTCGAAAAGTGCGGCCAAATAcctgct
atgtataagaaacaTATGCGACACCCAGAAAAGTTTGCCAATAAAACCTT
TGTTGATGATGAAACTGGACAAGCTTGCTTGAGCATATTGGAGAATGACC
ATGCGTTAACGGAAAAATGCGACAACCTCTGTGAGCTGGATCCCTGCTAC
GATGAAGATATCAAATTATCGCTTTTCCACAATCCTATGAAGTTAGACCA
TTTCCTGGAGTTGGCTTTCACTTTCCAATCCTTTTTGCTAGAGATTGTGG
CAGAGAAACCACAATATACATGGCAAGATTTGTTCGCAAATTTTGGTGGA
TGTCTTGGATTAATGACTGGATCCTCCATCCTCTCTATCATCGAGTTGAT
CATTTTCTTCGGATTGTTCTTCACCAATTTCCTTCGctccaaaaagaaaa
acaattcttAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056527-exon-scaffold_276-1491911889:72518..74177 | TCONS_00056527-exon-scaffold_276-1491911889:72518..74177 | Clytia hemisphaerica | exon |
| TCONS_00056527-exon-scaffold_276-1510915933:72518..74177 | TCONS_00056527-exon-scaffold_276-1510915933:72518..74177 | Clytia hemisphaerica | exon |
| TCONS_00056527-exon-scaffold_276-1575043694:72518..74177 | TCONS_00056527-exon-scaffold_276-1575043694:72518..74177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:72518..74177 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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