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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056469 ID=TCONS_00056469|Name=TCONS_00056469|organism=Clytia hemisphaerica|type=transcript|length=2049bp
CAAAAGCTTTCAATTGTTCATCAAGGGTTTGATCAGCACTCTCCTCCTTG
ATTGTTTGATCAAAAGTCTCGTCAACTATTCCAGAATCAAAAGCAGTGTT
ATTCACACCTTTCATCTCCTTTGGAATACCTCCATCATCAGCGATAGCAG
AAACTTCCAAAACGTTTTGCTTATAAACCGTTGATTCCAAGTCCTCCTTG
AAAGCCATAATCACAGAATCTGGTCTTTCATTTTCCTCGTGTTCTTTGGT
AGCCATTTCGGGCAAGCTTTCTTCGACTTCAGCCTTGAAGGCTTTCAACT
CAGCATCTTCTTGAGACTTgcgtttttcttcttcttcacttttgAAAGCA
AGGAGTTGAGCAATCGTTGCAGTCTCTTCACTACGACCAACGTCGCCTTT
AACACTGTTGTCAGACAAACTATCTTTCCGTTGTCGTGAAATGCTGAGCG
ATCGCTCCTTGTGATCAGCGCTCATTGGGGTTGACTGGGCAACAGGTAAG
GAAACACTTTGAGTTTGCGGAGGAGTTTTTGGCCCCTCATCAAAAGCCTG
TGgagcttcttcttctttttcgtcAAGAGCTTCGATCTTTTCGTCGAGAG
CTTCTGTTTTTTCGTCAGGAGCTTCGGTTTTTTCTTTGTTCTCTACTGAA
GGGGCATGTTCAATAACAGGAGCATCTTCCGTGTAGGTTTTATCAATAGC
TTCGACAGGGGAATCTTCCTTAGTTGAAGTTGCTTCAATGGAACCGCTTT
CTTTTTCAGTCTGCACAAGCTTTTCAACCTCTTTTATTGGAAGCGTCTCC
GAGTTTTCAACCACCTTCTGTAAAACCTCTACCGCAACAGACTCACTCTT
GTCAGGAAGACTTTCAGTAGTCTCGTCAATGACTTCTAGACCTCTAACAT
CTTCCTGGGCATCACCGGCATCCAAAACTTCTGGAGAAATATTGACATCA
TTGGGGGACTCTGTTGATTCTACAGATTCAGAAATATTCTCATCAGGACT
TTGAACGTCAGACGACACAACGTGTTGACGTGGAAATTGCACCACTTTAG
CTTCACGATTCACCAAGCCAGCTTTCTCAAGCTCACCAATATCCTCAGCA
GTTTCAATCTCTAGAATGTCAGGCTGAGAGGATTCAAGGGCCACCTTTTG
AGGTTCTGGTTCTGTCTCCTCCATGACCATAACAGTGTGTTTGGCATCAT
CAATAGCTTTAGCGATGTTGTCAAAAGCTTGACTTATCGCTTCTTCTCTC
TTCTCACGAGGTGACTTTGGCGGTTGTTTTGAGGACTTTGCAACTTCTTC
CTGCTCTTGTGGAACTTCTACTGGCTCTTGTGGAACTTCTTCAAGAACCA
TCACATTGTTGTCTTGAATAGGCTCTTTAGCTTCTTGGGTAACTTGAGGT
TCTGAGTCTTCAACCTCTAAGGTAGTCGAGACTTCTTCGGCGGCTTGTGT
TTGCACCTTCTCGACCTCTTCAATTGAGGCTGTTTCAACTTGCTTTTCAT
TTGGCTCTTGTTCTATAGGATCGGTACCAATGCTGATAGTAGGACCGAAT
AAAACAACTGTCTGGTCAATAGGAGCAGAGCCTTCTTTGGATTCTTCTTC
TGTCTGTTGCTTTGCTTTTAATTCTTGATATACAGGGTCGGCTTCAGTGA
GGACTTCTTCAGCTTCATCGACAGCTTCATCGACAGCTTCATCAACAGCA
TCCTTGAAACCTTCATCTACACCTTTTTCACTGCTAACAGGAGTTTGTTG
CTGCTTTTCTTCAATGATGAAAGTGTTTTGTTTAGATTCAAAACCACTAT
CACTCGACTTTTCAGGACCCGGTGATTTTCTCAGGTCGACCATCTCATCA
AGTTCGGTAGCATGAGATTCTTTTTGGATTAGTACAGGATCTCCGCTCTC
GTCTCcaatattttcttcattttcgatgCTCAGAGGGTCTTTGTCAACGT
TGGATTTAGTCTGCTCTTCGTCAAGCTTGACTTCAGAGTCAACATGTTCA
GCTTCTAGTTCTTCTTTATCATTCAAGTCAGTTTCTTGTGTTGGTTTAG Run BLAST on NCBI transcript from alignment at scaffold_276:122108..124208- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056469 ID=TCONS_00056469|Name=TCONS_00056469|organism=Clytia hemisphaerica|type=transcript|length=2101bp|location=Sequence derived from alignment at scaffold_276:122108..124208- (Clytia hemisphaerica)
CAAAAGCTTTCAATTGTTCATCAAGGGTTTGATCAGCACTCTCCTCCTTG
ATTGTTTGATCAAAAGTCTCGTCAACTATTCCAGAATCAAAAGCAGTGTT
ATTCACACCTTTCATCTCCTTTGGAATACCTCCATCATCAGCGATAGCAG
AAACTTCCAAAACGTTTTGCTTATAAACCGTTGATTCCAAGTCCTCCTTG
AAAGCCATAATCACAGAATCTGGTCTTTCATTTTCCTCGTGTTCTTTGGT
AGCCATTTCGGGCAAGCTTTCTTCGACTTCAGCCTTGAAGGCTTTCAACT
CAGCATCTTCTTGAGACTTGCGTTTTTCTTCTTCTTCACTTTTGAAAGCA
AGGAGTTGAGCAATCGTTGCAGTCTCTTCACTACGACCAACGTCGCCTTT
AACACTGTTGTCAGACAAACTATCTTTCCGTTGTCGTGAAATGCTGAGCG
ATCGCTCCTTGTGATCAGCGCTCATTGGGGTTGACTGGGCAACAGGTAAG
GAAACACTTTGAGTTTGCGGAGGAGTTTTTGGCCCCTCATCAAAAGCCTG
TGGAGCTTCTTCTTCTTTTTCGTCAAGAGCTTCGATCTTTTCGTCGAGAG
CTTCTGTTTTTTCGTCAGGAGCTTCGGTTTTTTCTTTGTTCTCTACTGAA
GGGGCATGTTCAATAACAGGAGCATCTTCCGTGTAGGTTTTATCAATAGC
TTCGACAGGGGAATCTTCCTTAGTTGAAGTTGCTTCAATGGAACCGCTTT
CTTTTTCAGTCTGCACAAGCTTTTCAACCTCTTTTATTGGAAGCGTCTCC
GAGTTTTCAACCACCTTCTGTAAAACCTCTACCGCAACAGACTCACTCTT
GTCAGGAAGACTTTCAGTAGTCTCGTCAATGACTTCTAGACCTCTAACAT
CTTCCTGGGCATCACCGGCATCCAAAACTTCTGGAGAAATATTGACATCA
TTGGGGGACTCTGTTGATTCTACAGATTCAGAAATATTCTCATCAGGACT
TTGAACGTCAGACGACACAACGTGTTGACGTGGAAATTGCACCACTTTAG
CTTCACGATTCACCAAGCCAGCTTTCTCAAGCTCACCAATATCCTCAGCA
GTTTCAATCTCTAGAATGTCAGGCTGAGAGGATTCAAGGGCCACCTTTTG
AGGTTCTGGTTCTGTCTCCTCCATGACCATAACAGTGTGTTTGGCATCAT
CAATAGCTTTAGCGATGTTGTCAAAAGCTTGACTTATCGCTTCTTCTCTC
TTCTCACGAGGTGACTTTGGCGGTTGTTTTGAGGACTTTGCAACTTCTTC
CTGCTCTTGTGGAACTTCTACTGGCTCTTGTGGAACTTCTTCAAGAACCA
TCACATTGTTGTCTTGAATAGGCTCTTTAGCTTCTTGGGTAACTTGAGGT
TCTGAGTCTTCNTTCTTGAATAGGCTCATTAGCTTCTTGGGTAACTTGAG
GTTCTGAGTCTTCAACCTCTAAGGTAGTCGAGACTTCTTCGGCGGCTTGT
GTTTGCACCTTCTCGACCTCTTCAATTGAGGCTGTTTCAACTTGCTTTTC
ATTTGGCTCTTGTTCTATAGGATCGGTACCAATGCTGATAGTAGGACCGA
ATAAAACAACTGTCTGGTCAATAGGAGCAGAGCCTTCTTTGGATTCTTCT
TCTGTCTGTTGCTTTGCTTTTAATTCTTGATATACAGGGTCGGCTTCAGT
GAGGACTTCTTCAGCTTCATCGACAGCTTCATCGACAGCTTCATCAACAG
CATCCTTGAAACCTTCATCTACACCTTTTTCACTGCTAACAGGAGTTTGT
TGCTGCTTTTCTTCAATGATGAAAGTGTTTTGTTTAGATTCAAAACCACT
ATCACTCGACTTTTCAGGACCCGGTGATTTTCTCAGGTCGACCATCTCAT
CAAGTTCGGTAGCATGAGATTCTTTTTGGATTAGTACAGGATCTCCGCTC
TCGTCTCCAATATTTTCTTCATTTTCGATGCTCAGAGGGTCTTTGTCAAC
GTTGGATTTAGTCTGCTCTTCGTCAAGCTTGACTTCAGAGTCAACATGTT
CAGCTTCTAGTTCTTCTTTATCATTCAAGTCAGTTTCTTGTGTTGGTTTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056469-exon-scaffold_276-1575043694:122811..124208 | TCONS_00056469-exon-scaffold_276-1575043694:122811..124208 | Clytia hemisphaerica | exon |
| TCONS_00056469-exon-scaffold_276-1575043694:122108..122758 | TCONS_00056469-exon-scaffold_276-1575043694:122108..122758 | Clytia hemisphaerica | exon |
| TCONS_00056469-exon-scaffold_276-1510915933:122811..124208 | TCONS_00056469-exon-scaffold_276-1510915933:122811..124208 | Clytia hemisphaerica | exon |
| TCONS_00056469-exon-scaffold_276-1510915933:122108..122758 | TCONS_00056469-exon-scaffold_276-1510915933:122108..122758 | Clytia hemisphaerica | exon |
| TCONS_00056469-exon-scaffold_276-1491911889:122811..124208 | TCONS_00056469-exon-scaffold_276-1491911889:122811..124208 | Clytia hemisphaerica | exon |
| TCONS_00056469-exon-scaffold_276-1491911889:122108..122758 | TCONS_00056469-exon-scaffold_276-1491911889:122108..122758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:122108..124208 - |
Blast
The following BLAST results are available for this feature:
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