TCONS_00056470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056470
Unique NameTCONS_00056470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056470 ID=TCONS_00056470|Name=TCONS_00056470|organism=Clytia hemisphaerica|type=transcript|length=983bp
GCTTGCTTTCTTCAGAAGTTTCCTCTTCGACTTTAGCGACAAGTTCTTCG
ACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTC
TTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCCGTTG
GCTTACTTTCTTCAGAAGTTTCCTCTTCGACTTTAAAGACAAGTTCTTCG
ACTGTTTGGGAAACTTCTTTTGTTGGTTTGCTTTCTTCAAAAGTTTCCTC
TTCGACTTTAGAGACAAGTTCTTCGACTGTTTGAGAAACTTCTTCTGTTG
GTTTGATTTCTTCTGAAGTTTCCTCTTCGATTTTGGACACAAGTTCTTCC
ACTGTTTCTGAAACTTCTTCAGTTGGCTTGCTTTCTTCTGAAGTTTCCTC
TTCGACTTTGGACATAAGTTCTTCGACTGTTTGTGAAATTTCTTCTGTTG
GCTTGCTTTCTTCTGAAGTTTCCTGTTCAACTTTAGAGACAAATTCTTCG
ACTGTTTGTGAAACTTCTTCTGTTGGCTCACTTTCATCAGATGTTCCCTC
TTCGACTTTGGACACAACTTCTTCGACTGTTTGTGAAACTTCTTCACTTG
TTTGAGGAACATCCTCAATTTGTTTGCTTTCTTCAGAAATTCCAGCTTTC
ATTCTGGAATCAAGTTCTTCAACTTTTTGAGGGACATTAACCTTAGCATC
GGTTTCTTCAACATGGATACCATTATTTGAAGGCGTATTTTCTCCTTGGT
TTTCTTGCTCTAACGAGTCCTCCACCTTTGAAAAGAGGTCTTCCAAAACT
TCGTTCACTGTGGAATCTAGAGAAGCCCTTTCTATCTCAGCTTCTTCTGc
agcaaatttttgcttttctgcttcttgctcagcaagtctttgcttttctg
cttcttcttcGGCGAGTCTCTGCCTTTCTGCTTCTTCAGCAGCAAttctt
tgcttttctgcttcttctttAGCGAGTCTTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_276:154084..155504-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056470 ID=TCONS_00056470|Name=TCONS_00056470|organism=Clytia hemisphaerica|type=transcript|length=1421bp|location=Sequence derived from alignment at scaffold_276:154084..155504- (Clytia hemisphaerica)
GCTTGCTTTCTTCAGAAGTTTCCTCTTCGACTTTAGCGACAAGTTCTTCG
ACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTC
TTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCCGTTG
GCTTACTTTCTTCAGAAGTTTCCTCTTCGACTTTAAAGACAAGTTCTTCG
ACTGTTTGGGAAACTTCTTTTGTTGGTTTGCTTTCTTCAAAAGTTTCCTC
TTCGACTTTAGAGACAAGTTCTTCGACTGTTTGAGAAACTTCTTCTGTTG
GTTTGATTTCTTCTGAAGTTTCCTCTTCGATTTTGGACACAAGTTCTTCC
ACTGTTTCTGAAACTTCTTCAGTTGGCTTGCTTTCTTCTGAAGTTTCCTC
TTCGACTTTGGACATAAGTTCTTCGACTGTTTGTGAAATTTCTTCTGTTG
GCTTGCTTTCTTCTGAAGTTTCCTGTTCAACATTAGAGACAAGTTCTTCG
ACTGTTTGTGAAACTTCTTCCGTTGACTTGCTTTCTTCTGAAGTTTCCTC
TTCAACATTAGACACAAGTTCATCGACTGTTTGTGAAACTTCTTCATCTG
TTTGAAAAACTTTTTCTCTTGGTTTGCTTTCTTCAGAAGTTTCTAAGTCG
ACTTTGGACACGAGTTCTTCGACTGTTTCTGAAACTTTTTCAACTGTTTG
TGAAATTTCTTCTGTTGGCTTGCTTTCTTCTAAAGTTTCCTCTTCAACTT
TAAAGAGAAGTTCTTCAACTGTTTGTGAAACCACTTCATCTGCTTGAGGA
ACATCCTCATTTGGTTTGCTTTCTTCAGAAGTTTCTTCTTCGACTTTGGA
CACAAGTTCTTCGACTGCTTCTGAAACCTCTTCAGTTGGTTTGCTTTCCT
CAGATATTTCTTCTTCGACTTTAGAGACAAATTCTTCGACTGTTTGTGAA
ACTTCTTCTGTTGGCTCACTTTCATCAGATGTTCCCTCTTCGACTTTGGA
CACAACTTCTTCGACTGTTTGTGAAACTTCTTCACTTGTTTGAGGAACAT
CCTCAATTTGTTTGCTTTCTTCAGAAATTCCAGCTTTCATTCTGGAATCA
AGTTCTTCAACTTTTTGAGGGACATTAACCTTAGCATCGGTTTCTTCAAC
ATGGATACCATTATTTGAAGGCGTATTTTCTCCTTGGTTTTCTTGCTCTA
ACGAGTCCTCCACCTTTGAAAAGAGGTCTTCCAAAACTTCGTTCACTGTG
GAATCTAGAGAAGCCCTTTCTATCTCAGCTTCTTCTGCAGCAAATTTTTG
CTTTTCTGCTTCTTGCTCAGCAAGTCTTTGCTTTTCTGCTTCTTCTTCGG
CGAGTCTCTGCCTTTCTGCTTCTTCAGCAGCAATTCTTTGCTTTTCTGCT
TCTTCTTTAGCGAGTCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035582XLOC_035582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056470-exon-scaffold_276-1575043694:155024..155504TCONS_00056470-exon-scaffold_276-1575043694:155024..155504Clytia hemisphaericaexon
TCONS_00056470-exon-scaffold_276-1575043694:154084..154585TCONS_00056470-exon-scaffold_276-1575043694:154084..154585Clytia hemisphaericaexon
TCONS_00056470-exon-scaffold_276-1510915933:155024..155504TCONS_00056470-exon-scaffold_276-1510915933:155024..155504Clytia hemisphaericaexon
TCONS_00056470-exon-scaffold_276-1510915933:154084..154585TCONS_00056470-exon-scaffold_276-1510915933:154084..154585Clytia hemisphaericaexon
TCONS_00056470-exon-scaffold_276-1491911889:155024..155504TCONS_00056470-exon-scaffold_276-1491911889:155024..155504Clytia hemisphaericaexon
TCONS_00056470-exon-scaffold_276-1491911889:154084..154585TCONS_00056470-exon-scaffold_276-1491911889:154084..154585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:154084..155504 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.385678	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.254385	0	0	0	0.232692	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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