TCONS_00056473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056473
Unique NameTCONS_00056473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056473 ID=TCONS_00056473|Name=TCONS_00056473|organism=Clytia hemisphaerica|type=transcript|length=566bp
ATTCTTCGACTGTTTGTGAAACCTCTTCAGTTGGTTTGCTTTCCTCAGAT
ATTTCTTCTTCGACTTTAGAGACAAATTCTTCGACTGTTTGTGAAACTTC
TTCTGTTGGCTCACTTTCATCAGATGTTCCCTCTTCGACTTTGGACACAA
CTTCTTCGACTGTTTGTGAAACTTCTTCACTTGTTTGAGGAACATCCTCA
ATTTGTTTGCTTTCTTCAGAAATTCCAGCTTTCATTCTGGAATCAAGTTC
TTCAACTTTTTGAGGGACATTAACCTTAGCATCGGTTTCTTCAACATGGA
TACCATTATTTGAAGGCGTATTTTCTCCTTGGTTTTCTTGCTCTAACGAG
TCCTCCACCTTTGAAAAGAGGTCTTCCAAAACTTCGTTCACTGTGGAATC
TAGAGAAGCCCTTTCTATCTCAGCTTCTTCTGcagcaaatttttgctttt
ctgcttcttgctcagcaagtctttgcttttctgcttcttcttcGGCGAGT
CTCTGCCTTTCTGCTTCTTCAGCAGCAAttctttgcttttctgcttcttc
tttAGCGAGTCTTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_276:154084..156062-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056473 ID=TCONS_00056473|Name=TCONS_00056473|organism=Clytia hemisphaerica|type=transcript|length=1979bp|location=Sequence derived from alignment at scaffold_276:154084..156062- (Clytia hemisphaerica)
ATTCTTCGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAA
GTTTCCTCTTCGACTTTAGCGACAAGTTCTTCGACTGTTTGTGAAACATC
TTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGAGACAA
GTTCTTCGACTGTTTGTGAAACATCTTCTGCTGGCTTGCTTTCTTCTGAA
GTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACATC
TTCTGCTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGAGACAA
GTTCTTCGACTGTTTGTGAAACATCTTCTGCTGGCTTGCTTTCTTCTGAA
GTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACATC
TTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGATTTTAGAGACAG
GTTCTTCGACTGTTTGTGAAACTTCTTCTGTCGGCTTACTTTCTTCTGAA
GTTTCCTCTTCGACTTTAGCGACAAGTTCTTCGACTGTTTGTGAAACATC
TTCTGTTGGCTTGCTTTCTTCAGAAGTTTCCTCTTCGACTTTAGCGACAA
GTTCTTCGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAA
GTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACTTC
TTCCGTTGGCTTACTTTCTTCAGAAGTTTCCTCTTCGACTTTAAAGACAA
GTTCTTCGACTGTTTGGGAAACTTCTTTTGTTGGTTTGCTTTCTTCAAAA
GTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGAGAAACTTC
TTCTGTTGGTTTGATTTCTTCTGAAGTTTCCTCTTCGATTTTGGACACAA
GTTCTTCCACTGTTTCTGAAACTTCTTCAGTTGGCTTGCTTTCTTCTGAA
GTTTCCTCTTCGACTTTGGACATAAGTTCTTCGACTGTTTGTGAAATTTC
TTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTGTTCAACATTAGAGACAA
GTTCTTCGACTGTTTGTGAAACTTCTTCCGTTGACTTGCTTTCTTCTGAA
GTTTCCTCTTCAACATTAGACACAAGTTCATCGACTGTTTGTGAAACTTC
TTCATCTGTTTGAAAAACTTTTTCTCTTGGTTTGCTTTCTTCAGAAGTTT
CTAAGTCGACTTTGGACACGAGTTCTTCGACTGTTTCTGAAACTTTTTCA
ACTGTTTGTGAAATTTCTTCTGTTGGCTTGCTTTCTTCTAAAGTTTCCTC
TTCAACTTTAAAGAGAAGTTCTTCAACTGTTTGTGAAACCACTTCATCTG
CTTGAGGAACATCCTCATTTGGTTTGCTTTCTTCAGAAGTTTCTTCTTCG
ACTTTGGACACAAGTTCTTCGACTGCTTCTGAAACCTCTTCAGTTGGTTT
GCTTTCCTCAGATATTTCTTCTTCGACTTTAGAGACAAATTCTTCGACTG
TTTGTGAAACTTCTTCTGTTGGCTCACTTTCATCAGATGTTCCCTCTTCG
ACTTTGGACACAACTTCTTCGACTGTTTGTGAAACTTCTTCACTTGTTTG
AGGAACATCCTCAATTTGTTTGCTTTCTTCAGAAATTCCAGCTTTCATTC
TGGAATCAAGTTCTTCAACTTTTTGAGGGACATTAACCTTAGCATCGGTT
TCTTCAACATGGATACCATTATTTGAAGGCGTATTTTCTCCTTGGTTTTC
TTGCTCTAACGAGTCCTCCACCTTTGAAAAGAGGTCTTCCAAAACTTCGT
TCACTGTGGAATCTAGAGAAGCCCTTTCTATCTCAGCTTCTTCTGCAGCA
AATTTTTGCTTTTCTGCTTCTTGCTCAGCAAGTCTTTGCTTTTCTGCTTC
TTCTTCGGCGAGTCTCTGCCTTTCTGCTTCTTCAGCAGCAATTCTTTGCT
TTTCTGCTTCTTCTTTAGCGAGTCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035582XLOC_035582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056473-exon-scaffold_276-1575043694:156041..156062TCONS_00056473-exon-scaffold_276-1575043694:156041..156062Clytia hemisphaericaexon
TCONS_00056473-exon-scaffold_276-1575043694:154084..154627TCONS_00056473-exon-scaffold_276-1575043694:154084..154627Clytia hemisphaericaexon
TCONS_00056473-exon-scaffold_276-1510915933:156041..156062TCONS_00056473-exon-scaffold_276-1510915933:156041..156062Clytia hemisphaericaexon
TCONS_00056473-exon-scaffold_276-1510915933:154084..154627TCONS_00056473-exon-scaffold_276-1510915933:154084..154627Clytia hemisphaericaexon
TCONS_00056473-exon-scaffold_276-1491911889:156041..156062TCONS_00056473-exon-scaffold_276-1491911889:156041..156062Clytia hemisphaericaexon
TCONS_00056473-exon-scaffold_276-1491911889:154084..154627TCONS_00056473-exon-scaffold_276-1491911889:154084..154627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:154084..156062 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.110083	0.613572	0.581802	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.302109	0	0	0	0	0	0	0	0.141608	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top