TCONS_00056477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056477
Unique NameTCONS_00056477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056477 ID=TCONS_00056477|Name=TCONS_00056477|organism=Clytia hemisphaerica|type=transcript|length=3211bp
AACCTGAGATATTTCTTCCAGCAGACAAATTTGCCAAACCTTCATCATCA
GACCGTGGCGAGGTGACCGTAAGCTCTTCAACATCAATCTTACTAACTTT
CAATTTCTTCATTTGTTTGAAAGTATTTGCTTCCTCTTCAGTAGCTTTGT
GTATCTTTGCAATCGTTGGGATGTCTGGCAACACCTTGCGACCAGTTCCC
GATGAAGTGAGTTTAACAACGGGTGTGGAAGTTACTGGATCTGCCGATGG
TGGTGTTTGAGTGTCATCAGCATCATTAGCAACTTCATCAATAGCATTCT
CCAGAGCCTCATCAGCAATGTTGTGGGTGATTTTATCAGCAGCAGATTTA
GCTAGGAAGTCAGTTTTCAATTTCTCAATCTCCTTTTGATGCTCCTggtc
tttttctttctctttgacTTGGTGTTCTTTCAAAACATCCGTTCGGTATC
GCATCTCCTCCAGTTCTTGTTGATGTCTCTTCTCCTCTTCTTTCTGCTTC
TCCTGCAACCGAGAGAGGCGTGCGCGTTCAGCTTCCAGTTCTAATTTCAA
GCGCTCGTTTTTCAACTCTTCTTGTTGTAGCATCAAGGTCTCGCGTTCTT
TACGAATACGTGTCTCCTCAAGCATATAGGTAGACTGACGTTCCTTTTCT
TTCTCCAATAATTGTAGCTCaagatctttcaaatcacgTTTCGCCACGAC
TGCAATTGGCTCTTCCTTGGGTGTTGGAGTCATCTCACGGTTCGAAGCGA
TGACTTCAACTTGACAATTATCCAACGTGTTATTCAATACCATCTCTTCT
TCAAGCTCGCTTGTCATGGTGTCAGTCAAATGTGTAGGAATAGTTTCTTT
TGTCAAAGAGTCGTCTTTATGGTCAGATGCACCGTCATCAAGAGGTGGAG
TTATTCTAACCCCGACATGATCATCTTCCACATCAGCGTCAGCGACATCA
TCATCGTGACATTCGGTTTCACCAGTATCAACCACCTCAGAAGTCTCATT
TTGCACAGCGTCTTTACTTTCCTCAGAAACTGAAGCATCGGCTTGTGGGA
TATCTTTCATTTCTTCAGATTCAACAACGCGTTTCTCAGTAACCTCAGAT
TTGCTGTCATCAGCAACAACAACTGTTTGTATTTcaccttctttttcttc
tttcttttcagtAACAATGTAAACTTTACCATCAACGACTTTCTCCCCTT
CTACGCTCTCTTCATCATTCTTTGTTTCTGATTCAGCATCCAATTTTGCA
ACGAGATCCTCCATCTCACCAAAGACTTCTTTCTCAGAAACATCAACAGT
ATTTGAAACCAACTCGTCAGCTTTCACCAGCAAATCATTTTCATGCGCAA
CCAATTGTTCCATCTCAGTAAACACTTCCTTCTCAGAAGCATCGATAGCT
TCCTGTGTAACCTCAACTGAAGCTTCAACAAGATCTTCCTCAAAGACCTC
GGCAACCGCATCCACGCTTGACTTATTAGCAAGATGTTCTGCATTGGAAT
CAACAGATCGTTTCATAACGTATGCTTCAGGGTCGGTTTGATAAGAGACA
AACTCGTCAAAGATTTCTTTTTCGGCAGTATTTGATGCGTTCTCACTGAC
GTCGACGGCACTGGCTTGAATTTCTTCCTCGTATACTTCACTAACAGACT
CTTTGCAGGCAATTTGTGCTAATCTTCTAGATGCGATCTCGATTTGAACA
GGTTGAAGGCTCACATACTCATTGAAGATTTCCTTTTCAGCTTCATTGAT
TGTTTCAGTAGTAAGAACTGAACTTGCATTTATTGTCTCCTCTTCTACTA
CTTCCTTCAAAGACATTTCAACGACATTTTCTGTAAGTTCATTGGCTTTA
GCATTTCGTTCTGCTTCCTCAACAGCAAGTCTCTGTTTCTCTGCTTCTTC
TGcagcaagtctttgcttttctgcttcttcaGCAGCAAGTttttgctttt
ctgcttcttctgCAGCAAGCCTTTGCTTTTCTGCTTTCTCTGcagcaagt
ctttgcttttctgcttcttcttcagcaagtctttgcttttcgGCTTCTTC
AGCAGCAActctttgcttttctgcttcttcttcagcaagtctttgctttt
ctgcttcttcaGCAGCAActctttgcttttctgcttcttcttcagcaagc
ctttgcttttctgcttcttcaGCAGTAActctttgcttttctgcttcttc
aGCAGCAActctttgcttttctgcttcttcttcagCAAGTCTTTGCCTTT
CGGCTTCTTCAGcagcaagtctttgcttttctgcttcttcttcagcaagt
ctttgcttttctgcttcttcaGCAACAACTCTTTGCTCTTCTGCTTCTTC
TTCAGCAAGCCTttgcttttcttcttcttcagcagcaagtctttgctttt
ctgcttcttcagcagcaagtctttgcttttctgcttcttcttcagCAAGT
CTTTGCCTTTCTGCTTCTTCAGcagcaagtctttgcttttcttcttcttc
atcagcaagtctttgcttttctgcttcttcttcGGCAACCCTTTGCTTTT
CTGCCTCTTTAGCAACAAGTCTTAGCTTTTCTTCTTCAGcagcaagtctt
tgcttttctgcttcCTCTTCGGCAATTCTTAGCTTTTCTACTTCTTCAGC
AAGTCTTTCAGAAGCTTCTTGCTCGACTTTGTACACAAGTTCTTCGACTG
TTTGTGAAACTTCTTCTGTCGGCTTACTTTCTTCTGAAGTTTCCTCTTCG
ACTTTAGCGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCTGTTGGTTT
GATTTCTTCTGAAGTTTCCTCTTCGATTTTGGACACAAGTTCTTCCACTG
TTTCTGAAACTTCTTCAGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCG
ACTTTGGACACAAGTTCATCGACTGTTTGTGAAACTTCTTCATctgtttg
aaaaactttttctcttgGTTTGCTTTCTTCAGAAGTTTCTAAGTCGACTT
TGGACACGAGTTCTTCGACTGTTTCTGAAACTTTTTCAACTGTTTGTGAA
ATTTCTTCTGTTGGCTTGCTTTCTTCTAAAGTTTCCTCTTCAACTTTAAA
GAGAAGTTCTTCAACTGTTTGTGAAACCACTTCATCTGCTTGAGGAACAT
CCTCATTTGGTTTGCTTTCTTCAGAAGTTTCTTCTTCGACTTTGGACACA
AGTTCTTCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_276:154640..159167-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056477 ID=TCONS_00056477|Name=TCONS_00056477|organism=Clytia hemisphaerica|type=transcript|length=4528bp|location=Sequence derived from alignment at scaffold_276:154640..159167- (Clytia hemisphaerica)
AACCTGAGATATTTCTTCCAGCAGACAAATTTGCCAAACCTTCATCATCA
GACCGTGGCGAGGTGACCGTAAGCTCTTCAACATCAATCTTACTAACTTT
CAATTTCTTCATTTGTTTGAAAGTATTTGCTTCCTCTTCAGTAGCTTTGT
GTATCTTTGCAATCGTTGGGATGTCTGGCAACACCTTGCGACCAGTTCCC
GATGAAGTGAGTTTAACAACGGGTGTGGAAGTTACTGGATCTGCCGATGG
TGGTGTTTGAGTGTCATCAGCATCATTAGCAACTTCATCAATAGCATTCT
CCAGAGCCTCATCAGCAATGTTGTGGGTGATTTTATCAGCAGCAGATTTA
GCTAGGAAGTCAGTTTTCAATTTCTCAATCTCCTTTTGATGCTCCTGGTC
TTTTTCTTTCTCTTTGACTTGGTGTTCTTTCAAAACATCCGTTCGGTATC
GCATCTCCTCCAGTTCTTGTTGATGTCTCTTCTCCTCTTCTTTCTGCTTC
TCCTGCAACCGAGAGAGGCGTGCGCGTTCAGCTTCCAGTTCTAATTTCAA
GCGCTCGTTTTTCAACTCTTCTTGTTGTAGCATCAAGGTCTCGCGTTCTT
TACGAATACGTGTCTCCTCAAGCATATAGGTAGACTGACGTTCCTTTTCT
TTCTCCAATAATTGTAGCTCAAGATCTTTCAAATCACGTTTCGCCACGAC
TGCAATTGGCTCTTCCTTGGGTGTTGGAGTCATCTCACGGTTCGAAGCGA
TGACTTCAACTTGACAATTATCCAACGTGTTATTCAATACCATCTCTTCT
TCAAGCTCGCTTGTCATGGTGTCAGTCAAATGTGTAGGAATAGTTTCTTT
TGTCAAAGAGTCGTCTTTATGGTCAGATGCACCGTCATCAAGAGGTGGAG
TTATTCTAACCCCGACATGATCATCTTCCACATCAGCGTCAGCGACATCA
TCATCGTGACATTCGGTTTCACCAGTATCAACCACCTCAGAAGTCTCATT
TTGCACAGCGTCTTTACTTTCCTCAGAAACTGAAGCATCGGCTTGTGGGA
TATCTTTCATTTCTTCAGATTCAACAACGCGTTTCTCAGTAACCTCAGAT
TTGCTGTCATCAGCAACAACAACTGTTTGTATTTCACCTTCTTTTTCTTC
TTTCTTTTCAGTAACAATGTAAACTTTACCATCAACGACTTTCTCCCCTT
CTACGCTCTCTTCATCATTCTTTGTTTCTGATTCAGCATCCAATTTTGCA
ACGAGATCCTCCATCTCACCAAAGACTTCTTTCTCAGAAACATCAACAGT
ATTTGAAACCAACTCGTCAGCTTTCACCAGCAAATCATTTTCATGCGCAA
CCAATTGTTCCATCTCAGTAAACACTTCCTTCTCAGAAGCATCGATAGCT
TCCTGTGTAACCTCAACTGAAGCTTCAACAAGATCTTCCTCAAAGACCTC
GGCAACCGCATCCACGCTTGACTTATTAGCAAGATGTTCTGCATTGGAAT
CAACAGATCGTTTCATAACGTATGCTTCAGGGTCGGTTTGATAAGAGACA
AACTCGTCAAAGATTTCTTTTTCGGCAGTATTTGATGCGTTCTCACTGAC
GTCGACGGCACTGGCTTGAATTTCTTCCTCGTATACTTCACTAACAGACT
CTTTGCAGGCAATTTGTGCTAATCTTCTAGATGCGATCTCGATTTGAACA
GGTTGAAGGCTCACATACTCATTGAAGATTTCCTTTTCAGCTTCATTGAT
TGTTTCAGTAGTAAGAACTGAACTTGCATTTATTGTCTCCTCTTCTACTA
CTTCCTTCAAAGACATTTCAACGACATTTTCTGTAAGTTCATTGGCTTTA
GCATTTCGTTCTGCTTCCTCAACAGCAAGTCTCTGTTTCTCTGCTTCTTC
TGCAGCAAGTCTTTGCTTTTCTGCTTCTTCAGCAGCAAGTTTTTGCTTTT
CTGCTTCTTCTGCAGCAAGCCTTTGCTTTTCTGCTTTCTCTGCAGCAAGT
CTTTGCTTTTCTGCTTCTTCTTCAGCAAGTCTTTGCTTTTCGGCTTCTTC
AGCAGCAACTCTTTGCTTTTCTGCTTCTTCTTCAGCAAGTCTTTGCTTTT
CTGCTTCTTCAGCAGCAACTCTTTGCTTTTCTGCTTCTTCTTCAGCAAGC
CTTTGCTTTTCTGCTTCTTCAGCAGTAACTCTTTGCTTTTCTGCTTCTTC
AGCAGCAACTCTTTGCTTTTCTGCTTCTTCTTCAGCAAGTCTTTGCCTTT
CGGCTTCTTCAGCAGCAAGTCTTTGCTTTTCTGCTTCTTCTTCAGCAAGT
CTTTGCTTTTCTGCTTCTTCAGCAACAACTCTTTGCTCTTCTGCTTCTTC
TTCAGCAAGCCTTTGCTTTTCTTCTTCTTCAGCAGCAAGTCTTTGCTTTT
CTGCTTCTTCAGCAGCAAGTCTTTGCTTTTCTGCTTCTTCTTCAGCAAGT
CTTTGCCTTTCTGCTTCTTCAGCAGCAAGTCTTTGCTTTTCTTCTTCTTC
ATCAGCAAGTCTTTGCTTTTCTGCTTCTTCTTCGGCAACCCTTTGCTTTT
CTGCCTCTTTAGCAACAAGTCTTAGCTTTTCTTCTTCAGCAGCAAGTCTT
TGCTTTTCTGCTTCCTCTTCGGCAATTCTTAGCTTTTCTACTTCTTCAGC
AAGTCTTTCAGAAGCTTCTTGCTCGACTTTGTACACAAGTTCTTCAACGG
TTTGTGAAACTTCTTCTGCTGGCTTGTTTTCTTCTGAACTTTCCTTATCG
ACTTTGGACACAAGTTCTTCGACCGTTTGTGAAACCTCTTCATCTGTTTG
AGAAACTTCTTTGGTTAGTTTGCTTTCCTCAGAAGTTTCCTCTTCGACTT
TAGAGACAAGTTTTTCAACTGTTTGAGAAACTTCTTTAGTTGGATTCCTT
TCTTCTGAAGTTTCCTCTTCGACTTTTGAGAGAAGTTCTTCGACTGTTAG
TGAAACTTCTTCATCTGCTTGAGGAACATCCTCATTTGGTTTGCTTTCTC
CAGAAGTTTCTTCTTGAACTTTGGTTACAAGTTCTTCGACAGATTGAGAA
ACTTCTTCTGTCGGCTTACTTTCTTCTGAAGTTTCCTCTACGTCTTTAGA
GACAAATTCTTCGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTT
CTGAAGTTTCCTCTTCGACTTTAGCGACAAGTTCTTCGACTGTTTGTGAA
ACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGA
GACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGCTGGCTTGCTTTCTT
CTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAA
ACATCTTCTGCTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGA
GACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGCTGGCTTGCTTTCTT
CTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAA
ACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGATTTTAGA
GACAGGTTCTTCGACTGTTTGTGAAACTTCTTCTGTCGGCTTACTTTCTT
CTGAAGTTTCCTCTTCGACTTTAGCGACAAGTTCTTCGACTGTTTGTGAA
ACATCTTCTGTTGGCTTGCTTTCTTCAGAAGTTTCCTCTTCGACTTTAGC
GACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTT
CTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAA
ACTTCTTCCGTTGGCTTACTTTCTTCAGAAGTTTCCTCTTCGACTTTAAA
GACAAGTTCTTCGACTGTTTGGGAAACTTCTTTTGTTGGTTTGCTTTCTT
CAAAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGAGAA
ACTTCTTCTGTTGGTTTGATTTCTTCTGAAGTTTCCTCTTCGATTTTGGA
CACAAGTTCTTCCACTGTTTCTGAAACTTCTTCAGTTGGCTTGCTTTCTT
CTGAAGTTTCCTCTTCGACTTTGGACATAAGTTCTTCGACTGTTTGTGAA
ATTTCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCCTGTTCAACATTAGA
GACAAGTTCTTCGACTGTTTGTGAAACTTCTTCCGTTGACTTGCTTTCTT
CTGAAGTTTCCTCTTCAACATTAGACACAAGTTCATCGACTGTTTGTGAA
ACTTCTTCATCTGTTTGAAAAACTTTTTCTCTTGGTTTGCTTTCTTCAGA
AGTTTCTAAGTCGACTTTGGACACGAGTTCTTCGACTGTTTCTGAAACTT
TTTCAACTGTTTGTGAAATTTCTTCTGTTGGCTTGCTTTCTTCTAAAGTT
TCCTCTTCAACTTTAAAGAGAAGTTCTTCAACTGTTTGTGAAACCACTTC
ATCTGCTTGAGGAACATCCTCATTTGGTTTGCTTTCTTCAGAAGTTTCTT
CTTCGACTTTGGACACAAGTTCTTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035582XLOC_035582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056477-exon-scaffold_276-1575043694:156480..159167TCONS_00056477-exon-scaffold_276-1575043694:156480..159167Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1575043694:155516..155612TCONS_00056477-exon-scaffold_276-1575043694:155516..155612Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1575043694:155092..155215TCONS_00056477-exon-scaffold_276-1575043694:155092..155215Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1575043694:154640..154941TCONS_00056477-exon-scaffold_276-1575043694:154640..154941Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1510915933:156480..159167TCONS_00056477-exon-scaffold_276-1510915933:156480..159167Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1510915933:155516..155612TCONS_00056477-exon-scaffold_276-1510915933:155516..155612Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1510915933:155092..155215TCONS_00056477-exon-scaffold_276-1510915933:155092..155215Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1510915933:154640..154941TCONS_00056477-exon-scaffold_276-1510915933:154640..154941Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1491911889:156480..159167TCONS_00056477-exon-scaffold_276-1491911889:156480..159167Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1491911889:155516..155612TCONS_00056477-exon-scaffold_276-1491911889:155516..155612Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1491911889:155092..155215TCONS_00056477-exon-scaffold_276-1491911889:155092..155215Clytia hemisphaericaexon
TCONS_00056477-exon-scaffold_276-1491911889:154640..154941TCONS_00056477-exon-scaffold_276-1491911889:154640..154941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:154640..159167 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0344752	0	0	1.53484	0.815463	0.162967	0.301826	0.169473	0	0	0.255834	0.0820113	0.212578	0	0.104612	0.118178	0.0495525	0.215261	0.579542	0.254813	0.171928	0.0275194	0.0442046	0.576136	0.0916056	0.0362327	0.0401897	0.0822036	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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