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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056479 ID=TCONS_00056479|Name=TCONS_00056479|organism=Clytia hemisphaerica|type=transcript|length=1220bp
CTTGACAATGGGATATAATTAATACACCGTTTGGGGCCGAGTCAAAAATT
TAGTATAAAAGTAGCAAAAAGTTTCCTAGTGCATCATTCACAGAGCAACT
AGAATCAAAGAAACTCGCAACAAACAATCTCCAACCATCAAAACAATGGC
TTCTGCAGGCGCActtcttttaaatcaaaaagtcCCATTCATCATGGAGC
TAGACGCTGAAGTTAACGGAATCAGATTCGCAGTCCGTGGCAAGGGAACA
GGGGACGCGACAACTGGCACCATCGACACAAAATTCGTTTGCACCACTGG
TGAATTGCCAGTACCGTGGGCTTCAATCTTAAGTACAATGTCATATGGAG
CTTTATGTTTCGCCAAATATCCAGACAGcgttaaagattttttcaaatca
gCAATGCCAGATGGTTATATCCAAGAAAGGACCATCAGCTTCGAAAATGA
TGGCGCATACAAAGTTCGTGGTGTAGTTACTTACGAACATGGTTCCATTT
ACAATCGCGTCACACTTAAAGGAGAAGGTTTCAAAAAAGACGGACTTATC
CTTCAAAAACAATACGAATTTTGTTGTCCGAATAATGCAGTTTACGTTTT
GCCGGACAAAGAAAACAACGGACTCAGAGTTGTTTATAATAAGATCTACA
AATTGAAAGATGGAGGACATCATTTGGCAGCTCACGAACAAAAGAATACT
CCACTCGGCGGAGGAGTTGTTGATATTCCAAACTATCATCATCTTCATGT
TGGAAACATTTTCTCGAAGGATCCAGAAGAAACACGAGACCATATGTGTT
TGGTTGAAACTGTCAGAGCTGTAAATCTTGAAACATATAACTAAAACATT
TTATTATTCATTATGCTATTATTGAATTTATCTAGCAGTCTCGTCATAGT
TATTTAGTTAATCTTTCACTCATATGTAACACTTTTTGGATTTACTGATG
GGTTTGATACAGTTTTGAGTTTCATAcactttatttttcttatttctaaa
ctcaatttgaaagttttttggtCCTTATGAAAATTGACTCAACAGGGTAT
ATGATTCAATTTCAGTAGTCCAAtccaaatcaaaattttgtatattttgt
ttcctacaaatcttttttatataatatttgcGGTAATCTTCCATCTTTTA
ATTGTTTCATATttatatttgaattttaaagaaagaaattaaataaaaga
taaatctttttacattttac Run BLAST on NCBI transcript from alignment at scaffold_276:190257..192125- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056479 ID=TCONS_00056479|Name=TCONS_00056479|organism=Clytia hemisphaerica|type=transcript|length=1869bp|location=Sequence derived from alignment at scaffold_276:190257..192125- (Clytia hemisphaerica)
CTTGACAATGGGATATAATTAATACACCGTTTGGGGCCGAGTCAAAAATT
TAGTATAAAAGTAGCAAAAAGTTTCCTAGTGCATCATTCACAGAGCAACT
AGAATCAAAGAAACTCGCAACAAACAATCTCCAACCATCAAAACAATGGC
TTCTGCAGGCGCACTTCTTTTAAATCAAAAAGTCCCATTCATCATGGAGC
TAGACGCTGAAGTTAACGGAATCAGATTCGCAGTCCGTGGCAAGGGAACA
GGGGACGCGACAACTGGCACCATCGACACAAAATTCGTTTGCACCACTGG
TGAATTGCCAGTACCGTGGGCTTCAATCTTAAGTACAATGTCATATGGAG
CTTTGTAAGTAATTCTATTTTTGACAGAATAATAAGAGGAAGAGCGGTGT
CTAAAGCACTACAAACAAAAGTTATCAGTTCATAATCTCGTTCAATTCAT
AGATAACCAACCCTGTTGATCGTAGATCTTATGACATCACGATCGAAAAC
TCTAAAATCTAAAAATCTCACAATCATGGACAAAAAGTTTGTAGACTTCT
GCAATATTTGCCTTCTGTATCATTTTTATCAGTTTCTATATCATTCTCAT
CAATTTTGTTTCACATTTAGATGTTTCGCCAAATATCCAGACAGCGTTAA
AGATTTTTTCAAATCAGCAATGCCAGATGGTTATATCCAAGAAAGGACCA
TCAGCTTCGAAAATGATGGCGCATACAAAGTTCGTGGTGTAGTTACTTAC
GAACATGGTTCCATTTACAATCGCGTCACACTTAAAGGAGAAGGTTTCAA
AAAAGACGGACTTATCCTTCAAAAACAATACGAATTTTGTTGTCCGAATA
ATGCAGTTTACGTTTTGCCGGACAAAGAAAACAACGGACTCAGAGTTGTT
TATAATAAGGTTAGTTCTTCTAGGAGATATTTGTTTTATTGTTTTTGTCG
ATATTGAATTCAACAAATAATTCTTGATAGCTTCAAACTATACCCGGACC
ACTGCCCTACAGGAAAATTTTACTCTAAAATTACTTCAAAACATGATTTT
GATTGAAACTTTTATCCCCACCTGTGGGAAAAAATTCCATCGTGGCAATG
AGATAGGTGGTGTACGTATTCCAAAGACAAATGTTGCAGAAATCTACTGT
ATGTAGATTTTTCTCATGTCCTCATGATGTTTTAGCGGATTCCAGCTTGC
ACCAGTTTTTTCAGTCTTAATCCTTTCCAAGTTTTTATGTTCTTTCTTTT
CTGTCGTTCTTTTTCATTTTGAATCTTTATCTTTGTTCACAGATCTACAA
ATTGAAAGATGGAGGACATCATTTGGCAGCTCACGAACAAAAGAATACTC
CACTCGGCGGAGGAGTTGTTGATATTCCAAACTATCATCATCTTCATGTT
GGAAACATTTTCTCGAAGGATCCAGAAGAAACACGAGACCATATGTGTTT
GGTTGAAACTGTCAGAGCTGTAAATCTTGAAACATATAACTAAAACATTT
TATTATTCATTATGCTATTATTGAATTTATCTAGCAGTCTCGTCATAGTT
ATTTAGTTAATCTTTCACTCATATGTAACACTTTTTGGATTTACTGATGG
GTTTGATACAGTTTTGAGTTTCATACACTTTATTTTTCTTATTTCTAAAC
TCAATTTGAAAGTTTTTTGGTCCTTATGAAAATTGACTCAACAGGGTATA
TGATTCAATTTCAGTAGTCCAATCCAAATCAAAATTTTGTATATTTTGTT
TCCTACAAATCTTTTTTATATAATATTTGCGGTAATCTTCCATCTTTTAA
TTGTTTCATATTTATATTTGAATTTTAAAGAAAGAAATTAAATAAAAGAT
AAATCTTTTTACATTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056479-exon-scaffold_276-1575043694:191772..192125 | TCONS_00056479-exon-scaffold_276-1575043694:191772..192125 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1575043694:191217..191505 | TCONS_00056479-exon-scaffold_276-1575043694:191217..191505 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1575043694:190257..190833 | TCONS_00056479-exon-scaffold_276-1575043694:190257..190833 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1510915933:191772..192125 | TCONS_00056479-exon-scaffold_276-1510915933:191772..192125 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1510915933:191217..191505 | TCONS_00056479-exon-scaffold_276-1510915933:191217..191505 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1510915933:190257..190833 | TCONS_00056479-exon-scaffold_276-1510915933:190257..190833 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1491911889:191772..192125 | TCONS_00056479-exon-scaffold_276-1491911889:191772..192125 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1491911889:191217..191505 | TCONS_00056479-exon-scaffold_276-1491911889:191217..191505 | Clytia hemisphaerica | exon |
| TCONS_00056479-exon-scaffold_276-1491911889:190257..190833 | TCONS_00056479-exon-scaffold_276-1491911889:190257..190833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:190257..192125 - |
Blast
The following BLAST results are available for this feature:
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