TCONS_00056532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056532
Unique NameTCONS_00056532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056532 ID=TCONS_00056532|Name=TCONS_00056532|organism=Clytia hemisphaerica|type=transcript|length=769bp
tatattattttaccaACCTTTTTTATCATACACTATCTACATTTTATCAA
GGCGACTAGAAGTAGCTTTAGAGTTTCAGTGAGGTTCAACTTATGTGTAT
ATTTTTTGACAGCTTTATCTTATTTTCCCGGGGAGGGTTATTTATATGGT
CTGACcaacggcatgtgccgcccttaagggtagttTTTTTGATACCCTCG
AAATACACTGTAAAAgtgtgtacttttgatagagtgcactacaagagtct
tcttttagctggatacactgtaGGGTGTGTTTGGGGGCTGTGGAATtgca
agtctgacagtaaaaatctgatgtatctttatagttttgactcaCACCCA
TTTTTTTCTGCACCCCAGAGGGGGGGGTTATAGGGTTGGTGGATGAGGGG
CATGTGCGGATGGAACTTCCAAAAAGCgatccttagagagaccaaactCT
TAGTGAAAAAGTGTCCCTTTAgcctatttttgaaaaatgtcttaccctta
aagaaataatttttacaaaagaTATCCTAAAAATCGTAATTTTTTCGACC
CCTAGAGGAACTACTTTGGaatttttatgacttttgtGACCcttccgcac
atacccagcaccaaTTTTTGCCTAATATATGCCATCGTTTATAAATCGAG
TGCCCAACTGGCTTGTTTTAAAGTCAAATCTttaatatttctattttata
tattttttttgcatattaagctttttaaattgtctttgttttaaaaagga
agaaaaacaaacaaagaat
Run BLAST on NCBI

transcript from alignment at scaffold_276:209856..210624

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056532 ID=TCONS_00056532|Name=TCONS_00056532|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at scaffold_276:209856..210624 (Clytia hemisphaerica)
attctttgtttgtttttcttcctttttaaaacaaagacaatttaaaaagc
ttaatatgcaaaaaaaatatataaaatagaaatattaaAGATTTGACTTT
AAAACAAGCCAGTTGGGCACTCGATTTATAAACGATGGCATATATTAGGC
AAAAAttggtgctgggtatgtgcggaagGGTCacaaaagtcataaaaatt
CCAAAGTAGTTCCTCTAGGGGTCGAAAAAATTACGATTTTTAGGATAtct
tttgtaaaaattatttctttaagggtaagacatttttcaaaaataggcTA
AAGGGACACTTTTTCACTAAGagtttggtctctctaaggatcGCTTTTTG
GAAGTTCCATCCGCACATGCCCCTCATCCACCAACCCTATAACCCCCCCC
TCTGGGGTGCAGAAAAAAATGGGTGtgagtcaaaactataaagatacatc
agatttttactgtcagacttgcaATTCCACAGCCCCCAAACACACCCtac
agtgtatccagctaaaagaagactcttgtagtgcactctatcaaaagtac
acacTTTTACAGTGTATTTCGAGGGTATCAAAAAaactacccttaagggc
ggcacatgccgttgGTCAGACCATATAAATAACCCTCCCCGGGAAAATAA
GATAAAGCTGTCAAAAAATATACACATAAGTTGAACCTCACTGAAACTCT
AAAGCTACTTCTAGTCGCCTTGATAAAATGTAGATAGTGTATGATAAAAA
AGGTtggtaaaataatata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035612XLOC_035612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056532-exon-scaffold_276-1491911889:209856..210624TCONS_00056532-exon-scaffold_276-1491911889:209856..210624Clytia hemisphaericaexon
TCONS_00056532-exon-scaffold_276-1510915933:209856..210624TCONS_00056532-exon-scaffold_276-1510915933:209856..210624Clytia hemisphaericaexon
TCONS_00056532-exon-scaffold_276-1575043694:209856..210624TCONS_00056532-exon-scaffold_276-1575043694:209856..210624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:209856..210624 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0633828	0.185338	0.215275	0.441494	0	0	0.244351	0.305012	0.213661	0.396766	0	0.127327	0.168641	0.140984	0.215972	0.270465	0.332913	0.195098	0.202037	0.0704725	0.122507	0.0896318	2.17918	5.48721	2.31266	4.2494	94.6202	51.71	1.27118	1.22072
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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