TCONS_00056484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056484
Unique NameTCONS_00056484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056484 ID=TCONS_00056484|Name=TCONS_00056484|organism=Clytia hemisphaerica|type=transcript|length=984bp
CAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCT
CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACG
AAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC
ACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTG
GGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCTCTGTTTCACCAAAT
ATCCAGACAATATTAAAGATTTCTTCAAATCAACCCTTCCTGACGGTTAT
ATTCAAGAAAGGACTATTAGCTATGAAAATGATGGTTCATGGAAAGTTCG
TGGTGTAATCACTTACGAACATGGTTCCATTTACAATCGCGTCACACTTA
AAGGAGAAGGATTCAAAAGAGACGGACACATCCTTCAAAAAAGATACGAC
TTTTGCTGTCCGAATAATGCAGTTTACGTTTTGCCGGATAAAGAAAACAA
CGGACTCCGAGTTGTTTTCAATAAGGCTTTCAAATTGAAAGATGGAGGAT
ACCATTGTGCTAAACACGAACAACAGAATATTCCACTGGGCGGAGGAGTT
GTTGATATTCCAATTTATCATCATCTTCATGTTGGAAACATTTTCTCGAG
AGATCCAGAAGAAACACGTGACCACTTGTGTTTAATCGAAAAGCTCACAG
CTATAGATCTTGAGACATACAATAACTGAACATAttattcttcatttaat
ttataTTTACCCTACCGATATCATTGACATTAGCTTTAAATTGAAGTTAG
AGTACGTTTTATTTAAGCGGGTGTAAAACCTTTCCCCacaccttttcaaa
aattacgtcatgTGCAACATACCTCtacttcaaaatatttctacttctgg
taattgattcccagaggagttcataagaagttGACTCTATCTAAAAAGTC
TCAAGGAATATACTCTCGGGTAACTAATAGCGGG
Run BLAST on NCBI

transcript from alignment at scaffold_276:211069..217949-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056484 ID=TCONS_00056484|Name=TCONS_00056484|organism=Clytia hemisphaerica|type=transcript|length=6881bp|location=Sequence derived from alignment at scaffold_276:211069..217949- (Clytia hemisphaerica)
CAACATACACATAGACAACCAATCAAAATGGCTTCTGCAGGAGCACTCCT
CTTAAAACAAAAAGTCCCATTCGTCATGGAGCTAGACGGTCAAATTAACG
AAATCAAATTCTCAGTCCGGGGCAAGGGGACAGGGGACGCAACAACTGGC
ACCATTGACGCCAAATTTGTATGTACCACTGGTGAATTGCCAGTACCGTG
GGCTTCAATTTCGAGTGCGATGTCATATGGAGCTCTGTAAGTATCACAGT
ACTCTTAGAGGGGAAGAAAGGTCCTATTCCAAAGAGTATACAATTTCCCC
CAGAAAGACTCTTCTACACTTTACAGATCATCTAACTAATGACGCAATGT
TTCGAGCTCCAACCCTTACCCTAACTGATAAGATCAAAATAATCAAAAAT
CGAAAATATCGAAAAGGTCAAAAAGGAAGAATAAAAAAATTCCACTCCAG
AAGCAATTACCCCGAGATTACTTACTTCCCAGAAAATAGATACTACCTGG
TACCCAGAATGGTTGTAACCCCTCTGGGAAATTATTACTCCCTGCTGAAA
AAAATCTTACTTCTATAATAAAAGTGGACATCCTTAAAAAAAAGACAGTC
CTTGTAACTTTCGTTTGCTAACTGAAAATTTTGAAAGTTTTTTATGCTTT
TCAGAAAAAACAGGCTTTCTACTTTTTATACTATCTTGTCACTGAGATAC
CCAGCTGACACACAACGTTGTTTTAACGTTAATACAAGAAAGCCTAAGTG
GCGTAAAGACCCAGCAGTGTTAGCGCTGTCAGCATATTTTTCCGCTGCAG
AATCACCACACAACAGGGGCAAACTTATTCAATTTATTGACTCGAGTCGG
GCAAGAAATAAAGATTTAATTACTTTACTTACCATAGTCGTGAAATTGAT
TTTAGTGTTTGAACATAAAAGTTATGTTTTAGGTTCTTTAACACTTTCAA
CAAAGAATTGACTTTATAAATTGCTTTTTAATGAAATCCCTTAAAGGGAA
TAGCGCTATACTTATAGTAGGGGTCGGAGTTGCTGGTAATTCCATGGTAT
ACTCTGAAATACATGCTGATGTCAGCCCGAAAGCTGATTGGCTTANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTGGTTTTTGTTATGATCCAGCACTCCTAAATACTCCTCCG
TATGGGTGTTTGTGCCAATGCTAGATCAGCATTTCATAAATATACCATGC
GTCGTTCCCTTTAAGAGTAATTAAGAATTTCATTGCAAAAATGACGTTAT
GAACTTTTAAAAGACGTTAATAATATGTTGCATCACCTTCTTTTATAAAA
AGTGCTAAGCTTTAATGGGTAATTAACCTTTTTGTTTTTTTCAAAATGTC
CGCAAAGAATTGAACTGTTTTACATTTTTCGGAAAATTTTTCTAAATTAA
TGCATCAAAAGTTATGGCTGTTTTTCTATGAAAAATTGGGATGGAAAATT
GGTCAAAAAGCACTATTTTCAAGATTTTGAAGGAAACAAGCTTTTAGAAA
AATTTTCCGAAAAAATAATTTTAGTTCAATAAAAGATACACCATATACCG
CAAAAAAAATTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAA
GTTGAAATACTCTTCACTACAAAAGTCTTTATTTGCTTCTTCATCAAATT
TTTTCATTGTGATTCTTAAATTTTCAGACTCAAGGATAATTGGCCTAACA
GAAAATGTATAACAAGCCACAGTTTTGTGGGCTACATCAAGTAGAACTTT
ATATTTTGTAAGTGGCAAATTTATGGTCAGAGCCCTTAAAGGCCCAATGC
GCTGCTCTGTTCGGCCAATAACGTTGTGAACATTAGATAAACGGGGGATA
AACGTTAAAACAACGTCTAGGCAATGCGACTAACGGTCTTCATGAAACAC
GCGTTTATTCTTTCAGCTGTTTCACCAAATATCCAGACAATATTAAAGAT
TTCTTCAAATCAACCCTTCCTGACGGTTATATTCAAGAAAGGACTATTAG
CTATGAAAATGATGGTTCATGGAAAGTTCGTGGTGTAATCACTTACGAAC
ATGGTTCCATTTACAATCGCGTCACACTTAAAGGAGAAGGATTCAAAAGA
GACGGACACATCCTTCAAAAAAGATACGACTTTTGCTGTCCGAATAATGC
AGTTTACGTTTTGCCGGATAAAGAAAACAACGGACTCCGAGTTGTTTTCA
ATAAGGTTAGCTTTTTCACCTTTGTCAATTACTCTCCCGGGGGGGGGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGTACTTAGGTATGTGAGAT
GACGGATATGTTCGAGCATGGATTTATCATAGAACTCTGGATATACACAA
CGAGCTGGTTTTTCATCGATTTCTCATGTTCTAGCCTTGTCCGCAGTAAT
GACAATATTGTTCACCCTCCTCCATTCACTAATAATTTTTCGTAGATTTA
TTTATTGCATTTTTCATCAAAACACAGCTATACAATTCCCAAATGAGACT
TAAAGATCTCTCAAGAGAGTCAAATGAATCAAATTGATTGCTAATGATAT
GTCGTTATGACGTTTCAAGCTGTGAGAAAGATGCGACAAACATGCTATGT
ATAAGAAATTGAATGTTAACACNTATCTTCCTTTTCGCTATCAAAAACAA
TGAAAATATTTGTAAAATACCATTATCTACAATCATACCGCCGAAATATA
TTGGTAATTTTTGGTATTTTAAACACCCCTGTCTCTGTGCCCCAGTGGGT
GTTGAGTACCCAGTGGGGTGAGAATGAAAAAACCTGAAATTCACTGGGGT
GAAAAATCTTCGCTCAAATATTGAGTGGGTGGCGAAAATTTCACTGACAT
TCACTGGGGTGAGAAAGAATTTTTAGCATGAGCTAAATTTTGGTTAGCCT
GTTAGACGAAAACCGCTTAATTACTAAGCGGTTTTCGTCTAACAGTTCTA
TCGTGTTTTAACGATGGAAGGTACTGGCTAACTTTTGGTCTAGTCAAAAT
CTGCTTCTTACATGCTACTAAAGTAGAAATATCATCTNTCAAGATACTCC
AGTCTAACATATGTCAATCCTAGCTCTTCCAAGGAAAAAATTGGAAAGAT
ATTGCCAACCTTATTTTCAGCGTCATTCTAGAATTTTAATCAATTTTTCT
TGTTTGATGAAGTTTTTTCCACATTTAATTTCATAAATGTATTCGTTAAC
CTTTCTTGTTTTCATTTTCAAAGTTGCATCCGGTAAATATACTAAAACAA
GAAGTTACAGGACTTTTTAGAAATGGGATTATTAATCATTTTTCAAAATC
AGGGACCTCGAGCCGCTAGGACAGTTGTCCTTTGCGGACAAAGCTAGAAC
ATCGATTGTTTTCTAAAACAATGGAAAGACAATAGTTCGCTCTCCACCGT
TTTATTTGATGTTTATCCAGAGTTCTATGATAAATCCATGGTTCGAGTCA
AAGTTCGAAAATCAACCCTTTCGAAAATTTCGTCCATTTTTCGACGTTTT
TGCCAGCCCTTGAGAGAGCAAAGCAAAATTTCAGCCAACATTTTTCAGCC
AACATTTTTTATAACTTTAATCCAAATTTCCAGAATTCATGATCCTTTGA
GTCAAACAATTTTTGATTTTCGTAATTTTAGAACCATTTTACAGGGGCTC
TATTGATTTTTTATGGGTTTTTTTTACCCCTTTTAGGAACTTTAGAGGGA
GTGAAAAAAGGATCCTTATGGGTTGCACCAACCCAGCACCTATTTTGCCT
AGTACCCACCCCTTCCCTTCCAGTTTCAACTGAATAATCATTAACAACCT
TCAAGTACAATATCTTCCTTTTCGCTATCAAAAACAATGAAAATATTTGT
AAAATACCATTATCTACAATCATACCGCCGAAATATATTGGTAATTTTTG
GTATTTTAAACACCCCTGTCTCTGTGCCCCAGTGGGTGTTGAGTACCCAG
TGGGGTGAGAATGAAAAAACCTGAAATTCACTGGGGTGAAAAATCTTCGC
TCAAATATTGAGTGGGTGGCGAAAATTTCACTGACATTCACTGGGGTGAG
AAAGAATTTTTAGCATGAGCTAAATTTTGGTTAGCCTGTTAGACGAAAAC
CGCTTAATTACTAAGCGGTTTTCGTCTAACAGTTCTATCGTGTTTTAACG
ATGGAAGGTACTGGCTAACTTTTGGTCTAGTCAAAATCTGCTTCTTACAT
GCTACTAAAGTAGAAATATCATCTTGATCAGGTGGATATACTCTCACAGC
ACTGTAACAGGAAATGTAATGAGGTCTGGGAGAAGGGGGCTATAGGGGAG
CAGTATGGTTATATCAAATTTTATAAACTCTGGGACCTAGTAATGTTTAG
TCAACATGGTTAAAGTATTTCAGTATCTACGCAAGTGAGAAAGCCTCTCT
TTTGAGGCTAGAACCTAGCTTTAAAGAAAGAAAGGGCCAAGTACAACCGT
GGTTTGCGCTGACAGAGAAAGTTTTGATTTTCAGCCCCTCTCGTTTGGCA
CTTTCCACGTTTTAAAATGACCATAGAAGTCGGGTTGAATACAGCAAATA
TATTTAAGTGGAACATTTGATGGCGAGCGAGCGAAGCGATCAAATTTTTT
TTGGCTTTTTCGGATATTTCACTTTAAGAAAAGGGGAAGTAGAAAATTCT
AGCGGGGCGATTTTTTGAAAGAAAAGTTCTACTGGGGTACGTTAAAATAA
GGGCTTTTCGAGTGGGGTATGTGTAAACTTTTTATCATTTTCAATGGGGT
GCTTTTTTACTACAACATTCCAGTGGGGTGAGTGATTTGTCCAGTGGGGC
TGAAAAATGAGCCATTTTTGGAAAAATAATTCACTGGGGTGACCAGTGGA
GTGGATCCCATTGGGTCACAGAGGCAGGGGTGTTTTTAACGTTTTTCAGA
GAATTGCAGTTTCAGTACTTCCACTTTGCTTCATTGAATTTTTCGATTTG
GGAAGGGTTAAGTGACTCCCAGGCTATATTCTCAACCTTATTGGAACATT
TTTGAGCTTTTATATCCTGAGTCATAAGTCTGATGNGGGGTTAAGTGACT
TCCAGGCTATATTCTCAGCCTTATTGGAACATTTTTGAGCTTTTAGATCC
TGAGTCTTAAGTCTGATGTTAAAGCTCACAGTTAAAATTCTACTTGCTTA
CTGTACTTCAAAGCACTTAAAAATCCCTTGCAGTTTTAAAGTTTTGAGGG
TATTTCCCTTTTGTGTCAATTTTTTCGGCGCCGCGATTGTAGTTATGCAA
CTGGACACACTTTACACCATTTCCAGCTGCGAAGGCACCTAATTAAAAAG
GGTTGAGTTAGACTTTAAATTTACAATATTATTGCAAAATGGAGTTTCTA
ATTTTGTTATACATTTGCACAGGCTTTCAAATTGAAAGATGGAGGATACC
ATTGTGCTAAACACGAACAACAGAATATTCCACTGGGCGGAGGAGTTGTT
GATATTCCAATTTATCATCATCTTCATGTTGGAAACATTTTCTCGAGAGA
TCCAGAAGAAACACGTGACCACTTGTGTTTAATCGAAAAGCTCACAGCTA
TAGATCTTGAGACATACAATAACTGAACATATTATTCTTCATTTAATTTA
TATTTACCCTACCGATATCATTGACATTAGCTTTAAATTGAAGTTAGAGT
ACGTTTTATTTAAGCGGGTGTAAAACCTTTCCCCACACCTTTTCAAAAAT
TACGTCATGTGCAACATACCTCTACTTCAAAATATTTCTACTTCTGGTAA
TTGATTCCCAGAGGAGTTCATAAGAAGTTGACTCTATCTAAAAAGTCTCA
AGGAATATACTCTCGGGTAACTAATAGCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035583XLOC_035583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056484-exon-scaffold_276-1575043694:217714..217949TCONS_00056484-exon-scaffold_276-1575043694:217714..217949Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1575043694:215295..215583TCONS_00056484-exon-scaffold_276-1575043694:215295..215583Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1575043694:211069..211527TCONS_00056484-exon-scaffold_276-1575043694:211069..211527Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1510915933:217714..217949TCONS_00056484-exon-scaffold_276-1510915933:217714..217949Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1510915933:215295..215583TCONS_00056484-exon-scaffold_276-1510915933:215295..215583Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1510915933:211069..211527TCONS_00056484-exon-scaffold_276-1510915933:211069..211527Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1491911889:217714..217949TCONS_00056484-exon-scaffold_276-1491911889:217714..217949Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1491911889:215295..215583TCONS_00056484-exon-scaffold_276-1491911889:215295..215583Clytia hemisphaericaexon
TCONS_00056484-exon-scaffold_276-1491911889:211069..211527TCONS_00056484-exon-scaffold_276-1491911889:211069..211527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:211069..217949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137333	0	0.519287	0.126995	0.0753765	0.0595838	0.283205	0.0854979	0.0773095	0.119693	0.164222	0.0305472	0	0	0	0	0.288725	0.271547	0	0	0.0442635	0	6.63774	13.0338	9.31457	16.2947	236.21	120.296	1.66445	3.89779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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