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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056487 ID=TCONS_00056487|Name=TCONS_00056487|organism=Clytia hemisphaerica|type=transcript|length=1152bp
attAGAGCTAAGCATTAGCTCATGTTAATTTCGAGGAAGCGACTAACGCT
ACGCCCATCACGGCTCTTACGCCCTTACGCATTAAACATACGCCCGCTTG
gtggccatcttgaattttagCCTATAAACCGTGACCGAAAATCGAAACac
attcttttaaaatcatAATGTCTTGGAATTTGATGAGTGAAGTCATGTGG
ATTCTTGGAAAACTTATCCTGTAAATTTAATCAAGCTGTTGTAACTCGTT
GATCCTGTCGTAGTTGGAACCATCTTTGTGTAAATTATTTGGCATTCTGT
CGTGCATGGTATCAATCAAATTTTGGGATACTGAACATTGCAACTTCCCT
TTCTTGTGTGTTTACATTCGACCTGGTTGATTTGAGAATCTGCGAAATGT
GGTGACCTTTCGAGACCGTTCCCAATCCATTTGTGGCCGTAACGCAGCCT
TGGCTTGTCTGTCAACCTCCACACACCAATCAGCAGAGTGATTCCTGCCC
TGTTGCGACCTAGATTCCATCAACAACTCCAAGCGTGCTGGGGTCACCAA
CTAAAGGCTGAGAACTAAGTCGAAATTTGGACATACTGGGGATCTCTGAA
GTGTTTGaaaggcaaaaatttgcaatcatggtccttgggtgaatccctgg
gttagtttttcttcattttcaatgtgaTATGATTCAAGGGTGTTTTCACA
CCCCATAACGCCAATATATAACACCATTACTTAGTTTACTTAGTTTACAG
GATACTTTAGAGTGATTcgatttggctggaattttgcaTATTGCTCCTTG
GGTAATTCCTCAGTCCTAATTAGCATGCGGGTCTACAATTGGCCTCTGGG
AGACTATGAAGATGCCGAAGCTGAGCTGGTGTTGTAAGCACCTCCAAAAC
TTTCCATTGGGGGATAATTACCGTGCTCATAGTCAGTTTAGAGGCATATT
ACATTTTGTCGCTACCCTTTTTATGCGAGAATCTTTCTAATTCATGAATA
AACTTGATTTACcacaaaacttttcattttcgtcATGCTGTCCCACAGCT
cgaaatttcaacttttcatgccgtcccgcggttaaattttcaattttatc
atgCTGTCCCGCAGTTTAACTCTTCAATTTTATCATGCTACCCTGTGGCT
TG Run BLAST on NCBI transcript from alignment at scaffold_276:238317..240215- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056487 ID=TCONS_00056487|Name=TCONS_00056487|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at scaffold_276:238317..240215- (Clytia hemisphaerica)
ATTAGAGCTAAGCATTAGCTCATGTTAATTTCGAGGAAGCGACTAACGCT
ACGCCCATCACGGCTCTTACGCCCTTACGCATTAAACATACGCCCGCTTG
GTGGCCATCTTGAATTTTAGCCTATAAACCGTGACCGAAAATCGAAACAC
ATTCTTTTAAAATCATAATGTCTTGGAATTTGATGAGTGAAGTCATGTGG
ATTCTTGGAAAACTTATCCTGTAAATTTAATCAAGCTGTTGTAACTCGTT
GATCCTGTCGTAGTTGGAACCATCTTTGTGTAAATTATTTGGCATTCTGT
CGTGCATGGTATCAATCAAATTTTGGGATACTGAACATTGCAACTTCCCT
TTCTTGTGTGTTTACATTCGACCTGGTTGATTTGAGAATCTGCGAAATGT
GGTGACCTTTCGAGACCGTTCCCAATCCATTTGTGGCCGTAACGCAGCCT
TGGCTTGTCTGTCAACCTCCACACACCAATCAGCAGAGTGATTCCTGCCC
TGTTGCGACCTAGATTCCATCAACAACTCCAAGCGTGCTGGGTGAGTCGT
TTCCTTTTTAGAGTTTGTTGTCCCATCTATACGTGTCCAGCATTCCCACA
TGCATCTCTAATAGCACACTGACTATTATTATGCCTCACCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGGCTGATTTTGCTAAAGTTTTGCACATTTAAGTCC
CTTGGGTATAAGTCCTTGGGGCATTCCTCTCATTTTTAATTGAATTTAGA
TGGGAGGGACGTACAGATAGGTTCTGGCATACCTTGGTCAATACTATGAA
GTAGGTAATATTTTGCATGCTTGTTCCTTGGAATCCTAGGAGTGTTTTGT
TATTCCCCCTAGAGGTTGATTGGTGCGAATTTTGCACACAAGTTCTTGAG
TGTATCCCTGGGTGTNCTGGCATACCTTGGTCAATACTATGAAGTAGTTA
ATATTTTGCATGCTTGTTCCTTGGAATCCTAGGAGTGTTTTGTTATTCCC
CCTAGAGGTTGATTGGTGCGAATGTTGCACACAAGTTCTTCAGTGTATCC
CTGGGTGTGCTTCATACTCTATTGGATTTTGGGGGTGGGGTTACTGGTTT
TTGTCCTAAACTTACAAAAATGTGGGCAGGCTGGAGACCTCGAAATTGTC
TGAATTCGCTTCAATTTCGAGCACATTGCGCTTTGGGTGAATTCACTGGG
GCGTTTCCCCATTTTTCAATTTTGCAATTTAGTTTTAGGGTCACCAACTA
AAGGCTGAGAACTAAGTCGAAATTTGGACATACTGGGGATCTCTGAAGTG
TTTGAAAGGCAAAAATTTGCAATCATGGTCCTTGGGTGAATCCCTGGGTT
AGTTTTTCTTCATTTTCAATGTGATATGATTCAAGGGTGTTTTCACACCC
CATAACGCCAATATATAACACCATTACTTAGTTTACTTAGTTTACAGGAT
ACTTTAGAGTGATTCGATTTGGCTGGAATTTTGCATATTGCTCCTTGGGT
AATTCCTCAGTCCTAATTAGCATGCGGGTCTACAATTGGCCTCTGGGAGA
CTATGAAGATGCCGAAGCTGAGCTGGTGTTGTAAGCACCTCCAAAACTTT
CCATTGGGGGATAATTACCGTGCTCATAGTCAGTTTAGAGGCATATTACA
TTTTGTCGCTACCCTTTTTATGCGAGAATCTTTCTAATTCATGAATAAAC
TTGATTTACCACAAAACTTTTCATTTTCGTCATGCTGTCCCACAGCTCGA
AATTTCAACTTTTCATGCCGTCCCGCGGTTAAATTTTCAATTTTATCATG
CTGTCCCGCAGTTTAACTCTTCAATTTTATCATGCTACCCTGTGGCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056487-exon-scaffold_276-1575043694:239675..240215 | TCONS_00056487-exon-scaffold_276-1575043694:239675..240215 | Clytia hemisphaerica | exon |
| TCONS_00056487-exon-scaffold_276-1575043694:238317..238927 | TCONS_00056487-exon-scaffold_276-1575043694:238317..238927 | Clytia hemisphaerica | exon |
| TCONS_00056487-exon-scaffold_276-1510915933:239675..240215 | TCONS_00056487-exon-scaffold_276-1510915933:239675..240215 | Clytia hemisphaerica | exon |
| TCONS_00056487-exon-scaffold_276-1510915933:238317..238927 | TCONS_00056487-exon-scaffold_276-1510915933:238317..238927 | Clytia hemisphaerica | exon |
| TCONS_00056487-exon-scaffold_276-1491911889:239675..240215 | TCONS_00056487-exon-scaffold_276-1491911889:239675..240215 | Clytia hemisphaerica | exon |
| TCONS_00056487-exon-scaffold_276-1491911889:238317..238927 | TCONS_00056487-exon-scaffold_276-1491911889:238317..238927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:238317..240215 - |
Blast
The following BLAST results are available for this feature:
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