TCONS_00056488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056488
Unique NameTCONS_00056488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056488 ID=TCONS_00056488|Name=TCONS_00056488|organism=Clytia hemisphaerica|type=transcript|length=1267bp
atttggttttggttttggcAATCTTGCGGTGAAAATGCTAATCGTAAATA
CAAGAGGAAATAACCAATCCATCAGTACACAGATGGCTATTATACCTACT
AAGAAAGTACTGATTGACGGCTGGGATCTCCCCGTCTACGGGATCGAGCA
AGGACAATTTGCTGCTATCCACATCCCAGCTTTAACGTGTATATTTCTAA
GTTTGATTGCCGCTATTTGCGTATTGGTATTTTCATTTAAGACGAAAAGT
TTTCGAACGTTTTTCATGTGGAATAAAAGCGAACGTTTTGTTGTTTATCT
GGCAATCTGTGATGGTCTGTTTAATATATGCCATTCCTTGGATCATTTAC
ATATCTTCATAACACATGATCACCCGTATCCCAAAAGCCTTTGCGAGTTT
TATGGATTTATGCTAGCTGAATTTATAACAGCCCAAAACCTTATGGTTAA
CGTTGTCTCCATTAATGCATTTGTTTTGATCTATTTTCGAACCAATATGG
ATTTTGGTAAATGTGATTACAAATTGTTATTGTGGACCTTTGGACTTCCG
TTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCACCATGGGGCCGAATGG
GACCTTctgCTATTTCGATGGTGTGAATGGAGAACTCGCAAACCTCTTTT
TTACGACTGTCCCCTTGACTGTTATTTTGCTGACCAATATCATCTTATAT
CTTCTAACTTGGCGTCGCATAAAACAAGAAGAACCTAAATTTAAAGGCAT
CAATGGCCGCGAGGCTAGAATCGTACGCGCGTCACATCGAGCGGCCCGCA
CAATGACTTTATTTGTAACAGCCTTTATAATACAATGGTGGGCAATGTGT
ATTTACGGGATAGTACAGATGTTAGTTGAAGTGCCGATAGAACTATTCCA
ATTCGTGACAACATTTTCGAACGTCGGTGGCATACTAAACGGAATTGTTT
ATTACATCATTAGACGGCGTTCCAGAGAAAAACATTCAGAGGCTAGTTTA
GAGCTATCGAAATCGGACGGTAGCAAAAAGTTTACGCGCATGACAAATTC
GAATTCACCGACATTGGATGGTATCAGTAGTGGTCAGGAAGAAGTTGAGG
AATCATCCACTAAGCTTTGATTTGTTATGTCGGTACTATTGAGTTAAAAT
CCTGATGAACTTTGCAAGCAATAAGATGTGAAGGTCCAAAGATTTGTGAG
CATTcagaatgacggattgaatctagtgcTTTTTACGAAACCTTTTTTAC
ATTCAATCCGacgtttg
Run BLAST on NCBI

protein sequence of TCONS_00056488-protein

>TCONS_00056488-protein ID=TCONS_00056488-protein|Name=TCONS_00056488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
FGFGFGNLAVKMLIVNTRGNNQSISTQMAIIPTKKVLIDGWDLPVYGIEQ
GQFAAIHIPALTCIFLSLIAAICVLVFSFKTKSFRTFFMWNKSERFVVYL
AICDGLFNICHSLDHLHIFITHDHPYPKSLCEFYGFMLAEFITAQNLMVN
VVSINAFVLIYFRTNMDFGKCDYKLLLWTFGLPFVAAIVALSLGTMGPNG
TFCYFDGVNGELANLFFTTVPLTVILLTNIILYLLTWRRIKQEEPKFKGI
NGREARIVRASHRAARTMTLFVTAFIIQWWAMCIYGIVQMLVEVPIELFQ
FVTTFSNVGGILNGIVYYIIRRRSREKHSEASLELSKSDGSKKFTRMTNS
NSPTLDGISSGQEEVEESSTKL
Run BLAST on NCBI

transcript from alignment at scaffold_276:243225..246252-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056488 ID=TCONS_00056488|Name=TCONS_00056488|organism=Clytia hemisphaerica|type=transcript|length=3028bp|location=Sequence derived from alignment at scaffold_276:243225..246252- (Clytia hemisphaerica)
ATTTGGTTTTGGTTTTGGCAATCTTGCGGTGAAAATGCTAATCGTAAATA
CAAGAGGAAATAACCAATCCATCAGTACACAGATGGCTATTATACCTACT
AAGAAAGTACTGATTGACGGCTGGGATCTCCCCGTCTACGGGATCGAGCA
AGGACAATTTGCTGCTATCCACATCCCAGCTTTAACGTGTATATTTCTAA
GTTTGATTGCCGCTATTTGCGTATTGGTATTTTCATTTAAGACGAAAAGT
TTTCGAACGTTTTTCATGTGGAATAAAAGCGAACGTTTTGTTGTTTATCT
GGCAATCTGTGATGGTCTGTTTAATATATGCCATTCCTTGGATCATTTAC
ATATCTTCATAACACATGATCACCCGTATCCCAAAAGCCTTTGCGAGTTT
TATGGATTTATGCTAGCTGAATTTATAACAGCCCAAAACCTTATGGTTAA
CGTTGTCTCCATTAATGCATTTGTTTTGATCTATTTTCGAACCAATATGG
ATTTTGGTAAATGTGATTACAAATTGTTATTGTGGACCTTTGGACTTCCG
TTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCACCATGGGGCCGAATGG
GACCTTGTAAGTTCAGATTAAATTTTCATTTTATCCTTTATATTAAGGGT
AAGTTTCTCAGGAAATCCTAAAGCGTTTCGATTTGCCTGGACCCTAACTC
CCTCCCCCGGGTGTATTAGACTTACATGATGACAGGGGTTGTCGCCCGGC
TTTCGACACTCGGTAAAAAGGAATAAAGATTTTATGAATTTCATCCCATA
TTTAGACTAATTTGACCAAATTTCGATGTTTTTAGGGGTAAAAAAATTAA
AATTATTCTACTTTTTCAAACCCTTAATGAGACTGAAATTTAATTTTCTG
ATTTTTCTAACCCTTACAGGGACTACCAGGTTCCAAAAAGCACAAAGCAC
AGTAAATACGAGTACGTTCAATCAGACCTTCGGGAAAGATGTGACCCAGA
GGGGTGCTTTAACGTCTGATGTCGACATCACCCGACATCTCACCGTAAAC
ACCTCCGCCACTATTTACTCCGCCCCCGGGCTAACCACCGTTTTCAAATT
TATCCAGCCTACTAAACTATTCCCTTTGTGATGATCTTTTGTGTTCTGTA
ATATAGAGTTTCAACTGGCTAGAATGAGCTTGTCTAAAGTCTAATATTAC
AAAATGTACAACAAGATATTCAACATTCTTTCGCAAAACTTGCAATAACA
TGAGTAATGAGTAAGATCTTTCTACATACATAGATTTATTAATATTTTGA
TAAGAATTTTTGCGAATCGACTTTAAAAAAAATATTTTCTCTGTTTTTGT
CTGAATACGTTTCTGCAAGAAATGGAATATTGCAATTTTCGGCTTGAAAG
CCGATTAGAAAGCTTTGATAGGCTCATTCTAAAACCATTAAAATTTAGGA
AATTTTGCAACGTGTGGAGTGTGCAATCCACACGTTGTTTTCGGGCGGCT
TCCCCGGTAATAGCTCTTATCGGAGTTTTTGATTCTTCTAAAAAAGCGAT
GCATTGTGGGATTGCTTCGGGAAAATTGCAATAAAAATCTCTTAGGAATT
CCTCGAGGGAATTCTATTGTAATACCCCCAAAACAATCCCTTGTGTATCA
CTTTTTTAGAAAAACCAAAAACTCCGATAAGGTTTATTGTCATTTGTCTT
TCAAATAGTTCATCCCTCTGGTGGAGAAGGGTCAGTTATTTTTTCCTCCT
TTTAGGCCTATTTGAATCTCTACATGAAAAAGCTCCTTGTGATATGGAGC
ACTCCCCACTGGGGAATGGGTCCTACTCCTTACGAAGTAGGAATTCCTCC
TTTTTCAAATTGGAACGCTTACCGTTGTCCAGACACCGCTGGTTCTGTGC
ACGCGAGACACAGATACCATGCTGCATAGTGGTGACACTCGAACTGTGCA
TATAGCTCGTCGCAGGCACAGAACGGGATGAGTGATACCACACACCCACA
TAAAACCCACACTCTTGTATCAGAGTAGTGGTACCCAAAAGCTCCTTGTG
GTAGTGCATAAAATTGAGACAGGGGTTAATATCATTGCGATGGAATTAAA
AATCTTTATTTATGAATGCTTTCTTTCTTGAGATTTGCTGACAGTTTCGT
TTTGTTTGTGCAAAACTAATTGAATTTATTTTGCTCTACAATTCTGATAC
CCTGTGTTTACAAGAAAATGATACCTTATTGATAGAAAGTTCGTTGCGAG
AAAAATCACCAAGCAACGAAATTTATTGCCAACGAAGATTGTCTACCGAT
AAGACAATCGACAGATCCGAAAATGCACGATCTATTTATTTATTTATTTT
TTTTTTTTTCATTTCAGCTGCTATTTCGATGGTGTGAATGGAGAACTCGC
AAACCTCTTTTTTACGACTGTCCCCTTGACTGTTATTTTGCTGACCAATA
TCATCTTATATCTTCTAACTTGGCGTCGCATAAAACAAGAAGAACCTAAA
TTTAAAGGCATCAATGGCCGCGAGGCTAGAATCGTACGCGCGTCACATCG
AGCGGCCCGCACAATGACTTTATTTGTAACAGCCTTTATAATACAATGGT
GGGCAATGTGTATTTACGGGATAGTACAGATGTTAGTTGAAGTGCCGATA
GAACTATTCCAATTCGTGACAACATTTTCGAACGTCGGTGGCATACTAAA
CGGAATTGTTTATTACATCATTAGACGGCGTTCCAGAGAAAAACATTCAG
AGGCTAGTTTAGAGCTATCGAAATCGGACGGTAGCAAAAAGTTTACGCGC
ATGACAAATTCGAATTCACCGACATTGGATGGTATCAGTAGTGGTCAGGA
AGAAGTTGAGGAATCATCCACTAAGCTTTGATTTGTTATGTCGGTACTAT
TGAGTTAAAATCCTGATGAACTTTGCAAGCAATAAGATGTGAAGGTCCAA
AGATTTGTGAGCATTCAGAATGACGGATTGAATCTAGTGCTTTTTACGAA
ACCTTTTTTACATTCAATCCGACGTTTG

Coding sequence (CDS) from alignment at scaffold_276:243225..246252-

>TCONS_00056488 ID=TCONS_00056488|Name=TCONS_00056488|organism=Clytia hemisphaerica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_276:243225..246252- (Clytia hemisphaerica)
CTGCTATTTCGATGGTGTGAATGGAGAACTCGCAAACCTCTTTTTTACGA
CTGTCCCCTTGACTGTTATTTTGCTGACCAATATCATCTTATATCTTCTA
ACTTGGCGTCGCATAAAACAAGAAGAACCTAAATTTAAAGGCATCAATGG
CCGCGAGGCTAGAATCGTACGCGCGTCACATCGAGCGGCCCGCACAATGA
CTTTATTTGTAACAGCCTTTATAATACAATGGTGGGCAATGTGTATTTAC
GGGATAGTACAGATGTTAGTTGAAGTGCCGATAGAACTATTCCAATTCGT
GACAACATTTTCGAACGTCGGTGGCATACTAAACGGAATTGTTTATTACA
TCATTAGACGGCGTTCCAGAGAAAAACATTCAGAGGCTAGTTTAGAGCTA
TCGAAATCGGACGGTAGCAAAAAGTTTACGCGCATGACAAATTCGAATTC
ACCGACATTGGATGGTATCAGTAGTGGTCAGGAAGAAGTTGAGGAATCAT
CCACTAAGCTTTGATTTGGTTTTGGTTTTGGCAATCTTGCGGTGAAAATG
CTAATCGTAAATACAAGAGGAAATAACCAATCCATCAGTACACAGATGGC
TATTATACCTACTAAGAAAGTACTGATTGACGGCTGGGATCTCCCCGTCT
ACGGGATCGAGCAAGGACAATTTGCTGCTATCCACATCCCAGCTTTAACG
TGTATATTTCTAAGTTTGATTGCCGCTATTTGCGTATTGGTATTTTCATT
TAAGACGAAAAGTTTTCGAACGTTTTTCATGTGGAATAAAAGCGAACGTT
TTGTTGTTTATCTGGCAATCTGTGATGGTCTGTTTAATATATGCCATTCC
TTGGATCATTTACATATCTTCATAACACATGATCACCCGTATCCCAAAAG
CCTTTGCGAGTTTTATGGATTTATGCTAGCTGAATTTATAACAGCCCAAA
ACCTTATGGTTAACGTTGTCTCCATTAATGCATTTGTTTTGATCTATTTT
CGAACCAATATGGATTTTGGTAAATGTGATTACAAATTGTTATTGTGGAC
CTTTGGACTTCCGTTTGTGGCGGCGATTGTAGCACTTTCCCTTGGCACCA
TGGGGCCGAATGGGACCTTCTGCTATTTCGATGGTGTGAATGGAGAACTC
GCAAACCTCTTTTTTACGACTGTCCCCTTGACTGTTATTTTGCTGACCAA
TATCATCTTATATCTTCTAACTTGGCGTCGCATAAAACAAGAAGAACCTA
AATTTAAAGGCATCAATGGCCGCGAGGCTAGAATCGTACGCGCGTCACAT
CGAGCGGCCCGCACAATGACTTTATTTGTAACAGCCTTTATAATACAATG
GTGGGCAATGTGTATTTACGGGATAGTACAGATGTTAGTTGAAGTGCCGA
TAGAACTATTCCAATTCGTGACAACATTTTCGAACGTCGGTGGCATACTA
AACGGAATTGTTTATTACATCATTAGACGGCGTTCCAGAGAAAAACATTC
AGAGGCTAGTTTAGAGCTATCGAAATCGGACGGTAGCAAAAAGTTTACGC
GCATGACAAATTCGAATTCACCGACATTGGATGGTATCAGTAGTGGTCAG
GAAGAAGTTGAGGAATCATCCACTAAGCTTTGATTTGGTTTTGGTTTTGG
CAATCTTGCGGTGAAAATGCTAATCGTAAATACAAGAGGAAATAACCAAT
CCATCAGTACACAGATGGCTATTATACCTACTAAGAAAGTACTGATTGAC
GGCTGGGATCTCCCCGTCTACGGGATCGAGCAAGGACAATTTGCTGCTAT
CCACATCCCAGCTTTAACGTGTATATTTCTAAGTTTGATTGCCGCTATTT
GCGTATTGGTATTTTCATTTAAGACGAAAAGTTTTCGAACGTTTTTCATG
TGGAATAAAAGCGAACGTTTTGTTGTTTATCTGGCAATCTGTGATGGTCT
GTTTAATATATGCCATTCCTTGGATCATTTACATATCTTCATAACACATG
ATCACCCGTATCCCAAAAGCCTTTGCGAGTTTTATGGATTTATGCTAGCT
GAATTTATAACAGCCCAAAACCTTATGGTTAACGTTGTCTCCATTAATGC
ATTTGTTTTGATCTATTTTCGAACCAATATGGATTTTGGTAAATGTGATT
ACAAATTGTTATTGTGGACCTTTGGACTTCCGTTTGTGGCGGCGATTGTA
GCACTTTCCCTTGGCACCATGGGGCCGAATGGGACCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035585XLOC_035585Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056488-proteinTCONS_00056488-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056488-exon-scaffold_276-1575043694:245647..246252TCONS_00056488-exon-scaffold_276-1575043694:245647..246252Clytia hemisphaericaexon
TCONS_00056488-exon-scaffold_276-1575043694:243225..243885TCONS_00056488-exon-scaffold_276-1575043694:243225..243885Clytia hemisphaericaexon
TCONS_00056488-exon-scaffold_276-1510915933:245647..246252TCONS_00056488-exon-scaffold_276-1510915933:245647..246252Clytia hemisphaericaexon
TCONS_00056488-exon-scaffold_276-1510915933:243225..243885TCONS_00056488-exon-scaffold_276-1510915933:243225..243885Clytia hemisphaericaexon
TCONS_00056488-exon-scaffold_276-1491911889:245647..246252TCONS_00056488-exon-scaffold_276-1491911889:245647..246252Clytia hemisphaericaexon
TCONS_00056488-exon-scaffold_276-1491911889:243225..243885TCONS_00056488-exon-scaffold_276-1491911889:243225..243885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:243225..246252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0335328	0.0326998	0	0.0742907	1.21287	0.821886	0.603565	1.11715	0.254317	1.08022	0.144748	0.357323	3.28386	3.51173	0.984969	2.30273	1.56009	1.90075	6.20784	5.88276	2.47208	3.78917	1.83993	2.6048	3.69093	3.43736	6.11511	4.45101	0.888053	0.530881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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