TCONS_00056490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056490
Unique NameTCONS_00056490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056490 ID=TCONS_00056490|Name=TCONS_00056490|organism=Clytia hemisphaerica|type=transcript|length=1691bp
tatttaaaaaagttttgcaaGAATCAAGAagaatccactttttgattttg
cagCATCATTGTGGCCTGATCATCCTTATAAATTCGATGCTTTCGAGTGT
ATCAATACGAACCATTTTCACCTCAACAATCTTTAGGGCTTGGTCGATTT
TTTCATCAAGTGCTGTTCCAGGAAATATGCCATCTGAAGAAATGGTACCC
AAAGAATTTAATAAAGCAACATTCGCCATGTCATGATTTTGGTTTCCCGA
GGCACAATTTGGTTGTGCGAGGGGAGTACTAAGAACCAAAGTTGGTTATA
CTGGTGGACGCAAAGTCAATCCTACATACCATTCACTTGGTGATCATACT
GAAACCATGCAAGTCGACTTCGATCCAACCCAAACAAACTATACAAACCT
TTTACAATTATTCTGGGAGAATCACGATGCAACTTCACGGAACAAAGCGC
AGTATATGTCGGCTATCTTTTTCCATGACGAGGAACAACGGGAACTGGCG
GAACAAACCATGTTGGAACATCAGAAAAAAGTTCCGAGACCGATCACGAC
GAAAATTTTACCTGCTGAAACTTTCTACGACGCGGAAGACTATCACCAGA
AATATTTATTACGGCGACACTGGAAAATCTTCCAATCGCTCAACCTGTCC
GATCCTCAAGTCATTACGTCACACGTGGCCACCCGCTTAAACGGTTACAT
TAACGGACATGGTCAAATGGCGGACCTGTTAAATGAGATTGGTGCATGGA
AATTGAATGAGAAACAAGAAGAAATGATACGCGATGCGGTGGCAAATGTA
AGATGTGTTGGTGGATCATGTAGTAGGTACTAATAATCTCTTCTACAAAC
AGATGGATAGTGCTGACTGTGCAAGTAGATCTTTAGATAACTATATTATA
TTGTTTCAAAATATGAGTCTTCAATAATTTTGCgcaattttcgaactttt
ctcTCATTTAGAATCATTTTACGATGATTATGTGAGTATTAAACTGAACG
CCCTCACTTTTTTTCACCTacgttttttttcaattagagCTTTAAAATTA
TTCTCCTCCGAAACTTGAGCTGCTTGCTAAAGTTCCATTTTGTTTGAGGA
CTTTTGCAATGTGGTATGGTCTTCGTTTTTCGCTTGCTGGTAATATGCGA
AGTAAATTTTGGCCTTAAAGCTCTtgaatcaattttctttttcaaatctt
ggactaaatctttttttttttatatgaaggTGTAAGAACGCTTTCATTAT
acatttggtttgtttttttgaaaattttcaaaaatgaaacaaaactgttt
taagattcataaaaatgttatttttctttaagtttGTAAATATAATGAGA
CTTTTATTTTATACTCCTGTCAAACATGAATatgacttcaaaatattttt
ttggtattATATCATGCACGCGCAAAATACCGCAAacttttttgccattt
tttatttcaattttttctatgtatgatgatttttcactaaaacatTATAT
CTTTTTATATGTTGTGAATAGATCTGATATagatacaattttttttggta
tctttgtagaaatgtggaataaaaatgtctaaAATTTATTTATGTTTAAC
ACTGTAAGGTATTTGTGTTTTGGACTTACcccggaggtcctttaaattac
cttattacacgaaaataAGTAGACATGTAAATAACAcgaaa
Run BLAST on NCBI

protein sequence of TCONS_00056490-protein

>TCONS_00056490-protein ID=TCONS_00056490-protein|Name=TCONS_00056490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MQVDFDPTQTNYTNLLQLFWENHDATSRNKAQYMSAIFFHDEEQRELAEQ
TMLEHQKKVPRPITTKILPAETFYDAEDYHQKYLLRRHWKIFQSLNLSDP
QVITSHVATRLNGYINGHGQMADLLNEIGAWKLNEKQEEMIRDAVANVRC
VGGSCSRY
Run BLAST on NCBI

transcript from alignment at scaffold_276:263851..280834-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056490 ID=TCONS_00056490|Name=TCONS_00056490|organism=Clytia hemisphaerica|type=transcript|length=16984bp|location=Sequence derived from alignment at scaffold_276:263851..280834- (Clytia hemisphaerica)
TATTTAAAAAAGTTTTGCAAGAATCAAGAAGAATCCACTTTTTGATTTTG
CAGCATCATTGTGGCCTGATCATCCTTATAAATTCGATGCTTTCGAGTGT
ATCAATACGAACCATTTTCACCTCAACAATCTTTAGGGCTTGGTCGATTT
TTTCATCAAGTGCTGTTCCAGGAAATATGCCATCTGAAGAAATGGTACCC
AAAGAATTTAAGTAAGTTTATTTTTATTTTTGTTGCATGTCAAGGACTAG
AATTGAGCAGTCTTCTTTCAGTCTTTAACAAATAGGAAAACCTTTTGTTT
AATAATTGAAATTTCAATATCAAAAGAATTATGAAATGAAAATATTTATT
ACACATGTTTAAATATTGGGCCCTTCCAGTTTTTATAGACCTTTTTTCAA
AGAGGACGTCCTGTTGAATAATTATGTAGTCCAGCCATAAACAATGATAG
AGCCATGCATAATTACTGTATCATGCATATTGTAATAATTATGCATGGTT
TTATCATTGTTTTTCTGCTGGACTACATAATTATTNNNNNNNNNNNNNNN
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NAAATAAATGTTTGAGACAATGTTGGAAAATGCCGCGCAAACCATTCAAC
AAGAAAGTTCAAATGTTTGAAGAACCATGCAGCCATGTTTGATGGTTTGC
TCCCAGCTTAAAGAAGACACCAGCCCCTCTTTCTTTTGGACTTTGACCCC
TCCCCTTTTCGACACAACTTTTATGATGGGCTGCCTGGTATCAAATGGAT
GTAGGTGACACCCTACTTGAAATAGAAGTACTTTAATACTTACATAATAA
AAATAAAGTCTGATGTCTCGAAAAATGTTGCACAACAACACCAAACAACT
TCCGAACTGTCAAAAATCGCAGCGCGCGCAAGTGGAGACCGGCCATAAGT
GATAAATAAGTGATGCAATCTTTGGTAAAATTGAATGTTGAATGTTAAAT
CGTCGGGAAAATTGCATCGTCAGCAAAACCAAAGGTTGCATAACGTATTG
GAATTAGCAAAATACACCTTTCCCGTAATTCAAATTTCTCAGAAATGGCC
CGGGAAAATGTGCGCTCCACCGTTGTGTAAAAATTGTTTGGGAGGTAAAA
AACGCGTTTTTGCCTGCGAGGGGTTAGGGAAAGTGGGTTTTTAGCTTCTA
ACTTTTGATAGCGATCTTCCTTTGGCAAAATATTTTCAGGGTGGTATAAT
ATCATGAATAGATTGAACATACTAAAATTTGAGGGGATTCTGTTCGACAG
AACTTAAGAAAAGCACAAAAAACCAACTTTCCCTAAGGGAACGCAGGCAA
AAACGGGTTTGTTTACCTCCAGAGACCAAACGATGGAGAGCATCAAAATA
ATGCGCGNGGAATTTCCGTAGCAAATTGCTTTCAAGAAAGTCCGAAATTA
AAATACAACTACGCGGCTCTGCTCGCAGCTCTGTTTGCAGCTCTACTCTA
CCATTTTTGTTTTGATTTAATTTTGTATTTTAAATGACCAGCCAGGTCTT
TCATTTGAGGTCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAATC
TCACGGTATGCATGGGGCTCTGAGTTCGATTCCGATGGGTGTCTAATTTT
TCAATTCTTCAATTTTCTTTTTTTAATTCTCTTTCTTTTATAATGAAGTT
CAATCAAACAAACTTGTAACTAGCTATAACTATATTACCTCCGCTCTCTG
TCTAAGGTTTAGATAAGTAAGTAAGTATTACAAAACCTCTGATTTTCAAA
AACTTGTTCGTGAAAACGGACCCTTTTCCTTTTCTTCTTTTCATCTGAAT
ATTGCTTCCTTAGCTCTACATTTTGATGACTTAACTACTCTTCTTTCTAA
ACTTAACTTCAATTTTGACGTAATGGCTATTACCGAGACCCGTCTTTTGA
AAGGCAAAAAACCTTCGTTTAACTTCAATCTTGAGAACTTTCATGTACCA
ATTCATACTCCTACGGAGGCTTCTGTTGGTNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNTGATTAGTCCAGGCTATAAGGCGG
TCTCCATCCTTTTTTATTTTGTGGATACCGTCTCATGTATTTTAAGTGTT
CAAATGGTAAATAAATAGTTACTTACTTAGTTACTTACTTATAAGCTATG
ATAGCACGAATAGCATCACTTAGAGCCAGTTTTTTTAAGAATGGGGCAGT
TTGGGGCAGTTCCAATAGTTTGAAACTTAGATTTTTTTCATTTTTGGATA
TGTTGTTAAGTACAATGAACTGAGTNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNGCTCATTTTCTGTTCAATCTTGAGCAAAAATTGCCTG
CCCTGCTCTTAAAAAAAACTGGCTCTTAATAAGAACGGGTATAGGCGTTT
GCGCCTGCGTTTGCTGACTGACAGTTTCACTTTCACTTTCAGCCAGCGAG
TGAGCGAGCAATTCTTTGTAATAGAATCATCAAATAAATTCTTTCAGAAT
CATTGAACTTCTCGTTTTATACTTTAAAGGCAGAATAATAATTGATTTCC
GGGTCAAAATGTTTGGCACTTGATCCAATCGTTTGCTTANNNNNNNNNNN
NATAATTGATTTCCGGGTCAAAATGTTTGGCACTTGATCCAATCGTTTTC
TTATCTTTCTTGCGTGGTCGTTATTTGAATTTCAGTATTCAATGCTTATA
AAATACAGTTGTTATAAGAGTATTAAACTCCTCACTAGGAGGGAACAGAT
CATAGATTCGAATTGAACGCTTAATTACTAATAGCAATTAACATTACATA
ACGCGTTGATATCTCTTCACTCTAATGAAAATGTGATATAAAATTAAAGT
GATGAGAGAATCACAAAAAAACACAAGAATTGAAAAATTGGACATCCATT
GGAATCGACGAACTTGGAGCCCCATGCATATGAGACAGACGATCTAACCG
CTCGAGCTAACCACGCTTTGAAAGTAGTGAGAGAAAGCATGAAAGAAAAA
GGAAAGAAAGAATCGAGAAAAAAATTAATTCCCGCTTTGATGTTATTATC
GAAACAAAAGGATCAGTCATGCCGAAATTCCTTTCCACACGTCAGTAATC
TACTTTTTATAAATAGAAAAACTAGATTGTAAGGAAGATTCTAAAAAAAA
ATAGCTGTTTTCTTAGACGACTATGTTTAAATGAAAAGAGGCAGCATTTT
TAAGTTTGACTGTTCAGTAGTAAACATGATATGTTTCAGAAGATATCAAT
TGAAATGAGATCAAAGTATTGTTAAAACAGATTCAAATCAAATTGAGTCC
AATTGAAAATCAAAGCAGACAGAAAATATTTTGCTTTGATTATATATTTA
NATTGAAAAACAAAGCGGACAGAAAATATTTTGCTTTGATTATATATTTA
ATGTTGTTCAAAGTTTATAGATTTAGAACATTAAAGTTTTGCTTCAATTA
TCAGTTTGACACAAAAAAAACAGATTTTCCAGACCAACTTAAGTAGCATT
TTAAAGCAGAATTGGAAAGTAATTTTAGTCGTTACTCTGTCTGATCTATT
TTATCACTAATGAAATAGATGGTTTATAAATAACTATTAATTTTTATTTA
GTAAAGCAACATTCGCCATGTCATGATTTTGGTTTCCCGAGGCACAATTT
GGTTGTGCGAGGGGAGTACTAAGAACCAAAGTTGGTTATACTGGTGGACG
CAAAGTCAATCCTACATACCATTCACTGTAAGTCATATTCTTTTTAATAG
TCGGTCAGATAGGTGAAACTTTCGTCTCCGGAGTTGGAGTACTCCTAAGG
TGGTTTTTTGGTATCCTTAGACATCCTAGTTATGGAAAAAGTTGGTCGAC
CAGATCAAATCGGTAGCTTAATATGATTTTTCAGACCCAAACGTTATAAT
CTCTTTCTGTATTTAAAGGTTTTGTTTTTAAATAAGTTGATATTATTTTC
GATTATTCAACTATTTTAGATTTATTCAAGCATATTGAATTACAAGCCTT
TTTATATAAATTAAGACAAATATTGAATATCTTAATAATACAAAAAAAAA
ACAACACTTTTCACCTCACACAAAATTCAATACAAGGCAAAAAGGGTTGG
GGGCGTTAACATTTCAACCAATAAACCAAACTATTCTCCACTTGTGGCAA
CTTTCCATTATGAATTATCTAAATCGTCCGTAAAGCATACATGCCTTAAA
TTTAAAGTAAAGACAACATGCTGAATTGAGATTTTAAATTAATGGCTAGT
GGTTGATCATATGGGAAAGCTTCTTTAAATGAGGAGATAGAAAATAAGTT
ATTCGATTGAGATTTCGTGGTACATTTTGTGGCTTTGGAATACTTTGGAG
CTGGTAATTTAATAATCCAGAAAGGGTTAGCTGCTAAAAGTCGATTATCA
TATTATCGAGGTCACCATAAAAACAAACTTTTTTCAAATCACAAATTTTC
TTGAAAATACATAGAAATTGTTATTAATTAAGGCTGGGAAAAGTCATGAT
AAATTTTAAAAAGAAATATTAAGATAAACATTAAAGTAAACATTATTTTT
ACAACTGATTCCTAAAGAGTCAGTCATTTTCTAGCTCAACTTGTTTCAAT
AAAAAAAGTTTATCAGCTTCGCAGAACATTTGTTTCAATCATCGCTGGCG
GGATAACCAAGATTTCCCCATGAGTGGTTCAAAATTCCCAATACATTCCA
CATTTCACATCGATTCTGATGGTACGTTAACATTCCTTGTTCAGAACGTG
TGAAACCTGCCCAAAAGTCAGTTGTTTTGCCTTGAAATTGTGTCATGAAA
TTTGAAAACAAGAAATCTTTATACATTCCTCGGAAAAGTTTCATCAATTT
TTCGTCCTCTTCAGGGAGCGTTTCTCCTTTATAGAATTTCAACCCAAACA
GAAGCACTGAATCCCATCCGTGATATGCAGTTTCTAAACCAAGACCGATT
TCTTTAGTGGGTGGTTGGCTCATAACATACCGTGATACTGTATAGCCTTT
AACTTTTGATAAATGATCTGCAACATAATTTGTTGTACACAGAACTAGCG
CGTCGCTTGTCATAACTTCGTAGACATATTTAGGTGTGATATTCTGAGGT
GGACTTTTCAAATCATTTTGGTATTGGTCTAAAAAATGAGGGTAATGTCC
TTTCTTAAAAGTATCCATCTGAGGCTCTAGTGCAGCTTGTAGGTCTGCCC
ACGTTGTGATGTTGGCATCTGGTTTCGGTTTGTGAGGAAACGGACCGGTT
TCTTGTGCACAGTTCCCGATCAAGAGCTCCACTTGAGTATTCTGGTGGAC
TGGAATTTGGTCTGGTGATTTTGTCACTACAACCGGATCCAGAATCTCAA
CAGGGTAGCCATTATATGGTTCATTAGTTGGCATTTTCCAATGATAAGGT
GTAACGGAAGTTCCTTTGAAGAGCGATAGAAAGTCATCAGCATCTATGTT
CTGCAAACATTCAACAATATTGTCTGGACTCTCTTTTTGACAATCAGCTT
TGTCAATAATACTACGATACTTCATATCAGCTACTTCATGAGTTGTCCGT
ATGTTCGGTGCTCCGGATTGCGGGCTTGCCTTCTGAAATAGTCCGTTTGC
CAGGGGTGAGCATAATAAACAGTAAACACCAGTACCGCCACCTGATTCAC
CATAAATCATAACGTTCTCAGAGTCTCCACCAAATTGTTTGATGTTACTT
TTAACCCATTTTAGTGTCTCAATCTGGTCCAGAATACCATAATTTCCATA
AGATTTGTTTGGTCCATTTTCAATCCATAACTCTTTCAAAGACATAAATC
CGAATACGTTCAACCGGTAGTTTATTGATACGGTTACTGCCTCCATATAA
GCGGAAAACTCCGTGTCCGGATGAAAAGCGAACATTTCGTTATATCCCCA
TAGCATTCCTCCTCCGTGTATCCATACAATTACTGGCAATTTAGAGCTAG
GATCCAGATTAGGGGTACGTACGGTCAATACCAGGCAGTCTTCGCTAGTA
TTAACGGACGGTGTAAAAGGATGGTCTTGCTTACACGCTACTACGTTTTT
GTTGTATTTCAAAACACCATCCCAACATTGGGCGGGATCGTCACTTAAAC
GAACTGGAGGGCGCCATCTGAGTTTTCCTACGGGTGGTTTTGCGTAAGGT
ATATTACGGAACTCGTAAACGTTTACAGAATCGTTATGCCACTTAACGTT
TTCCGTAAACCTCTTACCCTCTACCGGGCCGCATTCCGTATCTATGTTAA
CGTAATCCCGGTCGGCATCAGGGATTCGGTTCTGCGGAACGGCAAACGTA
GATGTTATGTGAACGCATAGAATCGTGAAAAGAAGTAATTTTCTTTGCAA
TTTGACTTTCATTTTCTTAGAGAGCTGAAAAGAAAGGAAAAATTACCATT
ACCCTTAGACTTCTTTGTCTTTTGCTTTGACATTCTCATGGGAGGCCATT
TCGAATTATGGAGAGTAAATGCATTTGTTTTGAATGTAAGATATGACATA
GAAAGCTTGAAGTAGATTTTCAATCCCAAAACAAGTCCCAATCTGAATTT
CAATTAGGGGGAAAATATACGAAAAACGAATTTAAATTTATGTAAGCTTA
CCTTAGTACTCCTCACACTATCGTCCCACGTTTCAACATCCTATACGAGC
TCTACTGCTATTTTGAATTCTGTTTTCATATACTCTATTGACCTTGTTTT
GTAATATGAACCTATGTTATTATTCTACATTGTAACCAATGTTTTTGCTC
AAGATAAGCAATTTTTGATACGCTATTTAGTATAAGAAACTTATTCATAA
ATCCTAAGCATTTTTTTTGCGAAATAAAATCTAATTTAAATCTAAATTCT
AATCTTCTATCTTCTTCTTCGATATCAGGTAGGCTATTTTATTCTCCTGG
ACTGGAACTTAGACTACTAAATTTTTCACGCATACATATTAACAATTTCT
TTTCCTCTGTTGTTCTTATCTTAATGGTTTCCATTTTAAATAAGTCGTCC
TCAAGTACTACAATTAACCTTTGATGTTTGATTCATTTGCACATTTTACT
GCTTAGCTCACCAGCTAAAGAACAAAGTATAATTTAGCACTGAACTTTGC
CCCTTTCATTAACTGTTTCATCAGTTTATATTTAACCCTCTCAATAGTCA
GATCTTTTCTTTCAGCAAATAACAATAAAAAACAAATTAAAAAGCTTGAT
TAGAAGAGCAAGAATGCTAGATATCCCTATAGCGTCAGCCCCCCTGCTAT
TTACACCCTCGAAAAAGCCAAAAATAGGTGGGGGTAAAGATGTTTCAAAT
ATTTAGGGGACCTAAATATACTTGGGGGGAGCTGAGCTGAAATTAGCCTA
GAAATCTAAGCTAGTTTGATTCAGTCACTAGAATAAATCTGATGGTCAGT
TGTGACTGGATAATAGTATAATAACAGTATTCCAAGGCAAACTTAAAATC
CGTAAATATTAAAAATCTTTAAAGCGCCGAAAATGCTATATTCAATGAAG
TATAAGCCCGAAGGGCTAGAATCGAATCTCCTTGGTAGGATTTGAAGCCA
ACGAATCCTACCAAAGTTGCGCGGCCTAACACGGTCCGCCTAGTTTTTAC
ACAAATGGCAGATTGGAACTAAAATTTACTGCTAAATTTTGAAAAAAATA
TCACATGAAAACAAAAGAATTGCTAGATCCAATCCGTCGTCAAAAATACG
ACGCATGTTTTAAGGCTTCACTTTTTCTTGCCTGAGAAAGGTTAGAGATT
CGATTCTAGCCCTTCGAGCTTATATTTCAATGGCTATATTGCCATTAGCC
GTGTGTCCTAGCCTTGTGAATACGGGCTTAATTAACTAGGCTAAGCTGAA
ATCTCATCATTTAACGTGGGAGCTGAATACTTCATCTTCATGGTTGGCTT
ACAATACAATTACTCAAATTAAAGCTCATGAAGCCGAAAAATTTTCGACT
GCGGCCCAATGTTTTTATTTAAACCCACCTTGCTCCTCTTTAAAGGATTT
AAAAAATTTTAATTTAACCCATGCTAAAGTTTTCAAAAAAAAAAGTCAAG
TATTAGCTCAAGAGACAGAGGTGCAAAATATCATCCAAATTGGACCCTTT
TTTTGGCCACCAGGCAACCCAAAAGTTTTTGCCTTATTTTTGAGAAAAAT
ATCGATCATCTATCGATTTAAATCGGTGACCGTCTGGTCAATTATATATC
TCTAATCAATTCTTTCTTTTTTTCGCTATATAGTGGTGATCATACTGAAA
CCATGCAAGTCGACTTCGATCCAACCCAAACAAACTATACAAACCTTTTA
CAATTATTCTGGGAGAATCACGATGCAACTTCACGGAACAAAGCGCAGTA
TATGTCGGCTATCTTTTTCCATGACGAGGAACAACGGGAACTGGCGGAAC
AAACCATGTTGGAACATCAGAAAAAAGTTCCGAGACCGATCACGACGAAA
ATTTTACCTGCTGAAACTTTCTACGACGCGGAAGAGTAAGTGACTCGAGA
TTCTGATTTTGTTTTTGTTTTTGTAAGGAAATCAAAAGGGTTTTAAGGCT
GATTGATTCCGCCTTTTGATCAAATTATACCTTCTATTTCCTCTATAAAG
AAAAGACAAAAATCCTGCACGAAAATGTTCTTTAAAATTTGAATTTTAAC
TTTCATTAAATTTCCGTAAATTTTAGACTCGCTAGCCATGAAACTGAACC
CCCTGATATTATAATAAATTTTTCAGATCCCTTCTTTGAGGGCCCTGAAA
GATTTTCTTTGCAACTTTACTACAATCGGTGCCGAAATATTTGGCACAAA
AAGGGAATACCCTCAAAACTTTAAAACTACAAGTGAATTTTAAGTGCTTT
GAAGTAAAGTTTGGAAGTAGAGTTTTAACTCTTGGCATAAGACTTAGGAC
CTTAGGATCTCAGGATCTAAAAGCTCAAAAATGTTCCAATAAGGCTGAGA
AAATAGCCTGGAAGCTACTTAACCCCTCCCAAATCGAAAAATCCAATGAA
GCAAAATGGAAGTACTGAAACTGCAATTCTCGCCCAACTTTTAAATTCTA
AAAAACGTTAAAATACCCAAAATTGCCAATATATTTCAGCGCTGATTGTA
GTCCTGTTCAAATACTCAATTCAGTTGCTCCTTAAGTTTTCAGCACTCTC
TTCATTCTTTCTTCCAGCTATCACCAGAAATATTTATTACGGCGACACTG
GAAAATCTTCCAATCGCTCAACCTGTCCGATCCTCAAGTCATTACGTCAC
ACGTGGCCACCCGCTTAAACGGTTACATTAACGGACATGGTCAAATGGCG
GACCTGTTAAATGAGATTGGTGCATGGAAATTGAATGAGAAACAAGAAGA
AATGATACGCGATGCGGTGGCAAATGTAAGATGTGTTGGTGGATCATGTA
GTAGGTAAAAAGAATTTTGCTTTGCTTTACTTATATATTATTTTAATTAT
TTTTGTAAATACAGTCGATCAAGGTTATACTGAGCTATCTGCCAAGGGTT
CGATAACAAAATGTCGAAGAATGCTGGCTTTATATATGTCTTAACTGGCG
AGGATCACTTAGTATATAGCATTCGCAGATCTTGACTCGAAATATGCTTT
AAATTATATTGTCGTTCTTAAGCTTTTGGTTTAAGATTTAGCTTTCAGCC
TGTGAGGATTTAAGGTTATGCTTATAAAAAGAAAAAGCCTGTGCTTTGTA
TTTCATTTTCGCATTATAGGTACTAATAATCTCTTCTACAAACAGATGGA
TAGTGCTGACTGTGCAAGTAGATCTTTAGATAACTATATTATATTGTTTC
AAAATATGAGTCTTCAATAATTTTGCGCAATTTTCGAACTTTTCTCTCAT
TTAGAATCATTTTACGATGATTATGTGAGTATTAAACTGAACGCCCTCAC
TTTTTTTCACCTACGTTTTTTTTCAATTAGAGCTTTAAAATTATTCTCCT
CCGAAACTTGAGCTGCTTGCTAAAGTTCCATTTTGTTTGAGGACTTTTGC
AATGTGGTATGGTCTTCGTTTTTCGCTTGCTGGTAATATGCGAAGTAAAT
TTTGGCCTTAAAGCTCTTGAATCAATTTTCTTTTTCAAATCTTGGACTAA
ATCTTTTTTTTTTTATATGAAGGTGTAAGAACGCTTTCATTATACATTTG
GTTTGTTTTTTTGAAAATTTTCAAAAATGAAACAAAACTGTTTTAAGATT
CATAAAAATGTTATTTTTCTTTAAGTTTGTAAATATAATGAGACTTTTAT
TTTATACTCCTGTCAAACATGAATATGACTTCAAAATATTTTTTTGGTAT
TATATCATGCACGCGCAAAATACCGCAAACTTTTTTGCCATTTTTTATTT
CAATTTTTTCTATGTATGATGATTTTTCACTAAAACATTATATCTTTTTA
TATGTTGTGAATAGATCTGATATAGATACAATTTTTTTTGGTATCTTTGT
AGAAATGTGGAATAAAAATGTCTAAAATTTATTTATGTTTAACACTGTAA
GGTATTTGTGTTTTGGACTTACCCCGGAGGTCCTTTAAATTACCTTATTA
CACGAAAATAAGTAGACATGTAAATAACACGAAA

Coding sequence (CDS) from alignment at scaffold_276:263851..280834-

>TCONS_00056490 ID=TCONS_00056490|Name=TCONS_00056490|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_276:263851..280834- (Clytia hemisphaerica)
GTACTAACTATCACCAGAAATATTTATTACGGCGACACTGGAAAATCTTC
CAATCGCTCAACCTGTCCGATCCTCAAGTCATTACGTCACACGTGGCCAC
CCGCTTAAACGGTTACATTAACGGACATGGTCAAATGGCGGACCTGTTAA
ATGAGATTGGTGCATGGAAATTGAATGAGAAACAAGAAGAAATGATACGC
GATGCGGTGGCAAATGTAAGATGTGTTGGTGGATCATGTAGTAGATGCAA
GTCGACTTCGATCCAACCCAAACAAACTATACAAACCTTTTACAATTATT
CTGGGAGAATCACGATGCAACTTCACGGAACAAAGCGCAGTATATGTCGG
CTATCTTTTTCCATGACGAGGAACAACGGGAACTGGCGGAACAAACCATG
TTGGAACATCAGAAAAAAGTTCCGAGACCGATCACGACGAAAATTTTACC
TGCTGAAACTTTCTACGACGCGGAAGAGTACTAACTATCACCAGAAATAT
TTATTACGGCGACACTGGAAAATCTTCCAATCGCTCAACCTGTCCGATCC
TCAAGTCATTACGTCACACGTGGCCACCCGCTTAAACGGTTACATTAACG
GACATGGTCAAATGGCGGACCTGTTAAATGAGATTGGTGCATGGAAATTG
AATGAGAAACAAGAAGAAATGATACGCGATGCGGTGGCAAATGTAAGATG
TGTTGGTGGATCATGTAGTAGATGCAAGTCGACTTCGATCCAACCCAAAC
AAACTATACAAACCTTTTACAATTATTCTGGGAGAATCACGATGCAACTT
CACGGAACAAAGCGCAGTATATGTCGGCTATCTTTTTCCATGACGAGGAA
CAACGGGAACTGGCGGAACAAACCATGTTGGAACATCAGAAAAAAGTTCC
GAGACCGATCACGACGAAAATTTTACCTGCTGAAACTTTCTACGACGCGG
AAGAGTACTAACTATCACCAGAAATATTTATTACGGCGACACTGGAAAAT
CTTCCAATCGCTCAACCTGTCCGATCCTCAAGTCATTACGTCACACGTGG
CCACCCGCTTAAACGGTTACATTAACGGACATGGTCAAATGGCGGACCTG
TTAAATGAGATTGGTGCATGGAAATTGAATGAGAAACAAGAAGAAATGAT
ACGCGATGCGGTGGCAAATGTAAGATGTGTTGGTGGATCATGTAGTAGAT
GCAAGTCGACTTCGATCCAACCCAAACAAACTATACAAACCTTTTACAAT
TATTCTGGGAGAATCACGATGCAACTTCACGGAACAAAGCGCAGTATATG
TCGGCTATCTTTTTCCATGACGAGGAACAACGGGAACTGGCGGAACAAAC
CATGTTGGAACATCAGAAAAAAGTTCCGAGACCGATCACGACGAAAATTT
TACCTGCTGAAACTTTCTACGACGCGGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035587XLOC_035587Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056490-proteinTCONS_00056490-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056490-exon-scaffold_276-1575043694:280624..280834TCONS_00056490-exon-scaffold_276-1575043694:280624..280834Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1575043694:270708..270833TCONS_00056490-exon-scaffold_276-1575043694:270708..270833Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1575043694:265950..266201TCONS_00056490-exon-scaffold_276-1575043694:265950..266201Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1575043694:265031..265267TCONS_00056490-exon-scaffold_276-1575043694:265031..265267Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1575043694:263851..264715TCONS_00056490-exon-scaffold_276-1575043694:263851..264715Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1510915933:280624..280834TCONS_00056490-exon-scaffold_276-1510915933:280624..280834Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1510915933:270708..270833TCONS_00056490-exon-scaffold_276-1510915933:270708..270833Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1510915933:265950..266201TCONS_00056490-exon-scaffold_276-1510915933:265950..266201Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1510915933:265031..265267TCONS_00056490-exon-scaffold_276-1510915933:265031..265267Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1510915933:263851..264715TCONS_00056490-exon-scaffold_276-1510915933:263851..264715Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1491911889:280624..280834TCONS_00056490-exon-scaffold_276-1491911889:280624..280834Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1491911889:270708..270833TCONS_00056490-exon-scaffold_276-1491911889:270708..270833Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1491911889:265950..266201TCONS_00056490-exon-scaffold_276-1491911889:265950..266201Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1491911889:265031..265267TCONS_00056490-exon-scaffold_276-1491911889:265031..265267Clytia hemisphaericaexon
TCONS_00056490-exon-scaffold_276-1491911889:263851..264715TCONS_00056490-exon-scaffold_276-1491911889:263851..264715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:263851..280834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.2578	56.8041	43.0741	36.0691	11.2122	9.73672	14.4868	16.1145	20.8836	15.866	18.7029	21.4379	22.9345	24.414	18.2503	19.1719	23.008	28.761	17.4257	16.4362	32.9291	33.1985	26.4199	31.404	26.8307	27.5708	18.868	16.5394	24.0668	24.2083
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002569Met_Sox_Rdtase_MsrA
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0008113peptide-methionine (S)-S-oxide reductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
Blast
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BLAST of TCONS_00056490 vs. Swiss-Prot (Human)
Match: MSRA (Mitochondrial peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.195e-23
Identity = 59/156 (37.82%), Postives = 82/156 (52.56%), Query Frame = 3 
Query:  189 EMVPKEFNKATFAMS*FWFPEAQFGCARGVLRTKVGYTGGRKVNPTYHSLGD----HTETMQVDFDPTQTNYTNLLQLFWENHDAT------SRNKAQYMSAIFFHDEEQRELAEQTMLEHQKKVPR----PITTKILPAETFYDAEDYHQKYLLR 614
            E  P+    A F M  FW  E +F   +GV  T+VG+ GG   NPTY  +      H E ++V + P   ++  LL++FWENHD T      + +  QY SAI+    +Q E A  +   +QK +      PITT I   +TFY AEDYHQ+YL +
Sbjct:   59 EPFPEGTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSK 214
The following BLAST results are available for this feature:
BLAST of TCONS_00056490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSRA3.195e-2337.82Mitochondrial peptide methionine sulfoxide reducta... [more]
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