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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056496 ID=TCONS_00056496|Name=TCONS_00056496|organism=Clytia hemisphaerica|type=transcript|length=1388bp
TATANCCGCACCCGGTATTCTAATGAAGAACTACAAGTTGCCCTATCAAA
ATGTAGAGAAGGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCC
CTAAAAGCACACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTC
CTTAGACCTGGTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGCT
AGTCAATTGGATTCTCAAGATGAACGAGGATGGATTCAAAGTCCAAGAAA
AGCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAATCAGAAGGTGTC
AATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGCTTGGTATAAAAA
CTTCTTAAAACGTTACCCAGCAGCACAACACAATCTGAGTGTCAATCATC
AAAAAGCAGAATACTCAATTGAAATGTTGCAGGCTTGGTATGACGAAACT
GTCGATACTGAAGTTCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACC
TAAACAACCAGAACCTACTACACCAAATCAAATCAGGTCAGTCCTTGATC
ATATAGAGCAGACTATTGGTGAAGAGAAATTAAATTATTACAGACAATGG
AAAGAAAATGGTGAACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTA
CGCTCTTGCAATGGATCTAGATCGTATTCAtaattccaataaaaacaaaa
ggaaaaggAAATCGGAACAGCCGAGGGTTAATGGAAACTATGTACATCAA
CATCATCATTTAGAGAACTCAAAAGTGGAACATCATCCATTGGAAAATGA
TTTGATAGATCTGAACTCAACAACAACTACCGCTCCAAATGTTGAATTCA
CTGaaaataaagacaatagaaCTGTTGAAAATAACTTACCGCAGTCACAT
TATAATGGAGCATATGTGagcaatgaaagtgaaagtgttcCACCAGATGA
TCAACTTTTGGTAGGTTCAAAGGAAACTAATTCAATGTCTACAGAAGATC
ATACAAATTTTATAAAGCCCCATCGAAGAAGAACTATGATGCTATCGTAT
AGTTCAAAATGATAATTTATTGCTAATTCTTTGTTATCACTATTATCCTC
TTGCTTCATTCAACTTCCCCCGAGCAAAGATTACTAAGTAGTTTTTGaaa
taacaaaaacaagcaaagaaaatcTTCCTGCTTTTGCCTACCGTGATATA
TccacaattttttatttcagaaaaccTGCTAAACTTAATCCTGAAAAGAC
CGTAAAAATCCTTTCAAATTCAATACCTGTTTTTACCTGAATTTATTTAC
ATatgagaatttttatttttttgtatattgATATTCAAAGAGCTTGTGTG
TAGattccaaatatatttttctattcaaatttttatca Run BLAST on NCBI transcript from alignment at scaffold_276:344732..346764- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056496 ID=TCONS_00056496|Name=TCONS_00056496|organism=Clytia hemisphaerica|type=transcript|length=2033bp|location=Sequence derived from alignment at scaffold_276:344732..346764- (Clytia hemisphaerica)
TATANCCGCACCCGGTATTCTAATGAAGAACTACAAGTTGCCCTATCAAA
ATGTAGAGAAGGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCC
CTAAAAGCACACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTC
CTTAGACCTGGTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGTA
CTTTATATCTTGCAAACCACTTTAGCTCAAACATAATACCTTCCTTTTAA
AGGAACTGGTATAAAATATTTATATGTTGACCTGTATAAGCCTGAGAATA
TGTCTCACTATTATTATCAATTTTTTTTACCAGAATTGTAGGCCATTAAA
GAATTTGAAGTGGTTTAAAAGTTGACGATGATGATTCTTGATTAGTTGCT
TGATTTTATCTCACAGGATGCAACTTTAAAATTGTTTTTATTTTGTTAAC
CTTTCCAGGCTAGTCAATTGGATTCTCAAGATGAACGAGGATGGATTCAA
AGTCCAAGAAAAGCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAAT
CAGAAGGTGTCAATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGCT
TGGTATAAAAACTTCTTAAAACGTTACCCAGCAGCACAACACAATCTGAG
TGTCAATCATCAAAAAGCAGAATACTCAATTGAAATGGTATGGTTTTATT
TATCAGAGAAGTAATTTTAAAGGAAAATTTGATGATCCATAAAATCATAA
ATTTGACTTTTGGGAAAATCCAGGAAAATCTAGATGATTCTAATCTGTTG
ATTAATCAGGGTTAAATTTGACCTTTAAAAATCTAGATCAGAACTTTTTC
CTATTATTACAAGGTGTCCAGTTCATTCCTCAAACTTTGAATATTAGTAT
AACTTTCAATATTCTTTAAGACTTCTCTGGCAAAAAGAAAGTGATAATAA
ATATAGAGAGAAAAATATATATTACAAGTTTGTTTTAAATTTAAAAAGTT
GTTATTGACTCTCCAAAATTAAATAATATAAGCTACTAAAATCGCTTACC
TCTAACGAATTAACTTTTTAGTTGCAGGCTTGGTATGACGAAACTGTCGA
TACTGAAGTTCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAAC
AACCAGAACCTACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATA
GAGCAGACTATTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGA
AAATGGTGAACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTC
TTGCAATGGATCTAGATCGTATTCATAATTCCAATAAAAACAAAAGGAAA
AGGAAATCGGAACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCA
TCATTTAGAGAACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGA
TAGATCTGAACTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGAA
AATAAAGACAATAGAACTGTTGAAAATAACTTACCGCAGTCACATTATAA
TGGAGCATATGTGAGCAATGAAAGTGAAAGTGTTCCACCAGATGATCAAC
TTTTGGTAGGTTCAAAGGAAACTAATTCAATGTCTACAGAAGATCATACA
AATTTTATAAAGCCCCATCGAAGAAGAACTATGATGCTATCGTATAGTTC
AAAATGATAATTTATTGCTAATTCTTTGTTATCACTATTATCCTCTTGCT
TCATTCAACTTCCCCCGAGCAAAGATTACTAAGTAGTTTTTGAAATAACA
AAAACAAGCAAAGAAAATCTTCCTGCTTTTGCCTACCGTGATATATCCAC
AATTTTTTATTTCAGAAAACCTGCTAAACTTAATCCTGAAAAGACCGTAA
AAATCCTTTCAAATTCAATACCTGTTTTTACCTGAATTTATTTACATATG
AGAATTTTTATTTTTTTGTATATTGATATTCAAAGAGCTTGTGTGTAGAT
TCCAAATATATTTTTCTATTCAAATTTTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056496-exon-scaffold_276-1575043694:346568..346764 | TCONS_00056496-exon-scaffold_276-1575043694:346568..346764 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1575043694:346078..346306 | TCONS_00056496-exon-scaffold_276-1575043694:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1575043694:344732..345693 | TCONS_00056496-exon-scaffold_276-1575043694:344732..345693 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1510915933:346568..346764 | TCONS_00056496-exon-scaffold_276-1510915933:346568..346764 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1510915933:346078..346306 | TCONS_00056496-exon-scaffold_276-1510915933:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1510915933:344732..345693 | TCONS_00056496-exon-scaffold_276-1510915933:344732..345693 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1491911889:346568..346764 | TCONS_00056496-exon-scaffold_276-1491911889:346568..346764 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1491911889:346078..346306 | TCONS_00056496-exon-scaffold_276-1491911889:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056496-exon-scaffold_276-1491911889:344732..345693 | TCONS_00056496-exon-scaffold_276-1491911889:344732..345693 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:344732..346764 - |
Blast
The following BLAST results are available for this feature:
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