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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056497 ID=TCONS_00056497|Name=TCONS_00056497|organism=Clytia hemisphaerica|type=transcript|length=2024bp
AATTCCTTTTGTTTGTATAGATAAATTTATCCAGAAATGGTAGATAAATA
TAATCAcaatcttgaatttcttgaatATAATGATGAAAGACACCATCAGC
ACAACAAAGACCCAGTTCTGGAACAGCTTCCTGAGGAACTCAATATAAAA
TCAACAAGAAAAGATCATGGACTGTATCTCAACACATctgaaaaagaaga
acattATCCATCTGAGAGGGAAAACCACGTTGAGTTTCATCCTAGAAGAT
ACACTGAAGAAGATATCAGATATTCTGAACATGATCTAGCTAACAAAAAT
CATCCCTATAGAAAGGAAAATTATGAGGAACATATCTCTATATCAGCCTT
TGTAGGTTTGCAAAAGGAAAGCTTGACAAAAGATAACCACGCAAAGATCT
TTGAAGATGATCAGAGTAATAAAATTAACGGATACTCATTTAAAGATGAG
CACTCAGCAAATTGTCTCTCCGGTTTGGAACATAACTCTAAATTGaattt
atctttaaataataataatagtgcTGATAAGTCTCATGACCaacccattg
aaaataatcttGACAGCGCTGTTCACACTCCACTGGAGTTTCCTACAATT
ACAAATGGTCCTAGACCTAAAAAAGCTGCTCCTAAAAAGAGATATACCCG
CACCCGATATTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAG
AAGGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGC
ACACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACC
TGGTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGCTAGTCAATT
GGATTCTCAAGATGAACGAGGATGGATTCAAAGTCCAAGAAAAGCAAATC
ATAGAAGCCGTGAAATTGTTTCATGACAAATCAGAAGGTGTCAATGCAAA
TGATAATAGTCACAGTAAACCTGGGAAGGCTTGGTATAAAAACTTCTTAA
AACGTTACCCAGCAGCACAACACAATCTGAGTGTCAATCATCAAAAAGCA
GAATACTCAATTGAAATGGCTTGGTATGACGAAACTGTCGATACTGAAGT
TCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAACAACCAGAAC
CTACTACACCAAATCAAATCAGGTCAGTCCTTGATCATATAGAGCAGACT
ATTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAGAAAATGGTGA
ACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCTCTTGCAATGG
ATCTAGATCGTATTCAtaattccaataaaaacaaaaggaaaaggAAATCG
GAACAGCCGAGGGTTAATGGAAACTATGTACATCAACATCATCATTTAGA
GAACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTGATAGATCTGA
ACTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGaaaataaagac
aatagaaCTGTTGAAAATAACTTACCGCAGTCACATTATAATGGAGCATA
TGTGagcaatgaaagtgaaagtgttcCACCAGATGATCAACTTTTGGTAG
GTTCAAAGGAAACTAATTCAATGTCTACAGAAGATCATACAAATTTTATA
AAGCCCCATCGAAGAAGAACTATGATGCTATCGTATAGTTCAAAATGATA
ATTTATTGCTAATTCTTTGTTATCACTATTATCCTCTTGCTTCATTCAAC
TTCCCCCGAGCAAAGATTACTAAGTAGTTTTTGaaataacaaaaacaagc
aaagaaaatcTTCCTGCTTTTGCCTACCGTGATATATccacaatttttta
tttcagaaaaccTGCTAAACTTAATCCTGAAAAGACCGTAAAAATCCTTT
CAAATTCAATACCTGTTTTTACCTGAATTTATTTACATatgagaattttt
atttttttgtatattgATATTCAAAGAGCTTGTGTGTAGattccaaatat
atttttctattcaaatttttatca Run BLAST on NCBI transcript from alignment at scaffold_276:344732..347665- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056497 ID=TCONS_00056497|Name=TCONS_00056497|organism=Clytia hemisphaerica|type=transcript|length=2934bp|location=Sequence derived from alignment at scaffold_276:344732..347665- (Clytia hemisphaerica)
AATTCCTTTTGTTTGTATAGATAAATTTATCCAGAAATGGTAGATAAATA
TAATCACAATCTTGAATTTCTTGAATATAATGATGAAAGACACCATCAGC
ACAACAAAGACCCAGTTCTGGAACAGCTTCCTGAGGAACTCAATATAAAA
TCAACAAGAAAAGATCATGGACTGTATCTCAACACATCTGAAAAAGAAGA
ACATTATCCATCTGAGAGGGAAAACCACGTTGAGTTTCATCCTAGAAGAT
ACACTGAAGAAGATATCAGATATTCTGAACATGATCTAGCTAACAAAAAT
CATCCCTATAGAAAGGAAAATTATGAGGAACATATCTCTATATCAGCCTT
TGTAGGTTTGCAAAAGGAAAGCTTGACAAAAGATAACCACGCAAAGATCT
TTGAAGATGATCAGAGTAATAAAATTAACGGATACTCATTTAAAGATGAG
CACTCAGCAAATTGTCTCTCCGGTTTGGAACATAACTCTAAATTGAATTT
ATCTTTAAATAATAATAATAGTGCTGATAAGTCTCATGACCAACCCATTG
AAAATAATCTTGACAGCGCTGTTCACACTCCACTGGAGTTTCCTACAATT
ACAAATGGTCCTAGACCTAAAAAAGCTGCTCCTAAAAAGAGATATACCCG
CACCCGATATTCTAATGAAGAACTACAAGTTGCCCTATCAAAATGTAGAG
AAGGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATCCCTAAAAGC
ACACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGTCCTTAGACC
TGGTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGTATTTTATAT
CTTGCAAACAACTTTAGCTCAAACATAATACCTTCCATTTAAAGGAACTG
GTATANCCGCACCCGGTATTCTAATGAAGAACTACAAGTTGCCCTATCAA
AATGTAGAGAAGGTCTCAGCATTAGAGAGTGTTCAAAGAAATATGGTATC
CCTAAAAGCACACTGTGGGATAAATTGTCTTGTCGTACACCAGCAACTGT
CCTTAGACCTGGTAGATCATTCAAAGTTTCAGATGCAGTAGAGAACAGGT
ACTTTATATCTTGCAAACCACTTTAGCTCAAACATAATACCTTCCTTTTA
AAGGAACTGGTATAAAATATTTATATGTTGACCTGTATAAGCCTGAGAAT
ATGTCTCACTATTATTATCAATTTTTTTTACCAGAATTGTAGGCCATTAA
AGAATTTGAAGTGGTTTAAAAGTTGACGATGATGATTCTTGATTAGTTGC
TTGATTTTATCTCACAGGATGCAACTTTAAAATTGTTTTTATTTTGTTAA
CCTTTCCAGGCTAGTCAATTGGATTCTCAAGATGAACGAGGATGGATTCA
AAGTCCAAGAAAAGCAAATCATAGAAGCCGTGAAATTGTTTCATGACAAA
TCAGAAGGTGTCAATGCAAATGATAATAGTCACAGTAAACCTGGGAAGGC
TTGGTATAAAAACTTCTTAAAACGTTACCCAGCAGCACAACACAATCTGA
GTGTCAATCATCAAAAAGCAGAATACTCAATTGAAATGGTATGGTTTTAT
TTATCAGAGAAGTAATTTTAAAGGAAAATTTGATGATCCATAAAATCATA
AATTTGACTTTTGGGAAAATCCAGGAAAATCTAGATGATTCTAATCTGTT
GATTAATCAGGGTTAAATTTGACCTTTAAAAATCTAGATCAGAACTTTTT
CCTATTATTACAAGGTGTCCAGTTCATTCCTCAAACTTTGAATATTAGTA
TAACTTTCAATATTCTTTAAGACTTCTCTGGCAAAAAGAAAGTGATAATA
AATATAGAGAGAAAAATATATATTACAAGTTTGTTTTAAATTTAAAAAGT
TGTTATTGACTCTCCAAAATTAAATAATATAAGCTACTAAAATCGCTTAC
CTCTAACGAATTAACTTTTTAGTTGCAGGCTTGGTATGACGAAACTGTCG
ATACTGAAGTTCCTGTTTTAGTAGAGAGTGTTGAATCTGTACAACCTAAA
CAACCAGAACCTACTACACCAAATCAAATCAGGTCAGTCCTTGATCATAT
AGAGCAGACTATTGGTGAAGAGAAATTAAATTATTACAGACAATGGAAAG
AAAATGGTGAACTTTCAAAGAAAGATCCTTTATACACTGCTTGGTACGCT
CTTGCAATGGATCTAGATCGTATTCATAATTCCAATAAAAACAAAAGGAA
AAGGAAATCGGAACAGCCGAGGGTTAATGGAAACTATGTACATCAACATC
ATCATTTAGAGAACTCAAAAGTGGAACATCATCCATTGGAAAATGATTTG
ATAGATCTGAACTCAACAACAACTACCGCTCCAAATGTTGAATTCACTGA
AAATAAAGACAATAGAACTGTTGAAAATAACTTACCGCAGTCACATTATA
ATGGAGCATATGTGAGCAATGAAAGTGAAAGTGTTCCACCAGATGATCAA
CTTTTGGTAGGTTCAAAGGAAACTAATTCAATGTCTACAGAAGATCATAC
AAATTTTATAAAGCCCCATCGAAGAAGAACTATGATGCTATCGTATAGTT
CAAAATGATAATTTATTGCTAATTCTTTGTTATCACTATTATCCTCTTGC
TTCATTCAACTTCCCCCGAGCAAAGATTACTAAGTAGTTTTTGAAATAAC
AAAAACAAGCAAAGAAAATCTTCCTGCTTTTGCCTACCGTGATATATCCA
CAATTTTTTATTTCAGAAAACCTGCTAAACTTAATCCTGAAAAGACCGTA
AAAATCCTTTCAAATTCAATACCTGTTTTTACCTGAATTTATTTACATAT
GAGAATTTTTATTTTTTTGTATATTGATATTCAAAGAGCTTGTGTGTAGA
TTCCAAATATATTTTTCTATTCAAATTTTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056497-exon-scaffold_276-1575043694:346827..347665 | TCONS_00056497-exon-scaffold_276-1575043694:346827..347665 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1575043694:346078..346306 | TCONS_00056497-exon-scaffold_276-1575043694:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1575043694:344732..345687 | TCONS_00056497-exon-scaffold_276-1575043694:344732..345687 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1510915933:346827..347665 | TCONS_00056497-exon-scaffold_276-1510915933:346827..347665 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1510915933:346078..346306 | TCONS_00056497-exon-scaffold_276-1510915933:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1510915933:344732..345687 | TCONS_00056497-exon-scaffold_276-1510915933:344732..345687 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1491911889:346827..347665 | TCONS_00056497-exon-scaffold_276-1491911889:346827..347665 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1491911889:346078..346306 | TCONS_00056497-exon-scaffold_276-1491911889:346078..346306 | Clytia hemisphaerica | exon |
| TCONS_00056497-exon-scaffold_276-1491911889:344732..345687 | TCONS_00056497-exon-scaffold_276-1491911889:344732..345687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:344732..347665 - |
Blast
The following BLAST results are available for this feature:
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