TCONS_00056500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056500
Unique NameTCONS_00056500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056500 ID=TCONS_00056500|Name=TCONS_00056500|organism=Clytia hemisphaerica|type=transcript|length=971bp
CTTGGATCGTTGTCAGTTATGCTTTCCTAAGGCGAGACGTTTGAAGCCAT
ACGAAGGAGATTCGAAGTTTTGTCAACTAGAACATCTTTTCATTATGCGT
AGTACCACCTTAAAAATGCTGGTGTTTCGCTGTGCCCTGTCAAGCTGTGG
TATTCAATATTGCAACCACGCATTGTTTCTAAGCGAAGACAAAGaagttt
tttgacaatttttttgacgACGAATAAAATCTATTTGGAAATCTACTAAT
CAAGAGACAGGAGCTGACATCAATTTGGAAAAGaatAGATTTTGGACACA
ATGAGGCTAACCCTATTATTTGTATGTCTGTTCGGTTTGGTATTGGTAGA
ATTGAACCACGGATACAAAACAGATCATAAAGAGGATGCAAAAGCTGTAA
CGAGCGAAAATGAAGATGCTTTTGAAAACGaaattataAATGATATCGAA
CTTGATGAAGACTTTGATGAAGAAGAGGAGCTGAGTGACATTGCTATCGA
ACAGCTTGCAGATCCTCAAAGGTCAAGGCGACGCCGACGACGACGCCGAA
GAAGACGACGAACCGCCACCGCCACTGGAACATCAACAACCGGTACTGGA
ACATCAACTGGAACTGGAACATCAACTGGAACTGGAACAACAGGAATCAA
TGCAGCCAGAGCTTTATTGGACGCAGAAGCAACCTGTCCAGAAAGACCTG
TAGGGACACCATGTTGCGGATTGGAACGTAGAACCTCTTGTAACAGGACA
TCCCGAAGACGAAGCGGAAGAAGACGAGGCCAAAACGGCAAGCGCTAAAA
CATGACATCATAAtacacaccattgcaatgtcttccacggaatCAACAGC
TTGACTAATTTTACATCACTTAAGGCCGgtgtccactttcgcgcgaagcg
cgcgaaacttttcacgttatttgtaacgtcattggttgattgaaaaaaga
agcaattccattggtcaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_276:367307..375144-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056500 ID=TCONS_00056500|Name=TCONS_00056500|organism=Clytia hemisphaerica|type=transcript|length=7838bp|location=Sequence derived from alignment at scaffold_276:367307..375144- (Clytia hemisphaerica)
CTTGGATCGTTGTCAGTTATGCTTTCCTAAGGCGAGACGTTTGAAGCCAT
ACGAAGGAGATTCGAAGTTTTGTCAACTAGAACATCTTTTCATTATGCGT
AGTACCACCTTAAAAATGCTGGTGTTTCGCTGTGCCCTGTCAAGCTGTGG
TATTCAATATTGCAACCACGCATTGTTTCTAAGCGAAGACAAAGAAGTTT
TTTGACAATTTTTTTGACGACGAATAAAATCTATTTGGAAATCTACTAAT
CAAGAGACAGGAGCTGACATCAATTTGGAAAAGGTATCAATTTTAAAGTT
TTGTTATTTCCTTGGAGGTAAATTTGAGTTGAATTGGGATATCAGGCACC
TGATTTTTATGTTTTCTTGCCTGCGATTGATAGTTGAAACCGTTTCGAAC
TGTTTTGCTTTGCTTTGTAACGTCTTCTTTTTAAAAATTTTTGAATTTCG
ACATGCACACTTGTTTCGAAACCCTCGAAACCATTTCGCTTTGCTATATG
GAACCGTAACGTCTGAACATGGTCTTAGTAGAGAGGGTAAAGTAAAATAG
CCATGAATGCTACTCCTTGCTCGTACCCTGCATTCGCCATAATAATTTCT
TTCCCCATTCGTTTTCCTTTTCTATAAACACTAGGATTGTGTTACATTAA
TTCTTAGGAGTAACAATTGCTTACCAAAGTTCTGAAACTTACAATCTCAC
ATATTTTTCTTTTTATAGAATAGATTTTGGACACAATGAGGCTAACCCTA
TTATGTAAGTATACCAGCTTTAATTTTAAGCCTGATTCCTACATTTCTTT
AATAAAAAAGTTGTTCGTTGACTCCTTCTTAATTTTCAAATTAATTATAA
CCCGCAAAGGTTACTAAGTAACAGTAAAATCCCTCGTAAAATCCAATAAT
CAAATATGACCAATCACTGTAATATCTGTCAAGACGTCTGATACCGACTG
CTTGACCCCCTGGTTATTTTAGTGGGCCAAAGGGTCAGATTCCTGCTAAT
TTTTATACTAACGTTGCTGAAGCCATCGCCATAAAAAATAGGAGATATCA
AATAATTAGCAATCGGTTTTCCATTGCCAGGTTTCCGGGCTAACATCTAT
TTTCTCTTTTGTTTCCAGTGCAAGAGATTATTTTTGAAACTAATTATATG
ACCGACTTCATTTAGATTGCGCTTTATTATCCTTCGGCGGGTATTATTTT
GTTATATCCCACTTCTTGATTATGTAATACCCCGCTTCCGCCCAAAATTT
CTTATGTGCTCACTGTCCTGCCGCCCCGCCACAAACAAGAAGCAGTTTAC
AGTATTTTTTTTCTTTTGCATTTCATTTAGTTGTATGTCTGTTCGGTTTG
GTATTGGTAGAATTGAACCACGGATACAAAACAGATCATAAAGAGGATGC
AAAAGCTGTAACGAGCGAAAATGAAGATGCTTTTGAAAACGGTAAGTAAG
ATTGAACCCAATCTCCGACCAAGAATATAGAACGCAATTTTGTTGTCACA
CATATAAGACCCCGGAATGGATAGCTGTCTGGGGCTTACGAGTTAGTTCA
TCTAATGTTTCCAGCTCACCCAAATAGAGACTTATACGCATGCGTAATTT
ATCGTTCTTTAAACCGCTAGTTCGTTCTTTGATAGTTAGGGTTAGGGTTA
TGGTTGTCGTTTTTTAATAGTTATATTTGTCGTTCTTCTTAGATGGTATG
GAAACGTTAGATGAATAGTTTCTCACAGACTATTTCTTTGAATTATTTTT
CACGTGACTTTTTATTCTTTTTTTATAGAAATTATAAATGATATCGAACT
TGATGAAGACTTTGATGAAGAAGAGGAGCTGAGTAAACATTTTTTCTTTA
TTGTTTTTTTCAACGTAGCCAGAATGGCAACATTTCAAGGTAGTTGTGTC
ACACCAGGTCACACCCACAGTGAAACTTTGGGGAGGAGAAATACCTATCG
AAATCCTAAAAGGGAATAGAAATTCTATTTTGGGTTGTCTTTTTTTCCCA
TTAAATTTTAAATGAGGATGAAGTCCATTTTCTAATGGAGCTGAAATTTG
GGTCCCACCGGGTCTTTAGGACATAAAGTTCCTTGATCTGGGGTGGCAGT
TGCTTACATTAATAAGCACTCGCGCGTAATAGATACTCAGGATAGGGTAA
GGGCCCGTCCACATCGACGGGATCATCCTTCCTTTAAGTCCATTCGCTTT
AAGTGTGCACTGAGCCTTGTTTTACCTGTCATTTGACATCAGGTGGCTTC
AAGGTACCTCTCTACCAAAATTGGAGTTTCTAACATCAAATAATAAAAAG
TTCTTTTTTTTCTTCTTTATTTTTCATCTTCATTTTCTAAAAATTATTTT
TCTCAGAAATTATAGTGCTCTGAAATATCTTTTTATCTTAATATTTATTA
TCGGTATATAATATGTTCGAATTGGATCATTGGTCGGGAAGTGGTAAATA
AAAAAGGATCTGTGCACACTTAAAACCTCCTTCTAACAGATCTGGTAGAA
TTTTTTCAGCCAGCGGAGATAAATCAACGTACTGAAACTCGATGGGGATT
GATTTTTCCATATTTTTTATGACTGGGGATTTCAATTCTTTTGTTTTCAA
GTCAGAAAATTCAATGGGGATGGGAAAAATAGTTAATATTTTGCAGTGAG
GATTGGCTTATTTGATTTTTTTCAGTGGAGATAAGAATTGGAGGATAGTT
TTCCACCGGGGACGATATTTTGGCCAATTTTCCCAGCGGGAAGGGGTCTA
AGTGGGTCTGTGAGAAGAGGATGTCACTTAAAGCGAATACTTTAGTTCAC
AGCATGTTTAAAAAACTTTGCTTTTATTTCTTCTTTTCAGGTGACATTGC
TATCGAACAGCTTGCAGGTAATTGATGTACACGTTTTTTTTATAAAAGCA
TCCAAAATTTTTGAAGACTTCGGATGTTTTAAACTTTTTGAGTTTTAATC
CTGAAAAGGTTATTTGCCTTTGCAGCGCACAACATTTTTTTTGAATCCCA
AAACTTTAAAATAGCGTTAAAGCTTGTTGCTTGAGAGTTAGACAATGGGA
CAATGGTTTTGATACCATTTGAAAGGTATTTTTTATACTCTTTCTAAAAG
CATTCGGTTTATGCCCTTTTAAATCAAGTGGTCAGGAGCCATCGCCATAA
GTCAAAAACTTGGTATATGAGCTCATTTTGGACGTTCATATACGTCATTC
GGGTCTGAAGGGTTAATATGTTATTATTTTCTTGCTTATTTACTTAATTA
TTTATTAGCTTTAAAAATTGCTCTATTTCGGCTCTGCGAGGGAGAAAAAT
ACACCTTCCTTCTATGTTGTGACGTAGGTTACGCGGACGAATGAATGTAA
TGTTGTAAGCAATGAAGTATAAGCCCGAAGGGCTAGAAGTCAATCTTTTT
GGTAGGATTTGAACCCGGGGGGGGGCACTCGATTTTGAAAGGACGGTATG
TGCCGCGCAAGATCTGCTTTTCAAAATCGTACCCTTACAGTGCAGTTCAA
TATGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNGTCGTCAAAAATGCGGCGCATTTTTTAAGGCTTCA
CTTTTTCTTGTCTGAGAAAGGTTAGAGATTAAACTCTAGCCCTTCGGGCT
TTAAACTCAATGGTTGTAAGTCTGCCCCAGTAAAACAGGAAAAATCTTGT
AAGAAGTTTTTTATATTTTACCATATTAATGCATATTGTGTCAAGTGTCA
AGGGCTATACTATCCTTTGTCGTGATTAAATAATCTTTAAAAAGCTTTCA
CTTTACGAGCCCTCGAGCCTTATTAAAGGGACATAAAAGTAGTAAAATGT
AAACATTGTGCGAACCACGTGTCATTAAAGAAAACAATTAAAATCACCTG
TCCAAAACAAACTTGTAAAACAATTGAAAAATCAAAATTAGCCATGTTTG
TTTTTTTGTTTTTTTTAATTTTGACATGTGACATTTGTTTTGATTTTGTA
TCCCGCTGCATACGGTTTGTTTACAAATTTCGTCAGTATTTTTATGTCCC
TTTAACCTGGTTGCTTAAAAAAATGTGGGGGGGGGACTTCTTTTTGCTCT
CTTTCATTTCTTTGAAAATAACAAAACCTAGTCGCTTAGTCCTACGTCAC
AAATTTTGTTGCCATGGTGATATAAATGAATTTTTAATTGCTATTATTCG
GTATAGAAAAAGTAAACATTTTTGGAATACACCTATTTCCTATTAGCAGA
TTCATGCAAAAGTCACGAAAAAACGTCGAGTAAACAAACTTTTGATTGGC
GGAGGCATGCAAAGATTACCTCATACTCTGGACATTTTGAAAAATATGCT
TGTATATGCAATATTTCAGCCAATCAGAGAATTTCTCGACGTTTTGACTC
TTTTATATGAATCCGCTAATAGGAGATACGTGTATTGTGTTAATTCGTGT
TGTGCTCTTTACGAATTTAGTCTAAAGTTTCATTGAAACAGATTGAAAAT
CACACATATTAATTCTTCTTTAATATATTGGCCATCAAAGCCTTATGTTC
TTATATTTTAATTATTTCTTTGCATTTATTCTTCATTACAGATCCTCAAA
GGTCAAGGCGACGCCGACGACGACGCCGAAGAAGACGACGAACCGCCACC
GCCACTGGAACATCAACAACCGGTACTGGAACATCAACTGGAACTGGAAC
ATCAACTGGAACTGGAACATCAACTGGAACTGGAACATCAACTGGAACTG
GAACAACAGGTATTCTCCCAATAATTCATTAATTATTGCTTTCCTTCCTT
TTTAACCTTTCCAGCGCCCAACATTTTCTTTTTAAATGTGAAAATTCAAA
ATTTCAAATTGGCAGCATAAAAGCTTGTAACTTGAGAGTTATTATTTTTC
TAAGCTATTTTTCATGTGACGTTATAATTACAGTTTTGTGACGTCATTAT
GACGTCATCGCAAAAATGACAACTTGAGTTTTTTGTAGCTTTTAGCTTTT
CGAGTTAATTAATTTCGAGATTTTTGTGGTGACGTCACTCTCTCGTGACG
TCGTAAAAACTGGAATTATGACGTCACATTGAAAATAACTCGGAAAAATA
ACTCAGGAAATCCAGGCCTCTTTTAAATCAAGTGGTCGGGAGTTATAGCC
TTAAGTCTGGGACTTGGTATATTAGGATATTCAGAACGTTTATACACGTC
TGCCGGGGTTTAAAGGGTTAAATCCTTTTTCAAGTATAAAAGTATAAAAT
AATAAGGTTCTGAGAAAGTTACTTGATTAGTTACCCAGCTGGCACAAAAC
GTTGTTTCAACGTTCATCTAACGTTATATGGACGTTATGAACGTTAAATA
AACGTTATATGGACGTTATGAACGTTAGATAAACGTTGAAACAGCGTTGT
GTGCCTGCTGGGTAGTGAAACAGTGATAACTGTGTTTACTCTCTTTATTT
GAATTCACAGGAATCAATGCAGCCAGAGCTTTATTGGACGCAGAAGCAAC
CTGTCCAGAAAGACCTGTAGGGACACCATGTTGCGGATTGGAACGTAGAA
CCTCTTGTAACAGGACATCCCGAAGACGAAGCGGAAGAAGACGAGGCCAA
AACGGCAAGCGCTAAAACATGACATCATAATACACACCATTGCAATGTCT
TCCACGGAATCAACAGCTTGACTAATTTTACATCACTTAAGGCCGGTGTC
CACTTTCGCGCGAAGCGCGCGAAACTTTTCACGTTATTTGTAACGTCATT
GGTTGATTGAAAAAAGAAGCAATTCCATTGGTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035591XLOC_035591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056500-exon-scaffold_276-1575043694:374862..375144TCONS_00056500-exon-scaffold_276-1575043694:374862..375144Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:374391..374426TCONS_00056500-exon-scaffold_276-1575043694:374391..374426Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:373704..373814TCONS_00056500-exon-scaffold_276-1575043694:373704..373814Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:373313..373366TCONS_00056500-exon-scaffold_276-1575043694:373313..373366Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:372278..372304TCONS_00056500-exon-scaffold_276-1575043694:372278..372304Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:368395..368503TCONS_00056500-exon-scaffold_276-1575043694:368395..368503Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:368336..368358TCONS_00056500-exon-scaffold_276-1575043694:368336..368358Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1575043694:367307..367634TCONS_00056500-exon-scaffold_276-1575043694:367307..367634Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:374862..375144TCONS_00056500-exon-scaffold_276-1510915933:374862..375144Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:374391..374426TCONS_00056500-exon-scaffold_276-1510915933:374391..374426Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:373704..373814TCONS_00056500-exon-scaffold_276-1510915933:373704..373814Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:373313..373366TCONS_00056500-exon-scaffold_276-1510915933:373313..373366Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:372278..372304TCONS_00056500-exon-scaffold_276-1510915933:372278..372304Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:368395..368503TCONS_00056500-exon-scaffold_276-1510915933:368395..368503Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:368336..368358TCONS_00056500-exon-scaffold_276-1510915933:368336..368358Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1510915933:367307..367634TCONS_00056500-exon-scaffold_276-1510915933:367307..367634Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:374862..375144TCONS_00056500-exon-scaffold_276-1491911889:374862..375144Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:374391..374426TCONS_00056500-exon-scaffold_276-1491911889:374391..374426Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:373704..373814TCONS_00056500-exon-scaffold_276-1491911889:373704..373814Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:373313..373366TCONS_00056500-exon-scaffold_276-1491911889:373313..373366Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:372278..372304TCONS_00056500-exon-scaffold_276-1491911889:372278..372304Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:368395..368503TCONS_00056500-exon-scaffold_276-1491911889:368395..368503Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:368336..368358TCONS_00056500-exon-scaffold_276-1491911889:368336..368358Clytia hemisphaericaexon
TCONS_00056500-exon-scaffold_276-1491911889:367307..367634TCONS_00056500-exon-scaffold_276-1491911889:367307..367634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:367307..375144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.571647	0.255592	0.853681	1.04974	0	0.366885	0.366688	0.561523	1.24638	2.42807	0.581518	2.0059	20.9742	22.991	9.90254e-10	0.208175	52.5101	52.5521	38.7879	45.0438	129.451	140.114	1.30394	0.542204	26.8741	18.9619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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