TCONS_00056501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056501
Unique NameTCONS_00056501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056501 ID=TCONS_00056501|Name=TCONS_00056501|organism=Clytia hemisphaerica|type=transcript|length=959bp
AAACATCTTGGATCGTTGTCAGTTATGCTTTCCTAAGGCGAGACGTTTGA
AGCCATACGAAGGAGATTCGAAGTTTTGTCAACTAGAACATCTTTTCATT
ATGCGTAGTACCACCTTAAAAATGCTGGTGTTTCGCTGTGCCCTGTCAAG
CTGTGGTATTCAATATTGCAACCACGCATTGTTTCTAAGCGAAGACAAAG
aagttttttgacaatttttttgacgACGAATAAAATCTATTTGGAAATCT
ACTAATCAAGAGACAGGAGCTGACATCAATTTGGAAAAGaatAGATTTTG
GACACAATGAGGCTAACCCTATTATTTGTATGTCTGTTCGGTTTGGTATT
GGTAGAATTGAACCACGGATACAAAACAGATCATAAAGAGGATGCAAAAG
CTGTAACGAGCGAAAATGAAGATGCTTTTGAAAACGaaattataAATGAT
ATCGAACTTGATGAAGACTTTGATGAAGAAGAGGAGCTGAGTGACATTGC
TATCGAACAGCTTGCAGATCCTCAAAGGTCAAGGCGACGCCGACGACGAC
GCCGAAGAAGACGACGAACCGCCACCGCCACTGGAACATCAACAACCGGT
ACTGGAACATCAACTGGAACTGGAACAACAGGAATCAATGCAGCCAGAGC
TTTATTGGACGCAGAAGCAACCTGTCCAGAAAGACCTGTAGGGACACCAT
GTTGCGGATTGGAACGTAGAACCTCTTGTAACAGGACATCCCGAAGACGA
AGCGGAAGAAGACGAGGCCAAAACGGCAAGCGCTAAAACATGACATCATA
AtacacaccattgcaatgtcttccacggaatCAACAGCTTGACTAATTTT
ACATCACTTAAGGCCGgtgtccactttcgcgcgaagcgcgcgaaactttt
cacgttatttgtaacgtcattggttgattgaaaaaagaagcaattccatt
ggtcaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_276:367307..375150-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056501 ID=TCONS_00056501|Name=TCONS_00056501|organism=Clytia hemisphaerica|type=transcript|length=7844bp|location=Sequence derived from alignment at scaffold_276:367307..375150- (Clytia hemisphaerica)
AAACATCTTGGATCGTTGTCAGTTATGCTTTCCTAAGGCGAGACGTTTGA
AGCCATACGAAGGAGATTCGAAGTTTTGTCAACTAGAACATCTTTTCATT
ATGCGTAGTACCACCTTAAAAATGCTGGTGTTTCGCTGTGCCCTGTCAAG
CTGTGGTATTCAATATTGCAACCACGCATTGTTTCTAAGCGAAGACAAAG
AAGTTTTTTGACAATTTTTTTGACGACGAATAAAATCTATTTGGAAATCT
ACTAATCAAGAGACAGGAGCTGACATCAATTTGGAAAAGGTATCAATTTT
AAAGTTTTGTTATTTCCTTGGAGGTAAATTTGAGTTGAATTGGGATATCA
GGCACCTGATTTTTATGTTTTCTTGCCTGCGATTGATAGTTGAAACCGTT
TCGAACTGTTTTGCTTTGCTTTGTAACGTCTTCTTTTTAAAAATTTTTGA
ATTTCGACATGCACACTTGTTTCGAAACCCTCGAAACCATTTCGCTTTGC
TATATGGAACCGTAACGTCTGAACATGGTCTTAGTAGAGAGGGTAAAGTA
AAATAGCCATGAATGCTACTCCTTGCTCGTACCCTGCATTCGCCATAATA
ATTTCTTTCCCCATTCGTTTTCCTTTTCTATAAACACTAGGATTGTGTTA
CATTAATTCTTAGGAGTAACAATTGCTTACCAAAGTTCTGAAACTTACAA
TCTCACATATTTTTCTTTTTATAGAATAGATTTTGGACACAATGAGGCTA
ACCCTATTATGTAAGTATACCAGCTTTAATTTTAAGCCTGATTCCTACAT
TTCTTTAATAAAAAAGTTGTTCGTTGACTCCTTCTTAATTTTCAAATTAA
TTATAACCCGCAAAGGTTACTAAGTAACAGTAAAATCCCTCGTAAAATCC
AATAATCAAATATGACCAATCACTGTAATATCTGTCAAGACGTCTGATAC
CGACTGCTTGACCCCCTGGTTATTTTAGTGGGCCAAAGGGTCAGATTCCT
GCTAATTTTTATACTAACGTTGCTGAAGCCATCGCCATAAAAAATAGGAG
ATATCAAATAATTAGCAATCGGTTTTCCATTGCCAGGTTTCCGGGCTAAC
ATCTATTTTCTCTTTTGTTTCCAGTGCAAGAGATTATTTTTGAAACTAAT
TATATGACCGACTTCATTTAGATTGCGCTTTATTATCCTTCGGCGGGTAT
TATTTTGTTATATCCCACTTCTTGATTATGTAATACCCCGCTTCCGCCCA
AAATTTCTTATGTGCTCACTGTCCTGCCGCCCCGCCACAAACAAGAAGCA
GTTTACAGTATTTTTTTTCTTTTGCATTTCATTTAGTTGTATGTCTGTTC
GGTTTGGTATTGGTAGAATTGAACCACGGATACAAAACAGATCATAAAGA
GGATGCAAAAGCTGTAACGAGCGAAAATGAAGATGCTTTTGAAAACGGTA
AGTAAGATTGAACCCAATCTCCGACCAAGAATATAGAACGCAATTTTGTT
GTCACACATATAAGACCCCGGAATGGATAGCTGTCTGGGGCTTACGAGTT
AGTTCATCTAATGTTTCCAGCTCACCCAAATAGAGACTTATACGCATGCG
TAATTTATCGTTCTTTAAACCGCTAGTTCGTTCTTTGATAGTTAGGGTTA
GGGTTATGGTTGTCGTTTTTTAATAGTTATATTTGTCGTTCTTCTTAGAT
GGTATGGAAACGTTAGATGAATAGTTTCTCACAGACTATTTCTTTGAATT
ATTTTTCACGTGACTTTTTATTCTTTTTTTATAGAAATTATAAATGATAT
CGAACTTGATGAAGACTTTGATGAAGAAGAGGAGCTGAGTAAACATTTTT
TCTTTATTGTTTTTTTCAACGTAGCCAGAATGGCAACATTTCAAGGTAGT
TGTGTCACACCAGGTCACACCCACAGTGAAACTTTGGGGAGGAGAAATAC
CTATCGAAATCCTAAAAGGGAATAGAAATTCTATTTTGGGTTGTCTTTTT
TTCCCATTAAATTTTAAATGAGGATGAAGTCCATTTTCTAATGGAGCTGA
AATTTGGGTCCCACCGGGTCTTTAGGACATAAAGTTCCTTGATCTGGGGT
GGCAGTTGCTTACATTAATAAGCACTCGCGCGTAATAGATACTCAGGATA
GGGTAAGGGCCCGTCCACATCGACGGGATCATCCTTCCTTTAAGTCCATT
CGCTTTAAGTGTGCACTGAGCCTTGTTTTACCTGTCATTTGACATCAGGT
GGCTTCAAGGTACCTCTCTACCAAAATTGGAGTTTCTAACATCAAATAAT
AAAAAGTTCTTTTTTTTCTTCTTTATTTTTCATCTTCATTTTCTAAAAAT
TATTTTTCTCAGAAATTATAGTGCTCTGAAATATCTTTTTATCTTAATAT
TTATTATCGGTATATAATATGTTCGAATTGGATCATTGGTCGGGAAGTGG
TAAATAAAAAAGGATCTGTGCACACTTAAAACCTCCTTCTAACAGATCTG
GTAGAATTTTTTCAGCCAGCGGAGATAAATCAACGTACTGAAACTCGATG
GGGATTGATTTTTCCATATTTTTTATGACTGGGGATTTCAATTCTTTTGT
TTTCAAGTCAGAAAATTCAATGGGGATGGGAAAAATAGTTAATATTTTGC
AGTGAGGATTGGCTTATTTGATTTTTTTCAGTGGAGATAAGAATTGGAGG
ATAGTTTTCCACCGGGGACGATATTTTGGCCAATTTTCCCAGCGGGAAGG
GGTCTAAGTGGGTCTGTGAGAAGAGGATGTCACTTAAAGCGAATACTTTA
GTTCACAGCATGTTTAAAAAACTTTGCTTTTATTTCTTCTTTTCAGGTGA
CATTGCTATCGAACAGCTTGCAGGTAATTGATGTACACGTTTTTTTTATA
AAAGCATCCAAAATTTTTGAAGACTTCGGATGTTTTAAACTTTTTGAGTT
TTAATCCTGAAAAGGTTATTTGCCTTTGCAGCGCACAACATTTTTTTTGA
ATCCCAAAACTTTAAAATAGCGTTAAAGCTTGTTGCTTGAGAGTTAGACA
ATGGGACAATGGTTTTGATACCATTTGAAAGGTATTTTTTATACTCTTTC
TAAAAGCATTCGGTTTATGCCCTTTTAAATCAAGTGGTCAGGAGCCATCG
CCATAAGTCAAAAACTTGGTATATGAGCTCATTTTGGACGTTCATATACG
TCATTCGGGTCTGAAGGGTTAATATGTTATTATTTTCTTGCTTATTTACT
TAATTATTTATTAGCTTTAAAAATTGCTCTATTTCGGCTCTGCGAGGGAG
AAAAATACACCTTCCTTCTATGTTGTGACGTAGGTTACGCGGACGAATGA
ATGTAATGTTGTAAGCAATGAAGTATAAGCCCGAAGGGCTAGAAGTCAAT
CTTTTTGGTAGGATTTGAACCCGGGGGGGGGCACTCGATTTTGAAAGGAC
GGTATGTGCCGCGCAAGATCTGCTTTTCAAAATCGTACCCTTACAGTGCA
GTTCAATATGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNGTCGTCAAAAATGCGGCGCATTTTTTAAG
GCTTCACTTTTTCTTGTCTGAGAAAGGTTAGAGATTAAACTCTAGCCCTT
CGGGCTTTAAACTCAATGGTTGTAAGTCTGCCCCAGTAAAACAGGAAAAA
TCTTGTAAGAAGTTTTTTATATTTTACCATATTAATGCATATTGTGTCAA
GTGTCAAGGGCTATACTATCCTTTGTCGTGATTAAATAATCTTTAAAAAG
CTTTCACTTTACGAGCCCTCGAGCCTTATTAAAGGGACATAAAAGTAGTA
AAATGTAAACATTGTGCGAACCACGTGTCATTAAAGAAAACAATTAAAAT
CACCTGTCCAAAACAAACTTGTAAAACAATTGAAAAATCAAAATTAGCCA
TGTTTGTTTTTTTGTTTTTTTTAATTTTGACATGTGACATTTGTTTTGAT
TTTGTATCCCGCTGCATACGGTTTGTTTACAAATTTCGTCAGTATTTTTA
TGTCCCTTTAACCTGGTTGCTTAAAAAAATGTGGGGGGGGGACTTCTTTT
TGCTCTCTTTCATTTCTTTGAAAATAACAAAACCTAGTCGCTTAGTCCTA
CGTCACAAATTTTGTTGCCATGGTGATATAAATGAATTTTTAATTGCTAT
TATTCGGTATAGAAAAAGTAAACATTTTTGGAATACACCTATTTCCTATT
AGCAGATTCATGCAAAAGTCACGAAAAAACGTCGAGTAAACAAACTTTTG
ATTGGCGGAGGCATGCAAAGATTACCTCATACTCTGGACATTTTGAAAAA
TATGCTTGTATATGCAATATTTCAGCCAATCAGAGAATTTCTCGACGTTT
TGACTCTTTTATATGAATCCGCTAATAGGAGATACGTGTATTGTGTTAAT
TCGTGTTGTGCTCTTTACGAATTTAGTCTAAAGTTTCATTGAAACAGATT
GAAAATCACACATATTAATTCTTCTTTAATATATTGGCCATCAAAGCCTT
ATGTTCTTATATTTTAATTATTTCTTTGCATTTATTCTTCATTACAGATC
CTCAAAGGTCAAGGCGACGCCGACGACGACGCCGAAGAAGACGACGAACC
GCCACCGCCACTGGAACATCAACAACCGGTACTGGAACATCAACTGGAAC
TGGAACATCAACTGGAACTGGAACATCAACTGGAACTGGAACATCAACTG
GAACTGGAACAACAGGTATTCTCCCAATAATTCATTAATTATTGCTTTCC
TTCCTTTTTAACCTTTCCAGCGCCCAACATTTTCTTTTTAAATGTGAAAA
TTCAAAATTTCAAATTGGCAGCATAAAAGCTTGTAACTTGAGAGTTATTA
TTTTTCTAAGCTATTTTTCATGTGACGTTATAATTACAGTTTTGTGACGT
CATTATGACGTCATCGCAAAAATGACAACTTGAGTTTTTTGTAGCTTTTA
GCTTTTCGAGTTAATTAATTTCGAGATTTTTGTGGTGACGTCACTCTCTC
GTGACGTCGTAAAAACTGGAATTATGACGTCACATTGAAAATAACTCGGA
AAAATAACTCAGGAAATCCAGGCCTCTTTTAAATCAAGTGGTCGGGAGTT
ATAGCCTTAAGTCTGGGACTTGGTATATTAGGATATTCAGAACGTTTATA
CACGTCTGCCGGGGTTTAAAGGGTTAAATCCTTTTTCAAGTATAAAAGTA
TAAAATAATAAGGTTCTGAGAAAGTTACTTGATTAGTTACCCAGCTGGCA
CAAAACGTTGTTTCAACGTTCATCTAACGTTATATGGACGTTATGAACGT
TAAATAAACGTTATATGGACGTTATGAACGTTAGATAAACGTTGAAACAG
CGTTGTGTGCCTGCTGGGTAGTGAAACAGTGATAACTGTGTTTACTCTCT
TTATTTGAATTCACAGGAATCAATGCAGCCAGAGCTTTATTGGACGCAGA
AGCAACCTGTCCAGAAAGACCTGTAGGGACACCATGTTGCGGATTGGAAC
GTAGAACCTCTTGTAACAGGACATCCCGAAGACGAAGCGGAAGAAGACGA
GGCCAAAACGGCAAGCGCTAAAACATGACATCATAATACACACCATTGCA
ATGTCTTCCACGGAATCAACAGCTTGACTAATTTTACATCACTTAAGGCC
GGTGTCCACTTTCGCGCGAAGCGCGCGAAACTTTTCACGTTATTTGTAAC
GTCATTGGTTGATTGAAAAAAGAAGCAATTCCATTGGTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035591XLOC_035591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056501-exon-scaffold_276-1575043694:374862..375150TCONS_00056501-exon-scaffold_276-1575043694:374862..375150Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:374391..374426TCONS_00056501-exon-scaffold_276-1575043694:374391..374426Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:373704..373814TCONS_00056501-exon-scaffold_276-1575043694:373704..373814Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:373313..373366TCONS_00056501-exon-scaffold_276-1575043694:373313..373366Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:372278..372304TCONS_00056501-exon-scaffold_276-1575043694:372278..372304Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:368413..368503TCONS_00056501-exon-scaffold_276-1575043694:368413..368503Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:368336..368358TCONS_00056501-exon-scaffold_276-1575043694:368336..368358Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1575043694:367307..367634TCONS_00056501-exon-scaffold_276-1575043694:367307..367634Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:374862..375150TCONS_00056501-exon-scaffold_276-1510915933:374862..375150Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:374391..374426TCONS_00056501-exon-scaffold_276-1510915933:374391..374426Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:373704..373814TCONS_00056501-exon-scaffold_276-1510915933:373704..373814Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:373313..373366TCONS_00056501-exon-scaffold_276-1510915933:373313..373366Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:372278..372304TCONS_00056501-exon-scaffold_276-1510915933:372278..372304Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:368413..368503TCONS_00056501-exon-scaffold_276-1510915933:368413..368503Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:368336..368358TCONS_00056501-exon-scaffold_276-1510915933:368336..368358Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1510915933:367307..367634TCONS_00056501-exon-scaffold_276-1510915933:367307..367634Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:374862..375150TCONS_00056501-exon-scaffold_276-1491911889:374862..375150Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:374391..374426TCONS_00056501-exon-scaffold_276-1491911889:374391..374426Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:373704..373814TCONS_00056501-exon-scaffold_276-1491911889:373704..373814Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:373313..373366TCONS_00056501-exon-scaffold_276-1491911889:373313..373366Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:372278..372304TCONS_00056501-exon-scaffold_276-1491911889:372278..372304Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:368413..368503TCONS_00056501-exon-scaffold_276-1491911889:368413..368503Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:368336..368358TCONS_00056501-exon-scaffold_276-1491911889:368336..368358Clytia hemisphaericaexon
TCONS_00056501-exon-scaffold_276-1491911889:367307..367634TCONS_00056501-exon-scaffold_276-1491911889:367307..367634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:367307..375150 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0750058	0	0.0849254	0	0	0	0	0	0.194607	0	0	0	0	0	0	0	0.45236	1.01859	0.308173	0	0	0.409596	0	0.344094	0.461351	0.230868	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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