TCONS_00056511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056511
Unique NameTCONS_00056511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056511 ID=TCONS_00056511|Name=TCONS_00056511|organism=Clytia hemisphaerica|type=transcript|length=1111bp
TTTTTAGagaagaacaatttaaaatacaATTCATTTACTATCCCTTGATC
TTGagcttcagtttaaaaaaagaatcataATGCATGGTAGACTGAAGGTG
AAAACAACTGCTCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAaaagaa
agtcaaaatattCACTGGTGCTATGAAGCAAATTTTCACACAGCGTGGAA
ATGATGAATTGATGGATTCTACTTTACAACTAACACAACAAATCCTTGCA
AGCAATCCAGATGTTTATACACTGTGGAATATACGGAAagagatttttgt
gaaaaaacttGAAGTAGTTGAAGATATTGATAAGCTTTTGCTAGAAGAAC
TGGATTTTCTACAGAACTGTTTACAAGTCAACCCAAAGTCATATGGAGTA
TGGAATCACCGAATGTTCACCatgttaaaaatgaaaacaccAAATTGGCC
ACGTGAATTGAAGTTGTGTAATTTGTTCCTACAGTATGATGAAAGGAACT
ttcattGTTGGGATTACAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCA
GCTGAGGAAGAATTAAACTACACTAcagagaaaatcaaagaaaactttTC
CAACTATTCGTCATGGCATAACAGGAGCAAACTACTTCCNCAAAGAAAAC
TTTTCCAATTATTCGTCATGGCATAACAGGAGCAAACTACTTCCACAAGT
TTTCCCTGATGAGAGTGGCAAAGTTAAAGAGGAAGAATTACTGAAAGAGT
TTGAACTGGTACAGAATGCATTTTTCACTGATCCAAACGATCAGAGTGCT
TGGTTTTATCAGAGATGGTTACTTGGCAGaaGGAAGGAAGAAACAAGACT
GCTGTCTTTGATCATCAAAAGAACTTCAAAGACTCTGGTTGCTTCTTTCT
CACAACCAGTCAAGaaatgtgaCCTTTGTGAAAGTTGTTCGAAATCAGGT
GAAGAAACGTTATTGATTTGGAAGCCATTAGCACCGACTCAATCAAATGT
CTCTCATACTTGGGTCAGCGAGATCAATCTACAAACTGATGAGTCATCAA
TGATATCTGTGGTATTCCCTACGATAACTGCTGATAGATCCTTCAGTTTG
GAGATACTTGA
Run BLAST on NCBI

protein sequence of TCONS_00056511-protein

>TCONS_00056511-protein ID=TCONS_00056511-protein|Name=TCONS_00056511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MHGRLKVKTTAQQQEEKRKEREKKVKIFTGAMKQIFTQRGNDELMDSTLQ
LTQQILASNPDVYTLWNIRKEIFVKKLEVVEDIDKLLLEELDFLQNCLQV
NPKSYGVWNHRMFTMLKMKTPNWPRELKLCNLFLQYDERNFHCWDYRRFV
VRESKVPAEEELNYTTEKIKENFSNYSSWHNRSKLLXQRKLFQLFVMA
Run BLAST on NCBI

transcript from alignment at scaffold_276:490438..495355-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056511 ID=TCONS_00056511|Name=TCONS_00056511|organism=Clytia hemisphaerica|type=transcript|length=4918bp|location=Sequence derived from alignment at scaffold_276:490438..495355- (Clytia hemisphaerica)
TTTTTAGAGAAGAACAATTTAAAATACAATTCATTTACTATCCCTTGATC
TTGAGCTTCAGTTTAAAAAAAGAATCATAATGGTAAGAGACATACATTAC
AAAGTAGCTGCTACCATTTCAAAGCAGTGGCATCAGCAAACTTCCGAAAG
TTTTGTGTTTTCTATATGTATATTCCAAATATTTTGTACTATATTTCTGA
CTTTCCAAGCGATCTTGTTGAGTTCGGCAATCCATCAATTACAGCCCGCA
ATAAGCCGGTAGACAGTTTGCCGGCAACATTTGTGTAAATTCTTTTTTTA
GAAAAGGATTTGGTTTAAGGGGAGACTTTGGCTGGCAATCTGCCGGTAAC
AAAGAAAAATAGCCGTCAATTTGCTGGGAATGAAGAAAAATATCCAGCAA
TATGCTGGCAACAAAGAAAACTTGTTTACAGTTATTGTCCGCACTTTTTC
CACTATGTCATCCAGCAATTTGCCATCTATCGTTATAACATTGCGGGCTA
CACCAAACAGGATAACCTGTAATTTGCCGGCAAAAACAAAGCCAGCTAGT
TGGCAACAAGAATTTCATGTCCTTTGAATTGCCTGTATGGTCACATTTAA
CCAATCTGACATGGAATATTTTTTTTGGGTCGACGTTAAGTATTTAAGCT
CATTATCTGAATGATTTTTATCAATAGCATGGTAGACTGAAGGTGAAAAC
AACTGCTCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAAAAGAAAGTCA
AAATATTCACTGGTGCTATGAAGCAAATTTTCACACAGGTAAATAAGACT
TTTTCAATTACCTTACTCGTGTAAACGTTTTCCAATCCCTATACAGCAAC
TAGGTCTGATTAGGCAAAAAGGGCAATTTTGGGCCGTTCTGTAAAATACA
CTATACCAGCAGGTAGCAAAAAAATTTATCATGTGCCCCAAAAATAAATG
TCATGTGGAGGTGCATCACAAAATTTGAACTGGGTTTCTTTACCCCACCC
CTAAGATTCTTGAAAGGTTACCCTATTAATCCTAGGCTTTTGGGGGTTTA
TGATGGTTTTATGATATATTTGACATAAATAAATTTGTGTTGGAAAAGTG
TCAGTTTTTGTGACACCTTACTGTCAGAAATGTCATTATGCTCAAGGTGT
GAAAATTTTTAGGTGTCAAATTTTTTTTTATTTAAAGCTAAATAAAAGTT
AGGAATTTACAAAAAGTTTCATGGCAAAAGCTCTATTATTTCAGCAGCTA
TTACCATTAATTTGACCTCCGAACAGAAAAAGTTCCCCCATATCCCCCTA
GGACGAATAGGGTTAAGGAAATAATTTTGGCACAAATTAACTTAAGTGAT
TCTGTGTGTCCTCTGGGAAAATAAGTCACAAAAAATACAATTTTATTAAA
TCTAAAATAAACCCTTGAAAAAGATAAGTGGACTTTCATAACTACTGCTA
ACAACATCAGCATTTTATTCTTTGAATGAGAAAATTAGTTTAGGCCAAAC
TACTGTAGTTTCTGTGAGAATTAGCTACTTGAAGACTCAATTACGTATTT
AACAGCCTCTTTTTATTACTTTGTAGCGTGGAAATGATGAATTGATGGAT
TCTACTTTACAACTAACACAACAAATCCTTGCAAGCAATCCAGATGTTTA
TACACTGTGGAATATACGGAAAGAGATTTTTGTGAAAAAACTTGAAGTAG
TGTAAGTTGACGAATGCATTGAGACAAAAATATCTTCTTTTTTTTCTTTG
CTTAAATCAATAAATTTTTTTCAATTCCCTTAAAGTTTGCCATTTACTAG
TATTTAACTGATAAGTATCTCTCTCACACCCTAGTGGATCTCTTTTTTTT
CAAAGACCTAAATAAAAACCTTAACTTAAGAATTCAAAATATACTCAATT
TTTGTAATTTTAAATTCATGTTGAAGTCGTAGCATTCCCATGTTGGCACT
ATAGTGGTAAATTCTTGACGATGATATGTACATGGTGTAGTGCTATAATT
TAGTACACAATTATTAAAAACTATTTACAATTTCTGTATTCCAGTGAAGA
TATTGATAAGCTTTTGCTAGAAGAACTGGATTTTCTACAGAACTGTTTAC
AAGTCAACCCAAAGTCATATGGAGTATGGAATCACCGAATGTTCACCATG
TTAAAAATGAAAACACCAAATTGGCCACGTGAATTGAAGTTGTGTAATTT
GTTCCTACAGTATGATGAAAGGAACTGTAAGTTCTTTACGTCTCTTGATT
TAAAAATGTTTTTGTTCTAATACCTAAATAGATTATAAAGGGATGTAGTT
ACTAAAATTCCTGACTATAATTTATAGTTATTGGACCAAGTCAACTTAAA
CAGTATGTGAGAGGTTTGAGATCCTGGGGGGATTAGAATGCAGGATATGT
ACAGACCCGACCTCTGAAATGTAACCCTTAAAGAGACCGAATTTTTGTGC
AAAATTGACGATTTTTTAAATAGTTTTCTAACCTTAGGAGAGATTCTTTT
GACATTTATGTTTTTTGTACCCTTGGAGAGACTGCATCCTGCCAGCACCT
ATTTTTGCCCCCTGGATTTCAGAGAGAGGCTACAGTAGGCTGTTTTTCCT
TAACTGTTTACATTTTGATTTTGTCGTATAAATCAAAAAAGAAACCTTTT
TGTTTTCAACAGTGAGTATTAAAATAAAGATTTCTGCCTTCCTAGATCAT
AAGATCCTGATCCTAGATCAGCCTATTTTATAGTCAATTGGCTCAAAGCT
TTCCAAATTTAATTTTTTGACTTGATTTTTTCAGTTCATTGTTGGGATTA
CAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCAGCTGAGGAAGAATTAA
ACTACACTACAGAGAAAATCAAAGAAAACTTTTCCAACTATTCGTCATGG
CATAACAGGAGCAAACTACTTCCNCAAAGAAAACTTTTCCAATTATTCGT
CATGGCATAACAGGAGCAAACTACTTCCACAAGTTTTCCCTGATGAGAGT
GGCAAAGTTAAAGAGGAAGAATTACTGAAAGGTTCGCAAATTTTGTATTC
ATTTTTTTGAAGATTTTACTTCTACTAAAATGAAAATCTTACGTGACAAT
CTTCACAACACCCATTAGCTCAACTTATGATATAGGCAAAAGGTCGAAAG
TTGGATTGTTTGCTTTGGATTGTAAAAGTGGGGCGGATTATCACATGTAT
ATTTCAAATTGTGATAGAGCATTCTGAACAACTTTAAATTTCCTTGCAAA
CAGTATATAATATGTTAGGGTTTTTCGGAGATTAAATTTTTGAAAAAAAG
GTGCTGACGTCAACAGAAACATCATTTTCAAGAGTGTCTCTCTCAATTTT
TATTTTCTTTACTTCATGAGGAACCTCTTTATAAAATTTCAGAGCTCTAT
CACAATTTGATCGAATGAATTTGAATCGTCCCTTTTTTATGTGCTAGCCT
ACCCAACTATATAATACCCATTAAAGCAGATTAAAGAACCATTTTTGTAT
ACCTCTTTGATGAATATTGTAACCAACTCATTTACTTAAACTTAATACGA
GTAAATTTACATTTCCCTCATTGTTAAGTGAATTTATTCTTTTCTTAGAG
TTTGAACTGGTACAGAATGCATTTTTCACTGATCCAAACGATCAGAGTGC
TTGGTTTTATCAGAGATGGTTACTTGGCAGAAGTAAAGATTTTTTTTTTT
TACTGGTTACCACTAACTTTGCAAGCATTTACCCACAATTGCCACATCGG
AGTCGATTTTTCTTTTTTCTGACTCAGACTTAAGTTTTGCCCCCCCCCCC
TTGAAATTGGAGTTCCCTGTTATTAATTTGCCCATTTATAAGAACATTTT
TAAAAATATGGAGAGACCATTTTTTTCAAGGTCCTGCGGAACAACCCCCC
TGTTGTAGCCATGTCTACATTTTGACCAAATAAAGGGGCTTTTTTACAAC
TAATGAAATCATGATGTAAAGGGGGTAAAAGTTGTTTCTGATAAGTATTG
ATTTTCTAGGGAAGGAAGAAACAAGACTGCTGTCTTTGATCATCAAAAGA
ACTTCAAAGACTCTGGTTGCTTCTTTCTCACAACCAGTCAAGGTATATTG
CTTTACGATAAATGACTAGGATATATTGCTTTACGATAAATAATGACTAG
GGTATATTGCTTTACGATAAATGACTAGGGTACTTAGTTCATAGAAAAGT
ATTTACTGAATAATCTAGATTCCTCTATAATGATAAAAAAATTATCTAAG
TTACAGTTTGCTTTGTCTTTCGTTCTCTTTGAAATACCTATTTAAAACTC
AATAAGTTTGAATGGAAATTACAGAAAAAATCTTATGTTTTACATTTTAC
ATTTTTTTAGAAATGTGACCTTTGTGAAAGTTGTTCGAAATCAGGTGAAG
AAACGTTATTGATTTGGAAGCCATTAGCACCGACTCAATCAAATGTCTCT
CATACTTGGGTAAGTAGTGGTCGAGCATTTAATTTTTGATTTTTCTCTTT
CTCTGTTTTTCTCTAGTTTGAAATTTGTTAGTTCTAGTTTAGACGGCCGA
CTTTCTGACCCGCATATTCTTGGAGTAGGCAAAAAGTGAACAGAAAGTTG
GCAGTTAAAGTCTTCATTGATTTAAAAAATTGAAAGAAGGAATTGCACTG
ACATCAAAAGAGGGCAATGCATCGACTTTAAAAGGTCAACTTTTTGCCAA
TTTTAATTTTAATTCAAGATGAGAATAGATAGGCGGAAAAGTTGGCCGTA
TAAACCAGACCTAGCGCGCTATTCCATGTTTTTCTTACAACTAATAAATT
CGTTCCATTTTTATTTGTAGGTCAGCGAGATCAATCTACAAACTGATGAG
TCATCAATGATATCTGTGGTATTCCCTACGATAACTGCTGATAGATCCTT
CAGTTTGGAGATACTTGA

Coding sequence (CDS) from alignment at scaffold_276:490438..495355-

>TCONS_00056511 ID=TCONS_00056511|Name=TCONS_00056511|organism=Clytia hemisphaerica|type=CDS|length=2985bp|location=Sequence derived from alignment at scaffold_276:490438..495355- (Clytia hemisphaerica)
TTCATTGTTGGGATTACAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCA
GCTGAGGAAGAATTAAACTACACTACAGAGAAAATCAAAGAAAACTTTTC
CAACTATTCGTCATGGCATAACAGGAGCAAACTACTTCCNCAAAGAAAAC
TTTTCCAATTATTCGTCATGGCATAATGAAGATATTGATAAGCTTTTGCT
AGAAGAACTGGATTTTCTACAGAACTGTTTACAAGTCAACCCAAAGTCAT
ATGGAGTATGGAATCACCGAATGTTCACCATGTTAAAAATGAAAACACCA
AATTGGCCACGTGAATTGAAGTTGTGTAATTTGTTCCTACAGTATGATGA
AAGGAACTCGTGGAAATGATGAATTGATGGATTCTACTTTACAACTAACA
CAACAAATCCTTGCAAGCAATCCAGATGTTTATACACTGTGGAATATACG
GAAAGAGATTTTTGTGAAAAAACTTGAAGTAGTCATGGTAGACTGAAGGT
GAAAACAACTGCTCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAAAAGA
AAGTCAAAATATTCACTGGTGCTATGAAGCAAATTTTCACACAGATGTTC
ATTGTTGGGATTACAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCAGCT
GAGGAAGAATTAAACTACACTACAGAGAAAATCAAAGAAAACTTTTCCAA
CTATTCGTCATGGCATAACAGGAGCAAACTACTTCCNCAAAGAAAACTTT
TCCAATTATTCGTCATGGCATAATGAAGATATTGATAAGCTTTTGCTAGA
AGAACTGGATTTTCTACAGAACTGTTTACAAGTCAACCCAAAGTCATATG
GAGTATGGAATCACCGAATGTTCACCATGTTAAAAATGAAAACACCAAAT
TGGCCACGTGAATTGAAGTTGTGTAATTTGTTCCTACAGTATGATGAAAG
GAACTCGTGGAAATGATGAATTGATGGATTCTACTTTACAACTAACACAA
CAAATCCTTGCAAGCAATCCAGATGTTTATACACTGTGGAATATACGGAA
AGAGATTTTTGTGAAAAAACTTGAAGTAGTCATGGTAGACTGAAGGTGAA
AACAACTGCTCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAAAAGAAAG
TCAAAATATTCACTGGTGCTATGAAGCAAATTTTCACACAGATGTTCATT
GTTGGGATTACAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCAGCTGAG
GAAGAATTAAACTACACTACAGAGAAAATCAAAGAAAACTTTTCCAACTA
TTCGTCATGGCATAACAGGAGCAAACTACTTCCNCAAAGAAAACTTTTCC
AATTATTCGTCATGGCATAATGAAGATATTGATAAGCTTTTGCTAGAAGA
ACTGGATTTTCTACAGAACTGTTTACAAGTCAACCCAAAGTCATATGGAG
TATGGAATCACCGAATGTTCACCATGTTAAAAATGAAAACACCAAATTGG
CCACGTGAATTGAAGTTGTGTAATTTGTTCCTACAGTATGATGAAAGGAA
CTCGTGGAAATGATGAATTGATGGATTCTACTTTACAACTAACACAACAA
ATCCTTGCAAGCAATCCAGATGTTTATACACTGTGGAATATACGGAAAGA
GATTTTTGTGAAAAAACTTGAAGTAGTCATGGTAGACTGAAGGTGAAAAC
AACTGCTCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAAAAGAAAGTCA
AAATATTCACTGGTGCTATGAAGCAAATTTTCACACAGATGTTCATTGTT
GGGATTACAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCAGCTGAGGAA
GAATTAAACTACACTACAGAGAAAATCAAAGAAAACTTTTCCAACTATTC
GTCATGGCATAACAGGAGCAAACTACTTCCNCAAAGAAAACTTTTCCAAT
TATTCGTCATGGCATAATGAAGATATTGATAAGCTTTTGCTAGAAGAACT
GGATTTTCTACAGAACTGTTTACAAGTCAACCCAAAGTCATATGGAGTAT
GGAATCACCGAATGTTCACCATGTTAAAAATGAAAACACCAAATTGGCCA
CGTGAATTGAAGTTGTGTAATTTGTTCCTACAGTATGATGAAAGGAACTC
GTGGAAATGATGAATTGATGGATTCTACTTTACAACTAACACAACAAATC
CTTGCAAGCAATCCAGATGTTTATACACTGTGGAATATACGGAAAGAGAT
TTTTGTGAAAAAACTTGAAGTAGTCATGGTAGACTGAAGGTGAAAACAAC
TGCTCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAAAAGAAAGTCAAAA
TATTCACTGGTGCTATGAAGCAAATTTTCACACAGATGTTCATTGTTGGG
ATTACAGGCGATTCGTGGTCAGAGAATCAAAAGTGCCAGCTGAGGAAGAA
TTAAACTACACTACAGAGAAAATCAAAGAAAACTTTTCCAACTATTCGTC
ATGGCATAACAGGAGCAAACTACTTCCNCAAAGAAAACTTTTCCAATTAT
TCGTCATGGCATAATGAAGATATTGATAAGCTTTTGCTAGAAGAACTGGA
TTTTCTACAGAACTGTTTACAAGTCAACCCAAAGTCATATGGAGTATGGA
ATCACCGAATGTTCACCATGTTAAAAATGAAAACACCAAATTGGCCACGT
GAATTGAAGTTGTGTAATTTGTTCCTACAGTATGATGAAAGGAACTCGTG
GAAATGATGAATTGATGGATTCTACTTTACAACTAACACAACAAATCCTT
GCAAGCAATCCAGATGTTTATACACTGTGGAATATACGGAAAGAGATTTT
TGTGAAAAAACTTGAAGTAGTCATGGTAGACTGAAGGTGAAAACAACTGC
TCAACAGCAAGAAGAGAAGCGAAAGGAGAGGGAAAAGAAAGTCAAAATAT
TCACTGGTGCTATGAAGCAAATTTTCACACAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035596XLOC_035596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056511-exon-scaffold_276-1575043694:495274..495355TCONS_00056511-exon-scaffold_276-1575043694:495274..495355Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:494568..494678TCONS_00056511-exon-scaffold_276-1575043694:494568..494678Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:493655..493779TCONS_00056511-exon-scaffold_276-1575043694:493655..493779Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:493130..493311TCONS_00056511-exon-scaffold_276-1575043694:493130..493311Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:492325..492571TCONS_00056511-exon-scaffold_276-1575043694:492325..492571Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:491674..491757TCONS_00056511-exon-scaffold_276-1575043694:491674..491757Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:491264..491346TCONS_00056511-exon-scaffold_276-1575043694:491264..491346Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:490897..490995TCONS_00056511-exon-scaffold_276-1575043694:490897..490995Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1575043694:490438..490535TCONS_00056511-exon-scaffold_276-1575043694:490438..490535Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:495274..495355TCONS_00056511-exon-scaffold_276-1510915933:495274..495355Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:494568..494678TCONS_00056511-exon-scaffold_276-1510915933:494568..494678Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:493655..493779TCONS_00056511-exon-scaffold_276-1510915933:493655..493779Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:493130..493311TCONS_00056511-exon-scaffold_276-1510915933:493130..493311Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:492325..492571TCONS_00056511-exon-scaffold_276-1510915933:492325..492571Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:491674..491757TCONS_00056511-exon-scaffold_276-1510915933:491674..491757Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:491264..491346TCONS_00056511-exon-scaffold_276-1510915933:491264..491346Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:490897..490995TCONS_00056511-exon-scaffold_276-1510915933:490897..490995Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1510915933:490438..490535TCONS_00056511-exon-scaffold_276-1510915933:490438..490535Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:495274..495355TCONS_00056511-exon-scaffold_276-1491911889:495274..495355Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:494568..494678TCONS_00056511-exon-scaffold_276-1491911889:494568..494678Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:493655..493779TCONS_00056511-exon-scaffold_276-1491911889:493655..493779Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:493130..493311TCONS_00056511-exon-scaffold_276-1491911889:493130..493311Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:492325..492571TCONS_00056511-exon-scaffold_276-1491911889:492325..492571Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:491674..491757TCONS_00056511-exon-scaffold_276-1491911889:491674..491757Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:491264..491346TCONS_00056511-exon-scaffold_276-1491911889:491264..491346Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:490897..490995TCONS_00056511-exon-scaffold_276-1491911889:490897..490995Clytia hemisphaericaexon
TCONS_00056511-exon-scaffold_276-1491911889:490438..490535TCONS_00056511-exon-scaffold_276-1491911889:490438..490535Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056511-proteinTCONS_00056511-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:490438..495355 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.9557	39.8894	11.757	8.93177	10.3962	7.75416	16.1312	16.7114	10.772	11.8649	7.49159	7.04648	9.20786	7.22617	11.1448	9.53926	16.8006	13.7095	6.3971	7.6129	9.279	8.18014	34.0487	28.9462	8.31918	10.779	5.8247	4.95	19.7324	18.2361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a
Vocabulary: Molecular Function
TermDefinition
GO:0008318protein prenyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0018342protein prenylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018342 protein prenylation
molecular_function GO:0008318 protein prenyltransferase activity
Blast
[Close]
BLAST of TCONS_00056511 vs. Swiss-Prot (Human)
Match: PGTA (Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens GN=RABGGTA PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 1.936e-53
Identity = 103/190 (54.21%), Postives = 136/190 (71.58%), Query Frame = 2 
Query:   80 MHGRLKVKTTAXXXXXXXXXXXXXVKIFTGAMKQIFTQRGNDELMDSTLQLTQQILASNPDVYTLWNIRKEIF--VKKXXXXXXXXXXXXXXXXXXQNCLQVNPKSYGVWNHRMFTMLKMKTPNWPRELKLCNLFLQYDERNFHCWDYRRFVVRESKVPAEEELNYTTEKIKENFSNYSSWHNRSKLLPQ 643
            MHGRLKVKT+ +Q E KR ERE+K+K++  A + +F +R   EL +S L+LT QIL +NPD  TLWN R+E+   ++  +  E++  L+  EL FL++CL+VNPKSYG W+HR + + ++  PNW REL+LC  FL+ DERNFHCWDYRRFV  ++ VP  EEL +T   I  NFSNYSSWH RS LLPQ
Sbjct:    1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190

HSP 2 Score: 92.4337 bits (228), Expect = 2.177e-20
Identity = 63/131 (48.09%), Postives = 78/131 (59.54%), Query Frame = 3 
Query:  648 NFSNYSSWHNRSKLLPQVFPDES----GXXXXXXXXXXXXXXQNAFFTDPNDQSAWFYQRWLLGRRKEETRLLSLIIKRTSKTLVASFSQPVKKCDLCESCSKSGEETLLIWKPLAPTQSN-VSHTWVSEI 1025
            NFSNYSSWH RS LLPQ+ P       G++ E+ LLKE ELVQNAFFTDPNDQSAWFY RWLLGR   +  L  L + R    L  SFS+P+      E      +++ LI +   P   N  SH W+ ++
Sbjct:  174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRADPQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRPSHVWLCDL 304
The following BLAST results are available for this feature:
BLAST of TCONS_00056511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGTA1.936e-5354.21Geranylgeranyl transferase type-2 subunit alpha OS... [more]
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