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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056442 ID=TCONS_00056442|Name=TCONS_00056442|organism=Clytia hemisphaerica|type=transcript|length=2389bp
AAGAGATTGTCAAAGATTTTGGTATAAAGGTATTAACAATGTATAACGTC
GGATACCAATTATTCAACCCCGTGCACGGGCAAACTTACCCTCAAGTACA
AACTGTCATTAATGACCGTGCCCTGATCAACCAAAGACTTCAAGCACTCA
TGAATATGTCATGTTTACGCATGCGTGGATTACCATTTTCAGCTGGCCAG
AAAGACATTTTGANGTGCTCTGATCAACCAAAGACTTCAAGCACTCATGA
ATATGTCATGTTTACGCATGCGTGGATTACCATTTTCAGCTGGCCAgaaa
gacattttgaatttcttggCTAATCATGCAGACAATGTGGTCAGTGCTGT
ACACATCATTTATAACTTACAGGGACGTCCATCAGGTGAAGCATTTGTTC
AGATGAAGAACCCTGATCAAGCACACAAATGTGCTGGTGATTTACATCTC
AAACATATGGGTGAGCGATACATTGAAGTCTTCCAATGCAGTGTACAAGA
CATGACTTGGATGCTCGCCACCAGTCATGCTAACCAACTTGCATGCCAAC
ATTTGAGTCAACTTAACCACACCAAAACTCCAAAAACTTCATCCTCAAAT
AATACTACATCCCCTGCTGGTGCAAAAACGACCTTCCAGCCATCCACACC
TTCTCCACCACCACCACCCATCCTTCAGACAACACAGGCACCACCCATGA
ACGGTATCCTGACATCACCACCTCCTCCAATCACCACCAACGGGTTCTTC
CCACCTGAAGTGTCACAGCCGTTACCCATCTACACGGGACCCTTCCCTCC
GATGTTCCCTCCACTACCACAACAAGGCTTCCTGCCACCACCACCTCCCC
TACCTCCACATACATCAGGGGTTCCAGCCATACCGACTGTCATGCCACCT
ATGTACGGAGACGCTATGCAGTTCCAAATGAACCCTTTCGGTAAACCAGG
ACCAATGACATACATTGCTGTGAATTCACCTGAAGAAGCGCATAGAATCA
TTCAACATGAAAAACATATGCATAATAAATTTCTTCCAGGGAACGCTCCT
TACGTAGAAATGTTTATCGCTCATTAAATGTGATGTAAATATCCAAAGAG
ATATAACAGCTACTCTTGCCAGCCACCTGTCAAATGGCTAAAATGGCAGC
GATGTCTACTTAGAGCCGATGAGTTGAGAGCTAGTGTTAGATTGGCACAC
TAGCTAGGCTTCTGGAAGCGTTTTTTTATGCTTGTTGACGCCTCACGGTT
TCCACTTAAGTGATCAACGTCCGCCCGTCAATTCAGCGAAGAACCGACAA
CTGAGTTTGCCCACAGCTAGATAGAAACTTTTGAAGGAAATAATATGATA
CAATAACAAGTCTATCATCtgataaagattttgtttttcaaccGAGATCA
TtaattttagatgaaaaatgaaaatatgataGCCCTTGGTTGACTTATTT
TGGATCAATAATACTcacaatgttatttttttgtgtGAGAAACAATGAAT
TCAAGATTTCAATGGTAAAATGCTgagcaaattttaaaattttatctttt
tacttgttgtttttttcttaattcataatattcatgacgtaatgttttcc
acggaaagaccccggtttttgccagtagtggcaaattttatacaactttt
gcctagtttaaatttgccactactgcctaaaaccggggtatttccgtgga
aaacattacgtcatgaatatcatgaatatctaACATAAGTCTTCTAAAGT
TTAAACTtctttgaattgaaaattggtattttcaaaatattgaaaataaa
cgCCACCATATCGatgtttttagttttcttaCTGTACAATACTAACTAAA
TCAGCTAAGCCATAATTCTTCTAGGCATAATTTGTTTACGCATACCAAAA
TTGGTATTTGAAAAGTTTCtgtctgaaaattcaaaaagcgccaaattatg
atttttattttgtcatattttctaGCTTTTATTGTTTATTGTTCCAAGTT
TAGAAATTACATTTAGTTGTTTTTCAGGTTTTATCTGAAACATGCAATTC
TCTTCATTCGCAAAATTTGAGttatgaatttgaatttgaatttccttACC
CTTTGAGCTCTAAGTTCAAATAATTttccgaaaatatttttcaaattttt
ttcattttgcggAGAAGATTTTAATGACAGAAGagattaataattttttt
gttttatttttattattgtcattttattattattaatacttactatgaaa
aattatcaatttacaATTTAACATTTTGCGAAGTTATTTtactaaagaaa
gaaaaagaattatttattatttgttGCCTTTTGTGTACTATATAACAATT
GAAAGAGATAAAATACTTTGAAatacaaacaaataaaaa Run BLAST on NCBI transcript from alignment at scaffold_276:646535..653006+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056442 ID=TCONS_00056442|Name=TCONS_00056442|organism=Clytia hemisphaerica|type=transcript|length=6472bp|location=Sequence derived from alignment at scaffold_276:646535..653006+ (Clytia hemisphaerica)
AAGAGATTGTCAAAGATTTTGGTATAAAGGTACGATAAAGTACACGTTGC
CTTTGCGGTTGATTGTGTTGTTAAGATTATTATCTTCCCCTGCAGAGCTA
TGATgcatgtagctctactgtattTGAAGCTTGGCTAATACAGTTTTGTC
CGTCTGGAGATAATTTCAAATGATGGTTGTCAgaatcattgagtttcaag
cagAAGGCTAGAAAGGAATCTTAAACCTTTCCTTAGGCGAGCAAAAATGA
AGCCTTGAGATTCGCGCCGCTTTTGGAATGATGTATTGAATCtagcattt
tctttgttttctaccgcggcattattttttgaaaactgttGATAGATTTT
AAGTTTAATGTGGCGTTTGTGTGAAAGCCAGACGGGTCTCGCCTTTTGGA
TGGGAAATCGATGGCTTCATTTACAATCTAAGAGTTTCTTCTCTAGCCCT
TTAACTTGAGAGAAATCATTTAAGTTATTAACCAAACTCaactcaaaact
ttattttctgTGATATAAATCCAGggtttatttgttttttactCTTACCC
CAAAGCATGAGTTTGTTTTGTCATACagcggagtctccataactcaaacc
cGCACGAGGAACACGAACTTAAcgcgagttaaggagacatcagagttaaa
gagactctaatGTATTGACTTCTTTGTGTGCGTACGGAATCAAATCCTGT
GTCATCCATCAACTTGGAGTTTGATAATATGAGACATAAGATAGgtctta
aaaatgataatattgTTTCGTGTTTTTATTCGAGAACCCGGAAGAGTAAA
TGAAAGTaatcaaatatattttgatcGTATCAGGTGATTTAGTCAGACAG
GGAAACAAATTCTCGTAAAAACTACTAAAGCATTTTTTCTTAGAATAACA
GTTTTTTTTAGTCACTAGTTTTCTTGGTTATGAATTATGGAGCtatttga
attttattgttcTAGCTTTGATTTTCAGTCAAAATTAAATGTGTTTTCAG
TGTTGACATTATCGACAGGTTAGCATCGAAACGTGTTGTCCATGGGAAAC
ACATGAATGAGCCTATCAAACACGTTAAAatgtagacgatgctatcgtcc
gttagagggtcagtaaacgcgggaaaatataTATGTGCAGAGTTAGTGCA
GGGCGTTAGGGCGTTTACGGCAAAAAAGTAGCGGTAGagtaaacacctcc
gccactgttTACTCCGTCCCCGGGCTAACCACCGTTTTAAAGTcatccct
tttttagtgatctcgtgtagacgataggatttGCAATTGAGTCTAAAGAC
AGAAGGGTTGGAGAGGGATCTTTAACATTTCTAAAGCAAGAAAATGTGAA
ACCTTAGGGTTTGCATTAATTAATGACGTCTAGTGCTTTCTTCTGTTTTC
TCACGCGGCATATTTTTCAAGATCTGGAGATGGATTTTACTTTTGAACTG
GGGTTTATGGTGGCGTGTAACGTGTGTCTAAGTTTAAACTCAACGAGTAC
AGTATGTCCAATAGTCCATAAATGATGTCCTCTTTTTAGACAGTGCGTGT
CTAAGAATTGCCTACTTAtcattagactggagtcgtttataatgcgtgta
ataagTAGCATTGGCGTtttatgataatacgattattgttacgggattta
gtttgtataaactaaaatagactaaaattgttccctccgccattactttt
tgctttatttctactctgtctgatgaattagtcgtctagcttgctagact
aacttatcaaagattttgctgtCTTATTAATGCGCTGATcatttttctga
tgtttttacCAGGTATTAACAATGTATAACGTCGGATACCAATTATTCAA
CCCCGTGCACGGGCAAACTTACCCTCAAGTACAAACTGTCATTAATGACC
GTGCCCTGATCAACCAAAGACTTCAAGCACTCATGAATATGTCATGTTTA
CGCATGCGTGGATTACCATTTTCAGCTGGCCAGAAAGACATTTTGANGTG
CTCTGATCAACCAAAGACTTCAAGCACTCATGAATATGTCATGTTTACGC
ATGCGTGGATTACCATTTTCAGCTGGCCAgaaagacattttgaatttctt
ggCTAATCATGCAGACAATGTGGTCAGTGCTGTACACATCATTTATAACT
TACAGGTAAGGAAACtcttaattctttttttgtttttaaaatttatgtta
cccacagttgatgctctctattTTAATATTCTACTTTTCTATACACTCTA
TTGTTCGATAATAccaagtttatgtatgtgtcttttactgcgacggagac
ggtaaggttctaattggACTAAATCCTGACTGGCTGAGgatgacggtaaa
tcagcacttttaccatcCTCGATtatgcgggtcagaactgcgggttattc
caaatcgcttcagtcactttaccgttttcaaaagtgcaaatacataaact
cgctaatattgaaagtcaccctcaacaagaaactctcgtaaacaacgctc
cattattcgacacactcccttattcgattaTCAAGGGgttttcatcaaat
aagggagcgtatggaatagtagagcgtcgtttatgagagttcgTTGTTGT
TGATGGTggatttcaatattatcgattAATGGAAcatatcgaataataga
acttcgaattagagagcgtcaactgcacTTTTTTATTACAGTACATGAAA
GGGGAAGATACAAGTTTCATCTTGAAGGTCGCAAAGACCAGATTCGTGAG
AACCATGTGGAGTGTATATTCATATAAGCTCTTATCTCTTATGAATCTTT
ATTATACATTTCGGTCAACTCGACGTaaaaaacgaaagtagttgCAAACG
GCAAATCAATAAGAATAGAGATGTTAATCTGACAAATTTCCATACGTTGA
GTAgggtttttcttttcatttgattCGTATCTTATGATGTCGTtacgttt
taaagatattaacAGATTACTTTACTTAATAATATGACGAAGATAGTATC
TTTCAAGAAAAGCTTTTGTCGAATTTAGGTACTATCTTTAATACAGGAAG
CTCGAAAATAGCCCCAAGCCATAGCCCTtgcacaaaaataaacaatctac
caaaatgatttgatttttttatctaaaaatgttcctaacaaATCAATAAC
AAAAACTCCCTCATCTTTTTCCTGCTGTAAAATCTGTAACATTTATTCTA
CTGTGATTGAATGATTTCTACGGACGATAAAATCGTCGGAAAAGTAGCCT
ACCCTGAAATCTATTCGTTAAACGAGAGCTGACCGACTACCCGGTTCTAC
CCATTTCTTGATGAACTTGAACGCTACTCTAGATTTGACTTTGAGAAATC
ACTCATCAAAAGGTTTAGATAGCTGTCTTAATCACTGTTTTTGGTATGAG
AAACTATGAACAGATTTCGACCACAACTTTATCATAACATACTCGAGAAA
AGTTTGAGATTTATTTAAGATTACATTTAACAGGTTAATCAGATCAATAG
TAGAAAATGGGAAAAAgcgaaagaaaaatattcctaTGAATATTCTTATT
CCTAAAAGCTTCTTCGAGTTCAGGAAACATCCGAGTTAAAGAAATTCGGA
CTATCAGACTGCATTTTCCAACTACTTTTTCACGTTTAAAGGATATCATT
TAACGGATCACGTACCTTTGCTGACACagcattttttaagaaaaaactga
TATTTCTTTCCTCCGTGCTGCGCGAGCACAAATGTTGAGAAATTACCATT
GCCTATCTTGTCAACATAAAGAAAAGCCTCCCTTTATACAGCGGAGTCTT
GATCATTCCGAGCGCAACATTTGTGTTCACCTTGCAtgctcgagttatgg
agactctactgtttATCGTTTAAAAGAGTATcctaaaggttttgtttttg
aataagaagtggtatcgtttgcttactcgttaattttgattcacaagctt
tttcgcattggattgacacggatgtggagcaagatcagtcagaaagagga
aaagaaaaacattttttttgcttatatcaacaTAATAAAACAAgaggcag
acactgtcccgatatgaaatatgtgtctgatatgaaacgcttatgtaaaa
ataaaacctttaatctcGTAAACGACTTCAagcatttctttctttttcaa
tcacCAGGGACGTCCATCAGGTGAAGCATTTGTTCAGATGAAGAACCCTG
ATCAAGCACACAAATGTGCTGGTGATTTACATCTCAAACATATGGGTGAG
CGATACATTGAAGTCTTCCAATGCAGTGTACAAGACATGACTTGGATGCT
CGCCACCAGTCATGCTAACCAACTTGCATGCCAACATTTGAGTCAACTTA
ACCACACCAAAACTCCAAAAACTTCATCCTCAAATAATACTACATCCCCT
GCTGGTGCAAAAACGACCTTCCAGCCATCCACACCTTCTCCACCACCACC
ACCCATCCTTCAGACAACACAGGCACCACCCATGAACGGTATCCTGACAT
CACCACCTCCTCCAATCACCACCAACGGGTTCTTCCCACCTGAAGTGTCA
CAGCCGTTACCCATCTACACGGGACCCTTCCCTCCGATGTTCCCTCCACT
ACCACAACAAGGCTTCCTGCCACCACCACCTCCCCTACCTCCACATACAT
CAGGGGTTCCAGCCATACCGACTGTCATGCCACCTATGGTAAGTTTCTTC
TCCTTGCTGGAAATTCATATCTTTTGTAGGTTTTTAAATTGTAAAAGACT
TTCATCACTTATAACAGTCAAACTCTTTCTAAATTGAACGTCTATTATtc
gaataataataatattttggATCCCTCAGCTGAAAAGTGGCATAAATCAC
TCTGAATCAATCGCTTTGTAATTCCCATCTTTTTGATAATAGATAATTTG
TGGTCCCTTTGAGTTAATCGAataaaagagagagagagagtcaaTTATAT
GTTATTATTCATGACCATGTTCTTTTCTTTCTACAGTACGGAGACGCTAT
GCAGTTCCAAATGAACCCTTTCGGTAAACCAGGACCAATGACATACATTG
CTGTGAATTCACCTGAAGAAGCGCATAGAATCATTCAACATGAAAAACAT
ATGCATAATAAATTTCTTCCAGGGAACGCTCCTTACGTAGAAATGTTTAT
CGCTCATTAAATGTGATGTAAATATCCAAAGAGATATAACAGCTACTCTT
GCCAGCCACCTGTCAAATGGCTAAAATGGCAGCGATGTCTACTTAGAGCC
GATGAGTTGAGAGCTAGTGTTAGATTGGCACACTAGCTAGGCTTCTGGAA
GCGTTTTTTTATGCTTGTTGACGCCTCACGGTTTCCACTTAAGTGATCAA
CGTCCGCCCGTCAATTCAGCGAAGAACCGACAACTGAGTTTGCCCACAGC
TAGATAGAAACTTTTGAAGGAAATAATATGATACAATAACAAGTCTATCA
TCtgataaagattttgtttttcaaccGAGATCATtaattttagatgaaaa
atgaaaatatgataGCCCTTGGTTGACTTATTTTGGATCAATAATACTca
caatgttatttttttgtgtGAGAAACAATGAATTCAAGATTTCAATGGTA
AAATGCTgagcaaattttaaaattttatctttttacttgttgtttttttc
ttaattcataatattcatgacgtaatgttttccacggaaagaccccggtt
tttgccagtagtggcaaattttatacaacttttgcctagtttaaatttgc
cactactgcctaaaaccggggtatttccgtggaaaacattacgtcatgaa
tatcatgaatatctaACATAAGTCTTCTAAAGTTTAAACTtctttgaatt
gaaaattggtattttcaaaatattgaaaataaacgCCACCATATCGatgt
ttttagttttcttaCTGTACAATACTAACTAAATCAGCTAAGCCATAATT
CTTCTAGGCATAATTTGTTTACGCATACCAAAATTGGTATTTGAAAAGTT
TCtgtctgaaaattcaaaaagcgccaaattatgatttttattttgtcata
ttttctaGCTTTTATTGTTTATTGTTCCAAGTTTAGAAATTACATTTAGT
TGTTTTTCAGGTTTTATCTGAAACATGCAATTCTCTTCATTCGCAAAATT
TGAGttatgaatttgaatttgaatttccttACCCTTTGAGCTCTAAGTTC
AAATAATTttccgaaaatatttttcaaatttttttcattttgcggAGAAG
ATTTTAATGACAGAAGagattaataatttttttgttttatttttattatt
gtcattttattattattaatacttactatgaaaaattatcaatttacaAT
TTAACATTTTGCGAAGTTATTTtactaaagaaagaaaaagaattatttat
tatttgttGCCTTTTGTGTACTATATAACAATTGAAAGAGATAAAATACT
TTGAAatacaaacaaataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056442-exon-scaffold_276-1491911889:646535..646563 | TCONS_00056442-exon-scaffold_276-1491911889:646535..646563 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1510915933:646535..646563 | TCONS_00056442-exon-scaffold_276-1510915933:646535..646563 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1575043694:646535..646563 | TCONS_00056442-exon-scaffold_276-1575043694:646535..646563 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1491911889:648347..648689 | TCONS_00056442-exon-scaffold_276-1491911889:648347..648689 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1510915933:648347..648689 | TCONS_00056442-exon-scaffold_276-1510915933:648347..648689 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1575043694:648347..648689 | TCONS_00056442-exon-scaffold_276-1575043694:648347..648689 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1491911889:650692..651222 | TCONS_00056442-exon-scaffold_276-1491911889:650692..651222 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1510915933:650692..651222 | TCONS_00056442-exon-scaffold_276-1510915933:650692..651222 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1575043694:650692..651222 | TCONS_00056442-exon-scaffold_276-1575043694:650692..651222 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1491911889:651521..653006 | TCONS_00056442-exon-scaffold_276-1491911889:651521..653006 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1510915933:651521..653006 | TCONS_00056442-exon-scaffold_276-1510915933:651521..653006 | Clytia hemisphaerica | exon |
| TCONS_00056442-exon-scaffold_276-1575043694:651521..653006 | TCONS_00056442-exon-scaffold_276-1575043694:651521..653006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:646535..653006 + |
Blast
BLAST of TCONS_00056442 vs. Swiss-Prot (Human)
Match: ESRP1 (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.343e-21 Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 256 SCLRMRGLPFSAGQKDILNFLANHADNVVS-AVHIIYNLQGRPSGEAFVQMKNPDQAHKCAGDLHLKHMGERYIEVFQCSVQDMTWMLATSHANQ 537
C+R+RGLP++A +DIL+FL A ++ + VH++ N QGRPSG+AF+QMK+ D+A A H K+M +RY+EVFQCS ++M ++L N+
Sbjct: 445 DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNR 539
The following BLAST results are available for this feature:
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