TCONS_00056443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056443
Unique NameTCONS_00056443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056443 ID=TCONS_00056443|Name=TCONS_00056443|organism=Clytia hemisphaerica|type=transcript|length=3179bp
gtgggacctagaacccccttgcacactatgttcaaacttctcagaaatgg
cccgggaaaatgattttgaaagtttAGGAGTGATTCCTTTGTTAAGTATG
TTTCTCCAGATGATTGAAAATGGTAGAGCAATGTTATCTTTAGTTTTTAG
CAGAAGAATAGCTGGACAACCATCTGGTCTAGGTGCTGAAGTTTGTGACA
GTGTcaggcatcgaaataagggatagaaagtgcatcgcaattttttgata
agcatgattttgcatcctaaaatggatcaattttcaatttttagcttgta
agtaatccaaaaacgcatcgcgaattgcgaaatgcgatacgctaattcga
tccctgCAGTGTACcgatttctttgacaaattccTCGATAGTCAGATTGA
TATCTTCAAGTTTTGGAATTTGTGACTCAAGCAGATGAAGGTCGTAGTTT
TGAAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTGTAGAATATTGGC
CATCAAAAGGGGATCATCAGTCAATTTGTTAGTGTCTGGGACCAACTTTT
GGTTTAGATTTTGAGAAGGGATTAGCGTACGAGTAAAAGAATTTTAGGTT
AGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTCCCTCTCTTGAG
CAAAGgacttcaatttcaacaagtttTTCTGTAGTTTTAAGATTATCAAA
CCTTTTTCtcagtttctttctttttcgctTTAAAATTCGCCTGTCTCTTG
GTTTGCGTTTCTTctttgatgaaaatatttttggaggtACATTATTTGAA
GATATAATGAATATGCATTGTTTGATAAAAGCATCATATTGGGCGTCAGG
GTCTGAATATAGTGGGTTCAAAATTTTGTGCCAGTCAGTGTCTTTGAAAT
GTTCATTGATAATAGCCCAATCAATGCCTTATTGGCCGTAATAATGGTTT
ATGTAGGTCTCATATTCTCAAATTTGCATGTAGTAGCATTGGTCCATTGT
ATCTGtgaagtttgaaaaatataccTTTATTGGTTCAAGAGATATTAACG
AATTTCGTAGATTAGTATTGTGCGGAATAAAATTCTGTAAATTAAAACGC
ATAATTTTATTCAAGCCGATTATGCTATGTTTTTTAGATCCCTGTTTACT
TAGTATTACTgtaaagaaataagaaaaacaacaaagacCATGGCTGATGA
TTTTGATGTAGACGATCTATTGGAagcaccttttcaaaaagtgGAGAATG
GGGATGATAAAGTTCGAAAGAGTGGAAGCGAAAGCCCAGCTactgaacaa
aagaaaaaaaagaaaagGAGTAGATCAAGATCTAGAGATAGAAAAAgAAA
AAGCCGCTCAAGGTCAAGAGACAGGCGGAGAAGTCGCAGAAGCCGTTCAA
AATCAAGAGATCGAAGgaGAAGTAAATCACGTTCAAAATCACGTGAAAGG
CGTAGAAGAAGTAGAAGTCGATCACGTGACAGAAGGAGAAGTCGAAGAAG
TAGAAGCAGAACAAGGTCCCCAAGGCGCTCACCATTGAGAAGGAGATCCC
CAGATAGAGAATTTGTCCGACGAAGCTCCGATGGTGTAACAACAATTTCT
TTGCGAGGAGATCGTGACCGTGAAGATGACCACATCACGCAAGAAGAACG
TGATGCACGTACTGTCTTCATCATGCAGTTGGCACGGAATCTAACCATCC
GCGATATCCAAGATTTCTTCAGTAAAGTTGGTCAAGTTCGTGACGTCAGA
CTCATTTCAGATCGAAACTCTAGACGCTCCAAAGGAATTGGTTATGTGGA
ATTTACAGACCCTAGCGCTGTCACTTTGGCTATCAAATTGTCAGGGCAGC
GTTTGCTAGGTGTTCCCATAATGGTATCTCCAACAATGGCTGAAAAGAAC
CGTTTCGCGGCACAACAAGCTGCGGTCACCAAACCATCTGGTCCCATGAA
GTTATACGTCGGTTCTTTGCATTACAATATAACAGAGCCTATGCTTAAAG
CGATATTCGAACCGTTCGGGACCATCGACAGTGTTCAGTTACAATACGAC
AGCGAAACGAACAAATCGAAAGGTTACGGTTTCGTCAATTTCCAAGATTC
CGTGGCCGCCAAACGTGCCATGGAACAGATGAACGGATTTGAACTAGTTG
GCCGACCAATCAAAGTGAACACAGTATCAGAGCGGTCTGATGGCTCCATG
TCTTTCCTTGATGATGAAGAGACAGAGAAAGGTGGTATTGAAATGAACGC
ACAGTCCAGAGCCTCGTTGATGCAAAAGCTGGCACAAACACATGGTTCAG
GAATGCAAGTACCACAAGTTCAACAAGTTTCAGGAATGTTGTCTTCACCT
TTGTTACCTCTTGGTGGAAGCACGTGTTTAATTCTATCAAACCTCTTCGA
CCCTACAAAAGAAACCGATCAAGATTGGGAAATGGATTACAGAAACGACG
TCTTGGAAGAAGTAACAAAACATGGAATTGTAGTTCACATCTCTGTTGAT
ACTATCAGCCCAGAGGGCAACATTTATTTGAAGTGTTTAACGGCAGACGT
GGCAAGTAAAATCGTCCAATCGTTTAACGGTCGTTTCTTTGCTGGCCGCA
CCATTCGTGCGACGCCTGTACCCACTGCCAATTACCATACCATGTTTGCT
GATTCCGTGAATGCTGTAAGACCTTTGAAACCTGATTCTTGAGCATTCAA
TAAGCCTTGATTGGTGATCTAAATGATGATTGTGTACAGTAATGAAATGA
CTTTTAATGAGGAAAAAAGACATCGAAATAAACTTAGTTTAATAATGGGA
CACAAGAAATTATCCAACTGCCAACTGACTCTTTCATAAAGCTCAAAGAC
ACGTGGTTATTTTGATATAATGAGtcaattttctttatcagtaggaaaaa
gaaaaaaagatactAGGCTCTGTACCACGTGACAGTACAGAATCGAAATG
TTCATGTAAAACTGAATGCATGATTTATTGGGATCATGGActgattattt
tttctttatattgaAAAGTTCTGGTTTGATTATGAGTCGCAATCTTTGTT
ATATTATTATCATTGTAAAATATGAAGTTTTTATGAAATACCTATACTCT
TTGACAGGCTACATTTGTTACTCTCCTTTTTCTTTTAGTTATCTTTCTTG
ATTCAAATttaggctcttccagaaaatga
Run BLAST on NCBI

transcript from alignment at scaffold_276:666266..679583+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056443 ID=TCONS_00056443|Name=TCONS_00056443|organism=Clytia hemisphaerica|type=transcript|length=13318bp|location=Sequence derived from alignment at scaffold_276:666266..679583+ (Clytia hemisphaerica)
gtgggacctagaacccccttgcacactatgttcaaacttctcagaaatgg
cccgggaaaatgattttgaaagtttAGGAGTGATTCCTTTGTTAAGTATG
TTTCTCCAGATGATTGAAAATGGTAGAGCAATGTTATCTTTAGTTTTTAG
CAGAAGAATAGCTGGACAACCATCTGGTCTAGGTGCTGAAGTTTGTGACA
GTGTcaggcatcgaaataagggatagaaagtgcatcgcaattttttgata
agcatgattttgcatcctaaaatggatcaattttcaatttttagcttgta
agtaatccaaaaacgcatcgcgaattgcgaaatgcgatacgctaattcga
tccctgCAGTGTACcgatttctttgacaaattccTCGATAGTCAGATTGA
TATCTTCAAGTTTTGGAATTTGTGACTCAAGCAGATGAAGGTCGTAGTTT
TGAAGAGGTTGGGTGAAGACAGACTTGTATTGGTTTTGTAGAATATTGGC
CATCAAAAGGGGATCATCAGTCAATTTGTTAGTGTCTGGGACCAACTTTT
GGTTTAGATTTTGAGAAGGGATTAGCGTACGAGTAAAAGAATTTTAGGTT
AGATTTGATTTTAGAGGTTGCTTGAGCTTCTTTCTGTTCCCTCTCTTGAG
CAAAGgacttcaatttcaacaagtttTTCTGTAGTTTTAAGATTATCAAA
CCTTTTTCtcagtttctttctttttcgctTTAAAATTCGCCTGTCTCTTG
GTTTGCGTTTCTTctttgatgaaaatatttttggaggtACATTATTTGAA
GATATAATGAATATGCATTGTTTGATAAAAGCATCATATTGGGCGTCAGG
GTCTGAATATAGTGGGTTCAAAATTTTGTGCCAGTCAGTGTCTTTGAAAT
GTTCATTGATAATAGCCCAATCAATGCCTTATTGGCCGTAATAATGGTTT
ATGTAGGTCTCATATTCTCAAATTTGCATGTAGTAGCATTGGTCCATTGT
ATCTGtgaagtttgaaaaatataccTTTATTGGTTCAAGAGATATTAACG
AATTTCGTAGATTAGTATTGTGCGGAATAAAATTCTGTAAATTAAAACGC
ATAATTTTATTCAAGCCGATTATGCTATGTTTTTTAGATCCCTGTTTACT
TAGTATTACTgtaaagaaataagaaaaacaacaaagacCATGGCTGATGA
TTTTGATGTAGACGATCTATTGGAagcaccttttcaaaaagtggtAAGCA
AACATTTGAACAATATTATTCCTTGAGTTGCtgatttttcttactttttg
cctaacaaaaacaaaaagatatttaaaataACTCATCTGTGTGTTGAAAA
AATTCCtccgtttttttttacaaattttctacacaaattttacaattttt
gcacaaagatgcataactataaaccctcgaatgtgatggagcccgatttt
ctaaaaaaaaattttttggccaaatttgggctaaaaaacggctaaaaaac
aggtttgaATTGGAtcattagctttttctgattttttgcatgaaagtagg
gtaccatcataggtaaaaatgtttatctataagaatcacttttaataagc
atacatcaatgttcttagttaaattactcaatttttttatgagatatatg
tttttttgctcacgagggcttacttttgaagaatgtgtgtgtttagacat
aaaAAATTGGTTTCTTggtgtgtttttatagaaaaactggccaaattcga
tatttatttataagcacatcaattacttaggtactgtattagcttttctc
gagattggatctttgattctttatgattttttgcacaaagatgcataact
ataaaccctcgaatgtgatggagcccgaatttcgaaaaaaaaaatttggg
ggcaaatttgggccaaaaaaccgctaaaaaacaggttttttggtctttgt
gaaaaattggattattaactttttctgattttttgcatgaaagtagggtg
cCATCAtgggtaaaagatggctcaagcagattttttcaaaaaaattttgt
tggctcaaataacccatgtttatctataagaatcactattaataagcata
catcaatgttcttagccaaattactcaattttttgatgagatgttttttt
tgctcacaaagtcttatATATATAAGtatgaaaattataaatatgaaaga
atatttcaagattatgaaattttggtttttaaaccttttttttataagaa
acaaacgactaattttgatagattgtcactatttgtgttctgaatgattg
tttaatggtcacgctcacgtagatatcaattatatatgtgttaaaatgca
taaccaggtaggtgcataaaagtatcacttgtttgacTTTTGCTTAATGT
TTGATTTTAGGAGAATGGGGATGATAAAGTTCGAAAGAGTGGAAGCGAAA
GCCCAGCTactgaacaaaagaaaaaaaagaaaaggtattGTAGAAAATAT
AAATATGATATCTGAACTCTTTTCATCTAAAGTACTACTAATAAGTCCTT
CCCGTTCTATTGAATTTGCATACTCGTGTGGTActaaaaaatttaccaaa
acatGGATAAAGGAATATTTGAAAATACTATCCTTTTTTATAACACTGCA
AATCGAATGATGGAGACAAATTTTAGATGGAAGCAAATATTTAGACAGAG
AGACAGTATATATTGATATGGGGATGTATTTTGATGCaaggttttctttg
ttttttctagATCCCTTGGTTTTCACAATGGATACAAATACTGATGTATT
CTTTTATGAACTGTCTttgatttaaagaaatttatcgCCTCTCAACTGAA
AAATTCGCAATTAGGGTTTTAAATTCTAATCAAACCCTTGAAGACCTCAA
AGATCTCACACCCCTAACTACAAAGAAATTAACTTTTAGACCTGTCAATA
TTGACTTGGTGTAAGTGAATGTGCACTGTAAAATACAAATGGTCTACCCC
CATAATATACCCTAAAAGCCTATAGGATACACACATAACCTAGCAGCCAA
ACCATTTACCAATGCTTCAATCTNTCTCAACTGAAAAATTCGCAATTAGG
GTTTTAAATTCTAATCAAACCCTTGAAGACCTCAAAGACCTCACACCCCT
AACTACAAAGAAATTAACTTTTAGACCTGTCAATATTGACTTGGTGTAAG
TGAATGTGCACTGTAAAATACAAATGGTCTACCCCCATAATATACCCTAA
AAGCCTATAGGATACACACATAACCTAGCAGCCAAACCATTTACCAATGC
TTCAATCTGGCTTTATAATCTAAACTAGCTTTATTCTTGTTTAGGTACCA
GACTTTTTATTAAATGTAGGTTTGATTGAAGTGCAGAAGAGCCTTTGTTA
TTCTACACGCAACCGGAAAGGAGTGTAAAAATGCTAAGAGGTTTATAAAA
TTTACTTGCTggtgaataaaaaacaaacagaaaaatttatttaactCTGG
GTTTCAGTTTGCAGTttacatttttaaatttgagtaatttcagTAATTTT
GTCTGACAGGCAAGACCAATTTGATTCCTAgtttaaagttttgaaaactt
aGTCAGTTAATGGTTTTGCAACGTTCAAAGTGGAAAATAAGATCAAAGCT
TAGGAGGCAAACAAAAGTGAATATAATAGGAAATAGCATCCATCCATCTC
TATTATTCACAATAGACAGTAAAATTGGTCTTgccttttcaaaaatcaaa
tattttgtgcTTAAAATAACTTAAAAAGTGACTGCATTCTGAAACCCTTA
GGCACAGAACAGGTTTTAGTCGTGAATTAACATTTCTATCACTTGTCTCT
TTCAGGAGTAGATCAAGATCTAGAGATAGAAAAAggtatttaaaaatttt
atccCATCAAAAATATGTTTCTATTCATCAAAATAATGATGAGCTACAAT
CTACAATTTCTgcatatttttttacaatttgtCAGATGTCATGTCAGATT
ATTACCACTATCCCTTTTTTTCTACATAATTATCcaggaatttttttgaa
aataaatatttcttctTTCATACCCCTTCAAGAAAAAAAGGATGATTGTA
AGGTAAAGCATGACACTTATAAACCCtttattttaaatattacaGAAAAA
GCCGCTCAAGGTCAAGAGACAGGCGGAGAAGGTAAATTAATATTTCATTC
ACTTTCTTTTGGCATATGGCTACGCCTTTTTCAGTCCAACTAATTTCTGA
TTATGCccatatttcaaattttcataaccGATAGGACAATACTACAAGGA
TATTCAAAAACTATTAGTCTGGCAATGTTATGAATTTTGAGCATTTATTT
CAGCTGTTGTTAATCTTACTCAATCTCCACTCTTTTTTAGTCGCAGAAGC
CGTTCAAAATCAAGAGATCGAAGGTAATAGAATCAAACATACAATTTGTT
CACTTGGTCTTCAAGAATTTATTGAATCCTTAGTATATTTACACATGATC
CCCTCCAAATGCTACAAATCCATTTCCATTTATGTAGTATTTTAAATCTG
CACTCTAGATTAACTAATGGCGGATAGATTAATTAGTTTTTTGTCTAAAA
ATAGGCGTTTTAGcccctttttttcattttggtaagACCTAATTTTTGGT
TGATTTCGGCTTGACAAAAAGAGGGTCTTTAAAAGATGTTAAGCACGCGG
TGCATCTTAGTTAGTACTACCAATTATTAGGAAGGTATTATgattctttt
tcttatttttttcaggaGAAGTAAATCACGTTCAAAATCACGTGAAAGGC
GTAGAAGAAGTAGAAGTCGATCACGTGACAGAAGGTAGTCTAAATATGAT
TTTCAAATGTTCTTCAAAGTCAGCGGGCTCTGGCATATCCCTTTTGTATT
TTGTGAAGCCTTATTCAGAGTCCACTCAAAGATGGTGAATCCCTGATGAT
TGTTAGCAAGAAACTTGAAGTGCTACATTTAAGAAAGTAGCGATAAAGGT
GGGTTTGTTTCACCAAAGACAGTGCTCTACGTAAAGGAGCAATACAATAA
TGATgagtcaaaactttttttaaaatgtagaacttaaagtattaaaattt
tattttttctaattacTCATTAATTTTACGACTTGTCGATTCTAGCaatg
tttgaattttgaattttttcaattagATCAAACTTGTATCAtatgtagct
gatgattgtaagcatgaaactttaagttTTGACTCATCATTATTACATTT
AAGATAgaaagttttgacatattttatattatatacaCTCTATGAAGTGC
ACTGTCTTTGATGATACAAACCCACCTCTATTCATACTGAACCCCTCTGT
AAAACTTGTAACTATTACGTAACAGCTAATACGTTGTCATTAGAACTGAG
GTCTGACTTATGCATTTTTGGTTCTAGTGAATTAGAAAGTCTTTTCGATC
TTTTTCAGGAGAAGTCGAAGAAGTAGAAGCAGAACAAGGTCCCCAAGGCG
CTCACCATTGAGAAGGAGATCCCCAGATAGAGAATTGTAAGTCAAGTCCG
TGTCTGGCTTGTGCTTTAATGTGCCAATAATCAGTTAACAACTTGTGTTT
ATTCCTGTAATGTCTCCCACCTCACCATCCCTCCTCactgatcttttttt
ttcaacctttaACTTCGATTTCTTAGTGTTGTGAAACCTTAACTGATTAT
ATCGATACCCTAAACCGAACTGAAAAGAACGAAACAATATTGGGAGACAT
TATAGGAATTAGTTATTCTAATTCACTAGAACAAAAAATAGATCAGTCAG
ACCTCAGTTCTAATGACAAcgtattggaactaattttcgtgagaattaat
tttagcgtttttcgcggtttttcgtcaaagtCGCGAACATTTGAACCCGC
AAAAAAATTTGAGAGTTAAAAACAACGAAAATTGATTCCTGCGagataca
attttttccaattttattaaaaaatttcaaaaatccctaggaaatttgtc
caaaaaagggcaaaaccgcgaaaattaaaactcgtgaaatgcaatttttc
ggatattttttttcgaccatgaaaattagttccaataaggtatctCCTAC
CATTTCCTTACGAGGAATTTTTGAACCTACTCCCCCGCAATGTACCAGAA
CATTATTCTGTTAATCCTGCATTGTCAACATAGAGGCGTGCCTTCATTCT
ATATCATGAAAAATTGGtatctttttaaaagtttttattcGTCAACTTTT
CTTGACTGTCTGCGGTTGTTGGGAATGTACCCTCgtccgggtcaacccat
gccatgtgaggggataTGCCTGGCTTTGTGGTGAGTCGTTCGAGTATAAT
TACTATACACCAGCAGCTCGATGTGTCCCGAGCACGAGTTGGCAGGGTCA
GGAAAGCACAGTCCTATCCTAGGATAGTGAATGTTGTCCTGGATAGGGCC
TGTTCCGTCTATCGGAAGGTTAATCCATCTTTCTCGCTACAGTTGTCGAG
CACAAGGTATTTTGCCCTTACCAATCGATGCTCTTCTAATGTATtactct
ttttggacctacctggaggtcctataaattaacctttgttcgtccgtccg
tccgtccgtctgtccgtccgtccgtccgtctgttaccagcttttctcaag
attggctcattagttttttctgatttttgtcacaaagatgcaaaatggca
atgcccaaaatgtgacggagcccgattttcgaaaaaaaaaattttccggc
caaaaatgccggaaatatgccggaaaaaccagttttttgacattttctcg
agatttcatcataagttttcaaaacatgacagagttcgattttttgagaa
aattctttttccggccgaaatgccgaaaatgccggaaatatgttGGAAAT
CGctgattttgcagattttcattgggctttttcctaacatttctttgttt
tttctaaaaaaaaacatcattgataGCAATTCCCACTATCATtcatgatt
cgattgtcaataaaactgattttttttctcgaagaagaaaatgtcactgt
agagcgcgatggtttgagttttctagaaaccttatttattaagctgtata
tttttctgaaagtggattgtttttataaagaaaagcgtttaatagttttt
tagctttttcaatAGGGTTGATAATTTCTCCCAATAGACACGctttcatt
gtatattttttattttgtccagttatgtcttatgtgtttcattgtttcaa
ttttcattgattagttttgataaccaggtaggtccataaaagtatcactt
gtttcattTCAAAGTGTCCGACGAAGCTCCGATGGTGTAACAACAATTTC
TTTGCGAGGAGAGTAAGTAGTAACGCTATGTTTTAAATTGCTTATTTGGG
TTCTAGAAAgaaatgtcttcttttttttattatttaattttctaaaagaa
aacaaaaataactcCTTGAAGATTTTTACAAACAGCGTGATTCTGATCGA
TTACTTTCTAACAACTTGCTAGTATGCTTGCTTATCAGTCTTcatacaaa
aaaatcaagaaaaaagaaaaaccaatCTATTCTGAAAGAAGCTTTCTGCC
AGCCTTATTAttgatgattattttttttcaatttatttcagTCGTGACCG
TGAAGATGACCACATCACGCAAGAAGAACGTGATGCACGTACTGTCTTCA
TCATGCAGTTGGCACGGAATCTAACCATCCGCGATATCCAAGATTTCTTC
AGTAAAGTTGGTCAAGTTCGTGACGTCAGACTCATTTCAGATCGAAACTC
TAGACGCTCCAAAGGAATTGGTTATGTGGAATTTACAGACCCTAGCGCTG
TCACTTTGGTAAGTCATGTATCTTTCTGAACCACAATCTGATATTCCAAT
CATGTTTTTGTGATCGCttacaaagaaatattttaatggGTTGTTTTTCA
AATTGGATGTTATTGGTAGCTTGGAtgacgagatttacgtttgacTACGT
CTCGAGAGATTCTTCTTCCAGCATCGGGCAAGGTTGAGAATGTTTTCTCC
GCAATTTGTACTAAAACCTTCTGATTACCCATAAATTATCAAGAGCAATT
CTCTTTAGTTCAATCAAGGAGGAAAAGGTTAAATTCGAATACATCGAAAT
GTTAAACGCTCGCCCTTGTGTCACATCTATTATTAACCTAATAATTCGAA
CCAACCCTATAATTTGACTAATCTAAAAAGTCTTCACATACTTATTTNTC
TAGTATTAACCTAATAATTCGAACCAACCCTATAATTTGACTAATCTAAA
AAGTCTTCGCATACTTATTGAACCAAACATCTTTTCTTCATATTTCAGGC
TATCAAATTGTCAGGGCAGCGTTTGCTAGGTGTTCCCATAATGGTATCTC
CAACAATGGCTGAAAAGAACCGTTTCGCGGCACAACAAGCTGCGGTCACC
AAACCATCTGGTCCCATGAAGTTATACGTCGGTTCTTTGCATTACAATAT
AACAGAGCCTATGCTTAAAGCGATATTCGAACCGTTCGGGACCATCGACA
GTGTTCAGTTACAATACGACAGCGAAACGAACAAATCGAAAGGTTACGGT
TTCGTCAATTTCCAAGATTCCGTGGCCGCCAAACGTGCCATGGAACAGAT
GAACGGATTTGAACTAGTTGGCCGACCAATCAAAGTGAACACAGTATCAG
AGCGGTCTGATGGCTCCATGTCTTTCCTTGATGATGAAGAGACAGAGAAA
GGTGGTATTGAAATGAACGCACAGTCCAGAGCCTCGTTGATGCAAAAGCT
GGCACAAACACATGGTTCAGGTGAGTCAATATATCCTAGATAAACTCTAA
AGCTTTTCATTTTATAAACTTGAGTTTTCCTTCCAATAATCATTCTTTAT
ACCATGTGTCTAGAAACAGAGCGGAATGGATTCTTATAAATCACAACTTA
AATTCACAAAAGCAACAGTCACGTAGTAGTGAAGTAGATATGATTCTCCA
CTCTTCGGTTCCCATTCGGTGCTACGATTcagtgaatgtaccttcgcccT
GGTCGACCCCTACCATGCGAGGGGAATTTGGTAGAAGAGTGTGGGGAGGT
ATGTCAAACATTGCAACTGGGGCGGTGACTTTGCTTGcattaattcatga
tatgcaccgttGCATTGGTTGAAAATAACGTAttaactgattttacgtca
cttacaaccaatcagctagatgtaatgtcagaagatatTGCTCGCTCTAC
CATCTTGTCAACCCCGCGCTCTTCATCATTCTTTAAGAAATCTTAAATGG
GAAAAAGACccggggggcactgggtttgccaactgacggtatgtgcggcg
aaaaaattggcttttaaaatcgcacccttacagtgtagcaAAAAACGCCG
AAATTCCGtcaaattcatacccttacaaattttcaatccttttagagcaa
aaaaattaatttttccttgaattactataatttccacccttacagtgcat
ttaacAAAAAGTCTACCCTTACAGCGCATTTCTGCTATCTTGAAAAATAG
ACCCTTagccgccgcacatacccgtcggtcaatttgcctggctgcccccc
cccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
gccccccccccccccccagggaaAAAGACAATGGCAACAGACCCTTTttt
gcaatgaattttgaaattagccgtagatatcgggtctgtgcACAGATAAA
GGGTTAAAGGGATAAGGCCTATACAGTTCGCATCGGCAGGATTTCATTTG
AATTGAAATCCACAGAATgagtttgaaatgtttttcagGTGTTCCAAAGT
AAGCGACTCggtgaaaatttatttgaaaacctttgtaatctttttggatt
tcttttATAGGAATGCAAGTACCACAAGTTCAACAAGTTTCAGGAATGTT
GTCTTCACCTTTGTTACCTCTTGGTGGAAGCACGTGTTTAATTCTATCAA
ACCTCTTCGACCCTACAAAGTGAGAACCCTGTCTCCTGTTGTGTAGATTC
TTTTTCCTGATTAGTGCATACTGTAATTTCGAAATAAAACATCTCGACGA
TGATCTattcaaaaattgtcaattttcattCTTTGGAAAGAAGTTTCGTG
CTGCTATGgaaactactttaggcgtacaaactttcgcgagcagaaacttt
cgcgaggtcgaaaaatcgcaaaatctacgacatttactttcgcaaatttg
acaaaaaaaattttcgcgagaaactttcgcgaatgaggTATATTTTTAGT
AGAAAATTCAAGTTTTCGGCGCATAAAACTAGTGTTTTGATCGTTCAAAT
GTATTCAAACAACAATTGATGGACTTTTGCTTAGTATCTTCACTAAATTT
TATCCTTGTTATCATCaaagaggaaaatttgagtgaatttccttttcaga
ttttttttcgcgagcataaactttctcAAATTACCctctcaagaattttc
aagatatttactttcgcgaaaagggctaaaattcgcgaaaatcgcgaaag
tttctgctcgcgaaagtttgttcGCCTAATGAAAACCGTTATTCCCGTTG
CCAAAGATAGCGAAGGACCTTTAGATTTGATATAATattagtgtgcaaaa
tttcaaaattaaaataccATTTGCAATGTTTACATGTTGTTTATTTGAGC
AAAACTTCTTCACTAAAAGGGTcaattgaaagtgaaaaaaaatcagaaaa
aatttgatcTTCGAAAACTTACTTGCTGGTGAACTTCAACTAATTGTTTT
CTTGTTCCATCTTTTTTCAGAGAAACCGATCAAGATTGGGAAATGGATTA
CAGAAACGACGTCTTGGAAGAAGTAACAAAACATGGAATTGTAGTTCACA
TCTCTGTTGATACTATCAGCCCAGAGGTATGAATTCATTTAGTTGTTTTA
ACCAACGTAATGGGCCAAAGCCTAACCTAGGACCTGACCACAAATGATAG
TGATTGGAAATTTTAATGTATTCACGAGGGcagtcggaaccactacatgg
aaaaggcaactattgccttagcgggaaatatttcccgaacaacgggaagg
tggaaaacttcccgaaatggTTAGACTTTCCAAATCGGGAAGTTCACCAG
TTTTCTGATCGGGAAAGTGACCTCTGAGCACTCTGAAAATGCCTgtgaaa
agtttaaaatttgtcCCTCTTGTGAAGGagggaaaataaataatattcac
caggtagttaagaaatccaccTGGTAACCGCTTCTTGattctactttccc
cattcccaattaaaaacttccctaTTAGGAAACtttttctcgatcgggaa
acaaaaatctgctttgtttacaaaaattctatttcccgttcggggacgat
gaaaagttcttgaccaaaacgggaaacagaaaagtTATGAAATTctcaat
ctggaaacagtttcctGTTCGGGTTATTTTCACCCCACCGTTCGGGAAaa
atttcccgttaaggcaatagttgttTCATGTAGTGGTACCGACTGGAGGA
GGCAGGATCCACTGCTAAGGCATTTCAGTTTGTTGTGGGATCCTTTTTTG
GTTTTGTCTCTTACTTAAACACTGCAGCTTGGCAAGTTGTGTAAAGAAAC
AGCCAACCAAGTAGACCTAGCACATAGTCAGTCGGAACCACTTCATAGAA
ATGgcatttcccgaacgggaaggtgaaaataacccaaaaaggaaactgtt
tccagattgaaaatttcatcacttttcagTTTCCGGTTttggtcaagaac
ttttcattgttcccgaacgggaagttgaatttttgtaaacaaagcagatt
tttgtttcccgatcgagaagaagtttccaaatagggaagtttttaattgg
gaatggggaaagtagaatCAAGAAGCGATTACCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTATTTACCTTCCACGACCATTTCCGGAGTGCGCAGAAGTCac
attcccgatcgggaaactggTTAACTTCCTGATTCGGAAACTCTAtccat
ttcgggaagtttttcaccttcccgctcgggaaatatttcctgttaaggca
atagttgccatttctatgtagtACAGTTGTTGTAATTGAAGAGAAAGCAC
TCATACGACAGATTACAGAGCCTACGCCTGTCAGTGTATTAAACATTTGT
TCAGTGAACCTGCTAGCTAGTACACAAGAATACTGagtgtaaaaaaagga
agaatatATCCATTGTTGGAAGTGGCTAAATCAACTTTCCTGCAAAGGTC
GTTTTTGACAATAACCCGTTCTTTATCATTTCCTTTTTGAAACTTGATAA
TAATTGTAAAAGTATTTCGTGAGAAAACCATTTTATTGCTGTTCTCTTTT
TCAGGGCAACATTTATTTGAAGTGTTTAACGGCAGACGTGGCAAGTAAAA
TCGTCCAATCGTTTAACGGTCGTTTCTTTGCTGGCCGCACCATTCGTGCG
ACGCCTGTACCCACTGCCAATTACCATACCATGTTTGCTGATTCCGTGAA
TGCTGTAAGACCTTTGAAACCTGATTCTTGAGCATTCAATAAGCCTTGAT
TGGTGATCTAAATGATGATTGTGTACAGTAATGAAATGACTTTTAATGAG
GAAAAAAGACATCGAAATAAACTTAGTTTAATAATGGGACACAAGAAATT
ATCCAACTGCCAACTGACTCTTTCATAAAGCTCAAAGACACGTGGTTATT
TTGATATAATGAGtcaattttctttatcagtaggaaaaagaaaaaaagat
actAGGCTCTGTACCACGTGACAGTACAGAATCGAAATGTTCATGTAAAA
CTGAATGCATGATTTATTGGGATCATGGActgattattttttctttatat
tgaAAAGTTCTGGTTTGATTATGAGTCGCAATCTTTGTTATATTATTATC
ATTGTAAAATATGAAGTTTTTATGAAATACCTATACTCTTTGACAGGCTA
CATTTGTTACTCTCCTTTTTCTTTTAGTTATCTTTCTTGATTCAAATtta
ggctcttccagaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035571XLOC_035571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056443-exon-scaffold_276-1491911889:666266..667508TCONS_00056443-exon-scaffold_276-1491911889:666266..667508Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:666266..667508TCONS_00056443-exon-scaffold_276-1510915933:666266..667508Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:666266..667508TCONS_00056443-exon-scaffold_276-1575043694:666266..667508Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:668676..668749TCONS_00056443-exon-scaffold_276-1491911889:668676..668749Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:668676..668749TCONS_00056443-exon-scaffold_276-1510915933:668676..668749Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:668676..668749TCONS_00056443-exon-scaffold_276-1575043694:668676..668749Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:670121..670150TCONS_00056443-exon-scaffold_276-1491911889:670121..670150Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:670121..670150TCONS_00056443-exon-scaffold_276-1510915933:670121..670150Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:670121..670150TCONS_00056443-exon-scaffold_276-1575043694:670121..670150Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:670411..670446TCONS_00056443-exon-scaffold_276-1491911889:670411..670446Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:670411..670446TCONS_00056443-exon-scaffold_276-1510915933:670411..670446Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:670411..670446TCONS_00056443-exon-scaffold_276-1575043694:670411..670446Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:670656..670688TCONS_00056443-exon-scaffold_276-1491911889:670656..670688Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:670656..670688TCONS_00056443-exon-scaffold_276-1510915933:670656..670688Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:670656..670688TCONS_00056443-exon-scaffold_276-1575043694:670656..670688Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:671031..671099TCONS_00056443-exon-scaffold_276-1491911889:671031..671099Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:671031..671099TCONS_00056443-exon-scaffold_276-1510915933:671031..671099Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:671031..671099TCONS_00056443-exon-scaffold_276-1575043694:671031..671099Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:671724..671801TCONS_00056443-exon-scaffold_276-1491911889:671724..671801Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:671724..671801TCONS_00056443-exon-scaffold_276-1510915933:671724..671801Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:671724..671801TCONS_00056443-exon-scaffold_276-1575043694:671724..671801Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:673580..673627TCONS_00056443-exon-scaffold_276-1491911889:673580..673627Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:673580..673627TCONS_00056443-exon-scaffold_276-1510915933:673580..673627Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:673580..673627TCONS_00056443-exon-scaffold_276-1575043694:673580..673627Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:673907..674123TCONS_00056443-exon-scaffold_276-1491911889:673907..674123Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:673907..674123TCONS_00056443-exon-scaffold_276-1510915933:673907..674123Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:673907..674123TCONS_00056443-exon-scaffold_276-1575043694:673907..674123Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:674614..675085TCONS_00056443-exon-scaffold_276-1491911889:674614..675085Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:674614..675085TCONS_00056443-exon-scaffold_276-1510915933:674614..675085Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:674614..675085TCONS_00056443-exon-scaffold_276-1575043694:674614..675085Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:676276..676384TCONS_00056443-exon-scaffold_276-1491911889:676276..676384Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:676276..676384TCONS_00056443-exon-scaffold_276-1510915933:676276..676384Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:676276..676384TCONS_00056443-exon-scaffold_276-1575043694:676276..676384Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:677186..677291TCONS_00056443-exon-scaffold_276-1491911889:677186..677291Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:677186..677291TCONS_00056443-exon-scaffold_276-1510915933:677186..677291Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:677186..677291TCONS_00056443-exon-scaffold_276-1575043694:677186..677291Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1491911889:678920..679583TCONS_00056443-exon-scaffold_276-1491911889:678920..679583Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1510915933:678920..679583TCONS_00056443-exon-scaffold_276-1510915933:678920..679583Clytia hemisphaericaexon
TCONS_00056443-exon-scaffold_276-1575043694:678920..679583TCONS_00056443-exon-scaffold_276-1575043694:678920..679583Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:666266..679583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.92859	8.00047	15.4616	17.5531	17.8666	12.3796	9.8429	12.54	3.86906	4.94107	4.54448	3.81527	2.70645	3.13271	3.2415	3.37109	4.82118	3.984	1.41119	2.00334	5.28046	5.1551	6.0971	6.43984	6.00736	6.5189	3.27314	2.71039	4.9414	4.71727
Blast
[Close]
BLAST of TCONS_00056443 vs. Swiss-Prot (Human)
Match: RBM39 (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 7.513e-115
Identity = 192/387 (49.61%), Postives = 251/387 (64.86%), Query Frame = 2 
Query: 1628 DHITQEERDARTVFIMQLARNLTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGIGYVEFTDPSAVTLAIKLSGQRLLGVPIMVSPTMAEKNRFAAQQAAVTKPS-GPMKLYVGSLHYNITEPMLKAIFEPFGTIDSVQLQYDSETNKSKGYGFVNFQDSVAAKRAMEQMNGFELVGRPIKVNTVSERSDGS--MSFLDDEETEKGGIEMNAQSRASLMQKLAQTHGSGMQVPQVQQVXXXXXXXXX--------------------------------XXXXXTCLILSNLFDPTKETDQDWEMDYRNDVLEEVTKHGIVVHISVDTISPEGNIYLKCLTADVASKIVQSFNGRFFAGRTIRATPVPTANYHTMFADSVNAVRPLKP 2683
            D++T EERDARTVF MQLA  +  RD+++FFS VG+VRDVR+ISDRNSRRSKGI YVEF D S+V LAI L+GQR+LGVPI+V  + AEKNR AA    + K S GPM+LYVGSLH+NITE ML+ IFEPFG I+S+QL  DSET +SKGYGF+ F DS  AK+A+EQ+NGFEL GRP+KV  V+ER+D S   SFLD +E E+ GI++    R  LM +LA+  G+G+Q+P   Q +  +S  L                                     + C  LSN+F+P  E +  W+ + ++DV+EE  KHG V+HI VD  S +GN+Y+KC +   A   V + +GR+FAG+ I A  VP   YH +F DS+ A + L P
Sbjct:  143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAE--GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVP 527
The following BLAST results are available for this feature:
BLAST of TCONS_00056443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM397.513e-11549.61RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
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