TCONS_00056458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056458
Unique NameTCONS_00056458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056458 ID=TCONS_00056458|Name=TCONS_00056458|organism=Clytia hemisphaerica|type=transcript|length=969bp
TTGTTGCTCATTGTCATGCCAACCACAATAATGGGAAGAACAATACCACA
ACAAGCAACCAATCACAGTCATCCAAACGCTACCATCTTCCTCCATCAAC
CAATGAGAATGGATTACCATTTGTACGGCAACCGACTTCGATGAAGAAAG
ATGTGATTTATGAGCCATTAGAAAGGATGTCATTGGATGATGAAGATGAC
AACGAAGAGGAAGATGATGGAgatgataatgatgatgatgatgaagaggA
TTCAAAGAGAGACATTCTGTTAATTCCTGGTAGCGATGCTGCCACCGCTC
CTATGCAGCAAGTCATGCAAGTTATCGgTAACAGTTTGGCAAACAGTGAG
GCTCAGACACCATCCATCGCATCTAACATGGTTCCGATCAACCTCTCTGG
ATCAAGAAGAAACACCAAACCTGTCATCGTCAAATACGTACGAGCGCCTC
CTACCACGCAGTATTACACAACTGTGGACGAAAGGAGTGAGGGCGGCGAG
GCTGAAGTGGGCGGCGAAAGGACTACGACCGCAAGCGCCGCCGCTGCTTC
TCAAGTTATGGAAAATCCAGGTTTTGGTCGTGAGAAGATTCACCAGACAA
TGTACAACGATGTAGATGTTGACCAATTAAAAGCTGCCCAACAAATGCAA
GACAGTGAAGAATCGATGATCACTAAATTGATTGGTACACCACCCAACGG
AGTAACAAGATCATCTTCACAACAACAACCGCCCTCCAATAAATGGGCGT
CCTCACAATATCTTCAACAACCGGAATCTCCAACTGACGGCGCTTATACT
GCTAGttattcagataatattgatagTGCGCTTTTAGACCGCGCGGTCGA
CGCACGGTtacttcaacaacaacaacagaagCAACCTATGATTGCCGCAG
GTGATTTGGGAATCGAAACACTTTGTGAGCGACACGCTGTTCCAGTCAAT
TGTACAAACTCAACAGATG
Run BLAST on NCBI

transcript from alignment at scaffold_276:766212..771006+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056458 ID=TCONS_00056458|Name=TCONS_00056458|organism=Clytia hemisphaerica|type=transcript|length=4795bp|location=Sequence derived from alignment at scaffold_276:766212..771006+ (Clytia hemisphaerica)
TTGTTGCTCATTGTCATGCCAACCACAATAATGGGAAGAACAATACCACA
ACAAGCAACCAATCACAGTCATCCAAACGCTACCATCTTCCTCCATCAAC
CAATGAGAATGGATTACCATTTGTACGGCAACCGACTTCGATGAAGAAAG
ATGTGATTTATGAGCCATTAGAAAGGATGTCATTGGATGATGAAGATGAC
AACGAAGAGGAAGATGATGGTTTACATTTCTactttttctcatttctttC
TTTCCACACCCCAGTagcgagataaatcgagggggacggtataaagcaaa
gttgacatgtctccaaaatcaccgtccactttgctcgacgacggtaaaaa
cacgaAGATACCGTTGTCTGTTTgtgtgagcaaaggcgatatatagtcgt
acatcaactatcgattttgttttgtatccatttcacttaccgtcgccctc
gatatcctccgatacataaacttggTAGTGACCCGATCCGCCCCGGTGAA
TAACCTGGtgaaaaaatagccaaaaatgaaaattgagttaaaCTTTCTCA
CCCCAGTGAGTTTTGGGATCTCAAATTCAAACCCGgtgaaatttttaact
tttttcgtaGCTAACCCAGTGGATTTCCCAGTAGGGATGCATTTCCCTTG
CTTGTTATATTAATTGATTTAAATGAATATTAGACCCTTGCTGGAAATGG
GACTGCCATAGGAGAAAAAGGCGTTGGAAATAGTAATCTGAGGAACTCTA
ATTGATCCTACCCCATGTCACTTATTTTACAATCGTCATAATAATgtttt
tacagatttccaggccaccgtgcTTTCGTCGGGAGCTGGATTCCAAAATG
GCGCCCTCTTTGTAAAAGAGGACGTCAGGTTTTGGATTGCCACCAACTTC
GACCTAAAAGAATAGTTTAATACAATAGTTTAATTTAATACAGAAACTGA
CAAACTGATCAAACGTCATGCCAAAGTAGAACCGTTAAAATCCAAAGACA
CGagcaaaatatttgataaatatatacagtagagtctctataactcaaat
gtctccttataGATCGAAGAGTTTGTGTAATTATGTATTGATAAAAACCG
TAAAATCACAGCACGCGTATTATCATTCGATAAAGTTCTGTAATCAAACT
TTCAATCTTTAAAACTTTTCACTTTTAGATTTActatttactattttttt
gaACAGGAgatgataatgatgatgatgatgaagaggATTCAAAGAGAGAC
ATTCTGTTAATTCCTGGTAGCGATGCTGCCACCGCTCCTATGCAGCAAGT
CATGCAAGTTATCGGTAAGTAACTCACATGCCTGACTGGGTACTAGGTCT
GaaaggtgacgggtatgtccgagccaaagtttgaaaatcgaccctgTCAG
AGACTATTTCCCAaatttttagccaaattttgaaagattaaaaattgatc
gtttttcttctttcaaaggTAACAGTTTGGCAAACAGTGAGGCTCAGACA
CCATCCATCGCATCTAACATGGTTCCGATCAACCTCTCTGGATCAAGAAG
AAACACCAAACCTGTCATCGTCAAATACGTACGAGCGCCTCCTACCACGC
AGTATTACACAACTGTGGACGAAAGGAGTGAGGGCGGCGAGGCTGAAGTG
GGCGGCGAAAGGACTACGACCGCAAGCGCCGCCGCTGCTTCTCAAGTTAT
GGAAAATCCAGGTATAGTGTTTTAGGATATTAACGAAACTGCCCGAACGG
GAATTTTGAAACCGATCAGAAAGTCACATCGCGCGCACTAAAATTCGAGC
TAAAATTCAGCTAAAACAAAACTTATCGGAGAGATCTCTTAAATTCGGAA
GTAACCCTCCCGAGAAGGGTAGTGTGGTGAAGACCGACTATAACCTAAAC
CATAAGCTTACTGAATAATTTCTTTATCACCCTTTCCACAGGTTGtctct
ttctaattcgatcttcaagggaccaaacattttattcgaattagtgaaag
attcgaattacagagagtaattcgAACCACTTctcagctgaggggaccaa
tatttttaattcgatgaaaaattcgaattagagagcccagctggcacaaa
acgttgtttaaacgttaatataacgttatatggacgtagtgaacgttaga
tagacgttgaaacaacgttgtgtgcctacTGGGAGTTGACTGTATTCTTT
TATGTTCCCATCACTGACAGTAGGTTTTGGTCGTGAGAAGATTCACCAGA
CAATGTACAACGATGTAGATGTTGACCAATTAAAAGCTGCCCAACAAATG
CAAGACAGTGAAGAATCGATGATCAGTAAGTCAGCAGTTTCCTTCAGTCG
CTTTtccctttaaaagttttgtttattaataagagtgatatatatatata
tatatgctTATTCATCAAGATTAATTTGcaagctttttggacctacctcc
gggtaccccggtggaggtcctataaattaacccatgtccgttcgttcgtt
cgtccgtctgttaccatcttttctcaatgttgactcattatttttttctg
attttttgcacaatgatgcaaaatggcaatgcctaaaatgtgacggagcc
cgatttttgagaaaaaatttatttgggcaaatttgggccaaaaactacct
aaaaattggtttttttggattttgtgcaaaatcctgtcattacttttttc
tgattttttgcacaaagatggagggcaagattctctaaagaatggctgaa
gtggtttttcccggaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatt
gatttttgaagccggaactattcaaaaatcgccggaacaacctattttcg
ccggaaagacagtatttcttgaatttcccGAGTActgtactttatatatt
tttttaattttgcgcACTGATGAAAGATgaaccagaactttctatttcta
tttcccctactccccttccctcttcccccatcaacaGTCAATGATAACAT
Ttaatgtgttatgcattttcgcaaaacgctacaattaaggtcataatata
ttgagaattttggttattttaacctttttcaagatttaaagttctggcga
gaaagtcgatttttggctatctttttaatttaatcgaatatttcaatttg
ggaggggttggcagacttccaggctatattctaagtcttattggactatt
tttgaacttttggatcctcacatcctaagtcttaagtctcatgttaaaac
tcagagttaaaactctacacttccaacctactttagagcacttacaaatc
gattgtggttcaaaaacttcccggtggatttcccttttttctcaaatatt
atgaccttgattgtatatcatctgactgattgttttcatttttctcctta
ttgccttattatctagctttcatcatcaggtaggtccattcagcatgttg
cttgtttatattggattgacacggatgtggagcaagattgttcagaaagg
gaaaaagaaaaacattttttgcctatatcagcacaatataacaataggaa
gacactgttctgatatgagacatgtctgatatgaaacgggaacacttctG
TAAATATAAAACCTGTGATCAGGgattctacaatcatggtcaaaatctat
tgagatAATATCGCttatttcctctttttttcgaaatttggagttcgggt
gagaaagtcgcttttgggctaattgataaatttattgagtatttcaattc
gggaggggtttataggcttccaggctatattctgagaccattcttgaact
tttggatccttagaagtcttaagtctagcgttaaaactctacccttccaa
cctaatttagaacgcttccaaatcgtttgtggttataagatttcgtagga
atttcccttttttctcaaatattacgaccatgattgtagctcaAAAGACA
TTTTGACTGACGAGTTACAgttctgaaaattcaaatggCGAATCCTTTTT
CAGAAAGCATTGTGCTTTTAACTTATCTAACCACCAAACCTTTATCCGTG
GGTGTTTGAAGTGATCTTGGCTAGGTTAACTCGTACTCATTAGTTTTACG
CAGCTTTTAGCGTAAGGTTTATCGtcgaatgttcttatttttttgcagCT
AAATTGATTGGTACACCACCCAACGGAGTAACAAGATCATCTTCACAACA
ACAACCGCCCTCCAATAAATGGGCGTCCTCACAATATCTTCAACAACCGG
AATCTCCAACTGACGGCGCTTATACTGCTAGttattcagataatattgat
agTGCGCTTTTAGACCGCGCGGTCGACGCACGGTtacttcaacaacaaca
acagaagCAACCTATGATTGCCGCAGGTGATTTGGGAATCGAAACACTTT
GTGAGCGACACGCTGTTCCAGTCAATTGTACAAACTCAACAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035574XLOC_035574Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056458-exon-scaffold_276-1491911889:766212..766430TCONS_00056458-exon-scaffold_276-1491911889:766212..766430Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1510915933:766212..766430TCONS_00056458-exon-scaffold_276-1510915933:766212..766430Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1575043694:766212..766430TCONS_00056458-exon-scaffold_276-1575043694:766212..766430Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1491911889:767418..767525TCONS_00056458-exon-scaffold_276-1491911889:767418..767525Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1510915933:767418..767525TCONS_00056458-exon-scaffold_276-1510915933:767418..767525Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1575043694:767418..767525TCONS_00056458-exon-scaffold_276-1575043694:767418..767525Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1491911889:767680..767922TCONS_00056458-exon-scaffold_276-1491911889:767680..767922Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1510915933:767680..767922TCONS_00056458-exon-scaffold_276-1510915933:767680..767922Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1575043694:767680..767922TCONS_00056458-exon-scaffold_276-1575043694:767680..767922Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1491911889:768435..768536TCONS_00056458-exon-scaffold_276-1491911889:768435..768536Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1510915933:768435..768536TCONS_00056458-exon-scaffold_276-1510915933:768435..768536Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1575043694:768435..768536TCONS_00056458-exon-scaffold_276-1575043694:768435..768536Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1491911889:770710..771006TCONS_00056458-exon-scaffold_276-1491911889:770710..771006Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1510915933:770710..771006TCONS_00056458-exon-scaffold_276-1510915933:770710..771006Clytia hemisphaericaexon
TCONS_00056458-exon-scaffold_276-1575043694:770710..771006TCONS_00056458-exon-scaffold_276-1575043694:770710..771006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:766212..771006 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0130211	0	0.137243	0	0.0243255	0.0497457	0.142204	0	0.0276183	0.0135914	0	0.104754	0.016413	0	0	0.0674013	2.26709e-07	0.0567373	0.0987756	0	0.132336	5.30968e-07	0	0	0	0	0.012367	0	0	0.0101991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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