|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056460 ID=TCONS_00056460|Name=TCONS_00056460|organism=Clytia hemisphaerica|type=transcript|length=11035bp protein sequence of TCONS_00056460-protein >TCONS_00056460-protein ID=TCONS_00056460-protein|Name=TCONS_00056460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3677bp LDNASRRGGDNIDAQVTELSKVNKRFTDKYLLKGKNFLHDGKIFHYGEPKRun BLAST on NCBI transcript from alignment at scaffold_276:785903..815681+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056460 ID=TCONS_00056460|Name=TCONS_00056460|organism=Clytia hemisphaerica|type=transcript|length=29779bp|location=Sequence derived from alignment at scaffold_276:785903..815681+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_276:785903..815681+ >TCONS_00056460 ID=TCONS_00056460|Name=TCONS_00056460|organism=Clytia hemisphaerica|type=CDS|length=99279bp|location=Sequence derived from alignment at scaffold_276:785903..815681+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056460 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 2.389e-21 Identity = 59/148 (39.86%), Postives = 80/148 (54.05%), Query Frame = 3
Query: 10188 LTIHNELRKVHKVPPLTIDPMLTAMAFQHAQQISSMGYLKHPSSKEMLGTGENLLLGCYDGEYEISAEEAVLRWYAEVCNPGYSFNDKKLSSGTSHFSQVVWKSTAKLGMAKAVRMQNGLRCTYVVARYAPGG---NEGAKFEDNVQP 10622
L HNE R+ H VPPL + L A Q+++ ++S LKH GENL YD + +E RWY+E+ N Y+F +SGT HF+ +VWK+T K+G+ KA ++VVARY P G NEG FE+NV P
Sbjct: 14 LKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYD----QTGKEVADRWYSEIKN--YNFQQPGFTSGTGHFTAMVWKNTKKMGVGKASASDG---SSFVVARYFPAGNVVNEGF-FEENVLP 151 The following BLAST results are available for this feature:
BLAST of TCONS_00056460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.