TCONS_00056625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056625
Unique NameTCONS_00056625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056625 ID=TCONS_00056625|Name=TCONS_00056625|organism=Clytia hemisphaerica|type=transcript|length=453bp
CAGCTCTCAACTTCCGGATACCTCTCTATTGGGCGTTCGAAACTCAATCT
CCATAGCAACAAAAACATGCTACACGGTTCACGAATCATTGCATCTTACA
AACCATACATCTCAAAAAACTTTGGAGCAATATTCTACCGTGAGACGTTC
AATGCGACGGACTTACAACAGATTACGAATCAAATTTCCAAAtcaaaaat
acgaaattttgaatGCAATCACGCATTGATCATAACATTTGATCACGTCA
AACAAAAGTATAATCAATTTACGGATAAGGTTTTCCAATGGATATTAGCA
AGTAACGGAACAAATTTGGTCTCGATGATTCATTACCATCACTTTGATGA
ACCAAACGATGTCATTGCCGGCTATTTTGACGAAAGGTGCTGTAGAGCTT
TGCGTGAAAATAAATGTCAGATGAAACCATTCGGTGAAGAGGCAATGGGA
ACA
Run BLAST on NCBI

protein sequence of TCONS_00056625-protein

>TCONS_00056625-protein ID=TCONS_00056625-protein|Name=TCONS_00056625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
QLSTSGYLSIGRSKLNLHSNKNMLHGSRIIASYKPYISKNFGAIFYRETF
NATDLQQITNQISKSKIRNFECNHALIITFDHVKQKYNQFTDKVFQWILA
SNGTNLVSMIHYHHFDEPNDVIAGYFDERCCRALRENKCQMKPFGEEAMG
T
Run BLAST on NCBI

transcript from alignment at scaffold_277:7196..7648

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056625 ID=TCONS_00056625|Name=TCONS_00056625|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at scaffold_277:7196..7648 (Clytia hemisphaerica)
TGTTCCCATTGCCTCTTCACCGAATGGTTTCATCTGACATTTATTTTCAC
GCAAAGCTCTACAGCACCTTTCGTCAAAATAGCCGGCAATGACATCGTTT
GGTTCATCAAAGTGATGGTAATGAATCATCGAGACCAAATTTGTTCCGTT
ACTTGCTAATATCCATTGGAAAACCTTATCCGTAAATTGATTATACTTTT
GTTTGACGTGATCAAATGTTATGATCAATGCGTGATTGCattcaaaattt
cgtatttttgaTTTGGAAATTTGATTCGTAATCTGTTGTAAGTCCGTCGC
ATTGAACGTCTCACGGTAGAATATTGCTCCAAAGTTTTTTGAGATGTATG
GTTTGTAAGATGCAATGATTCGTGAACCGTGTAGCATGTTTTTGTTGCTA
TGGAGATTGAGTTTCGAACGCCCAATAGAGAGGTATCCGGAAGTTGAGAG
CTG

Coding sequence (CDS) from alignment at scaffold_277:7196..7648

>TCONS_00056625 ID=TCONS_00056625|Name=TCONS_00056625|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_277:7196..7648 (Clytia hemisphaerica)
TGTTCCCATTGCCTCTTCACCGAATGGTTTCATCTGACATTTATTTTCAC
GCAAAGCTCTACAGCACCTTTCGTCAAAATAGCCGGCAATGACATCGTTT
GGTTCATCAAAGTGATGGTAATGAATCATCGAGACCAAATTTGTTCCGTT
ACTTGCTAATATCCATTGGAAAACCTTATCCGTAAATTGATTATACTTTT
GTTTGACGTGATCAAATGTTATGATCAATGCGTGATTGCattcaaaattt
cgtatttttgaTTTGGAAATTTGATTCGTAATCTGTTGTAAGTCCGTCGC
ATTGAACGTCTCACGGTAGAATATTGCTCCAAAGTTTTTTGAGATGTATG
GTTTGTAAGATGCAATGATTCGTGAACCGTGTAGCATGTTTTTGTTGCTA
TGGAGATTGAGTTTCGAACGCCCAATAGAGAGGTATCCGGAAGTTGAGAG
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035659XLOC_035659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056625-exon-scaffold_277-1491911889:7196..7648TCONS_00056625-exon-scaffold_277-1491911889:7196..7648Clytia hemisphaericaexon
TCONS_00056625-exon-scaffold_277-1510915933:7196..7648TCONS_00056625-exon-scaffold_277-1510915933:7196..7648Clytia hemisphaericaexon
TCONS_00056625-exon-scaffold_277-1575043694:7196..7648TCONS_00056625-exon-scaffold_277-1575043694:7196..7648Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056625-proteinTCONS_00056625-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:7196..7648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.161065	0	0	0	0	0	0	0	0	0.67691	0.301276	0	0	0	0.111877	2.1639	1.6174	0.140582	0.822849	0.166713	0.303133	1.09277	1.1146	0.199373	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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