TCONS_00056599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056599
Unique NameTCONS_00056599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056599 ID=TCONS_00056599|Name=TCONS_00056599|organism=Clytia hemisphaerica|type=transcript|length=778bp
TTAAAGCTGAAAAGACAAGTGGATATTTCGGAATGATACGTTTTATTCTT
GCGTTGTTCTCGATTTTAGTTGGCATACAGAAAGtttcagCGAGTAGCAA
TTTTTACAAAGTTCCTCCAAACGCCACTACTTTCACATTATCAAACGAAT
GGAATAAAATCCGTCTTGATTTCCCTATCCtcgggaaaaaagaaattcat
GTATCAAAGAAagctattgtttcattttctggTCAATTGGATTACTCCGG
TATCCTCATTCCGTCACCACAAAACTATCGTTTCATTGCTCCATACTTTC
ATCCTGGATACCAGTCACATGGTTCCTTGACAACCACACAAACAAATGAT
TCAAGATTCTTGGATCTGGTTGCAAGGAACGTACACAATTTTAAACCAAC
GCTTAGTTTAGTTTTGGATTTTGTGAATGTCACTGATCAGCAGGGGAAAG
TCAATACCTTCCAAATGGTTCTACTTGGTAATCGCCACGAAACATATCTG
ATCCTCAATTACCAAGAACTTCGAACCAGTAATGCTGTGGTTGGtttttc
tttacaaaacgaATGCAAGTACGATATTTTCGCCACACCATCAAACAGCA
AACGATTGATGTATACAAACAGTACAAATACTAAAGGACGTCATGTTTTT
CATTTGACACCAAGATCTTGTATCAATAAGCCAAATGATTACAAGCCAAG
TGAGAAAGCACAAACATCGCCCTTTCAGCCTCCATACCCAATAACGGTTG
GAAATCAAGCTCCCTTTTTAGGGACACG
Run BLAST on NCBI

transcript from alignment at scaffold_277:12164..15241-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056599 ID=TCONS_00056599|Name=TCONS_00056599|organism=Clytia hemisphaerica|type=transcript|length=3078bp|location=Sequence derived from alignment at scaffold_277:12164..15241- (Clytia hemisphaerica)
TTAAAGCTGAAAAGACAAGTGGATATTTCGGAATGATACGTTTTATTCTT
GCGTTGTTCTCGATTTTAGTTGGCATACAGAAAGGTATAAATTTTATGTT
TACCACCAAGGAAACACCCAAAAGCTTCTCAAAGAAGTAAAATAAATGTG
TGTTCCCCTTAAGATTGCTACTGGTTCTATATTCATACAGTCCTTAGGTA
TTATCGACAAAAGTTCCACAGGAGACCGTACTTAGACAATGATGGGAGTT
TGGTATGTGTATGATAACACTTTAGGTGCCTCTACAAAACCAAACAAAAT
TAGTCCCTTACAGAATTTTACATTATTTACACCCCTGTCTCACAGCCCCG
GTGGAACTTTTTTCTCAGTGGGGATAAAAAATCCTATTGAAATCCGGATG
GGGGTAGAAATTCTTTTGTTCCAAGGCTTAAAAATCCAGTGGGGATGGTT
TTGGAGTGCAATTTTTAAACATGGAATTTCGAATGGGGACAAAATCAAAG
TCAATATCCCAGTGGGGCTGAAATCACATGGCTTTTTCCCACCGGGGACG
AAATTTTTGCCAAACTTTCCAACTGCAACTGCGTTTTAATTCTTTATTTT
TCAGTTTCAGCGAGTAGCAATTTTTACAAAGTTCCTCCAAACGCCACTAC
TTTCACATTATCAAACGAATGGAATAAAATCCGTCTTGATTTCCCTATCC
TCGGGAAAAAAGAAATTCATGTAAGTTTAAAGTGTTAATTTTTGACTTGA
TATTAATTTTCGTTCTGATAATTTGAATATACTGATAATGGGGAAACTAG
CAAACCAAGAGAACTCGAGAGACTTTCATTTTAACTTTTTTGATAAAGTA
AATAGTAAAGTAAAGGGCAGATTTATTTTTGAGGCGTCCATCACTGTTAT
CTTTACAATACTGCATATCTGTTCTCCTTCTTCTGAACGATCCAATAGGT
ATCAAAGAAAGCTATTGTTTCATTTTCTGGTCAATTGGATTACTCCGGTA
TCCTCATTCCGTCACCACAAAACTATCGTTTCATTGCTCCATACTTTCAT
CCTGGATACCAGTCACATGGTTCCTTGACAACCACACAAACAAATGATTC
AAGATTCTTGGATCTGGTTGCAAGGAACGTACACAATTTTAAACCAACGC
TTAGTTTAGTTTTGGATTTTGTGAATGTCACTGATCAGCAGGGGAAAGTC
AATACCTTCCAAATGGTGAGTTTCTCTATTTTCAAGTATATTGGGCTGTT
CCATTAAAAAACCATACAGGGGGTGGATGAACCTTTTCAAGTTAAAAAAG
AATTTTTGGAAAATGACAAGATTTTCAAAAATATTCTTCTTCGTACCTTA
AAGTGAAGGTGGACGAAGTAAAATCAGTCTTTTACCCCCTGGAAATTTTT
CTCGGATTACCCTCTGGGAATGTTCGTGCACCCCCCTGTATGGATATAAA
ATGGAATGACCCATTTCTCAAAACAATTTCTTCTTACGCTATACTTTAAA
AAGCTAATATACCGTTGGAAAGATATTTTCAAGAAGAATAATGAAGATTT
TTTGAAAAATTGACAAAGAGGAAGAAGAAAACCTTTTAAATCGCTTTCTG
TACCTCAATTATTTTCAAACATTAAGGGAAAATTACTCCAAATAGATGTA
TCTTCAATATCTTACATTTCTTTAAATTTCAATGAACGAAATAAAAAAAG
TGTTGATTCGATGTGCAGTCAAATCTCTCTAATTCGAATTTCTATTATTC
TAATCTCTCTGTAATTTGAACTAAACTATTGGTCCCCTCAGCTAGAAAGT
GGCTTAAATTTCTCTCTGTAATTCGAATCTTTTTCTAATTCGAGTAACAT
TTGCAGTCGCTTGAAGACCGAATTAGAGAGTGTCAATTACCTTTAAGAGA
AGAAATTTTGGCGAACGAGCCAATTTTGGTGCAGTTTAGCGGAATTTATT
TTGGCGATTCAATAAAATTTCTAAATTTAGCGAGAATTAATTTTGGTGAA
CAACCCATTTGTTCAATATTTTAGCTGAAAAAAGGGTTTTTAGGAGAAAT
AGAGACTAAATTAATTAATTTTGGCGAGAATTCATTTCGGTGAATAACCT
ATAAATTTAAATTTGGCGGAAAGAATTTTTTGTCAAATTTAGCGAAATTT
TTCGGCAATACTTTTCTTCATCCTTCACCACGTTCTAGGTTCTACTTGGT
AATCGCCACGAAACATATCTGATCCTCAATTACCAAGAACTTCGAACCAG
TAATGCTGTGGTTGGTTTTTCTTTACAAAACGAATGCAAGTACGATATTT
TCGCCACACCATCAAACAGCAAACGATTGATGTATACAAACAGTACAAAT
ACTAAAGGACGTCATGTTTTTCATTTGACACCAAGATCTTGTATCAATAA
GCCAAATGGTAAATTCTCTTATACATTTTTGTGGGTTATGCCTGTCCCGG
TGGATTGAATTTGAAAGTGGAGAGGCTGAAAATTAGTCTTGAAGAAGGCG
CCACCGGTTGACGCCGACGGGCTAGAAAATTTAAAAAAATAGACCCTATA
TATTGGCTAAAACCGAATTTATAACAGTACTGCATAATGATACAAAACAA
AAAAACTTTGAATCAAAAATCATATTTTTGCAAAAAAAAGTGGTGAGGCT
GAAGTCTCCCCATCTTCCCCGCCTCCGGCCTGTATGCCTATTCAGAGACT
TGTTATTTTCGTCTTTGCGACTTTTTATTCATCCTTACATTCTCGCTGCG
GTGGATGGGATCCGGAGGGGGAGGTACTTATAGGCAAAGTGGGTATTGGA
GTATGTGCGAGCCATTAGGGACCCTTCTTTACACCCTTAAAAGTCTTTTT
TAAGGGTGCCAAAACCATAAAATTAGCAATTGAGTCGCTGAAAGGGTCCC
GCAAAATTACGAAATATTGAAATTGATTCCCTCATAGGGTTAAAAAGTCT
CGTAATTTATTGAAAACAGTAATTTGATTATTTATAGATTACAAGCCAAG
TGAGAAAGCACAAACATCGCCCTTTCAGCCTCCATACCCAATAACGGTTG
GAAATCAAGCTCCCTTTTTAGGGACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035649XLOC_035649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056599-exon-scaffold_277-1575043694:15158..15241TCONS_00056599-exon-scaffold_277-1575043694:15158..15241Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1575043694:14522..14637TCONS_00056599-exon-scaffold_277-1575043694:14522..14637Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1575043694:14027..14293TCONS_00056599-exon-scaffold_277-1575043694:14027..14293Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1575043694:12834..13053TCONS_00056599-exon-scaffold_277-1575043694:12834..13053Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1575043694:12164..12254TCONS_00056599-exon-scaffold_277-1575043694:12164..12254Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1510915933:15158..15241TCONS_00056599-exon-scaffold_277-1510915933:15158..15241Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1510915933:14522..14637TCONS_00056599-exon-scaffold_277-1510915933:14522..14637Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1510915933:14027..14293TCONS_00056599-exon-scaffold_277-1510915933:14027..14293Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1510915933:12834..13053TCONS_00056599-exon-scaffold_277-1510915933:12834..13053Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1510915933:12164..12254TCONS_00056599-exon-scaffold_277-1510915933:12164..12254Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1491911889:15158..15241TCONS_00056599-exon-scaffold_277-1491911889:15158..15241Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1491911889:14522..14637TCONS_00056599-exon-scaffold_277-1491911889:14522..14637Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1491911889:14027..14293TCONS_00056599-exon-scaffold_277-1491911889:14027..14293Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1491911889:12834..13053TCONS_00056599-exon-scaffold_277-1491911889:12834..13053Clytia hemisphaericaexon
TCONS_00056599-exon-scaffold_277-1491911889:12164..12254TCONS_00056599-exon-scaffold_277-1491911889:12164..12254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:12164..15241 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.070597	0.0345341	0.0420419	0.0664442	0	0	0	0	0.031585	0	0.165871	0.064597	0	0.0189975	0.21063	0.0479753	1.42503	1.66459	0.150711	0.308749	0.0714905	0.292478	0.669436	0.448091	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top