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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056603 ID=TCONS_00056603|Name=TCONS_00056603|organism=Clytia hemisphaerica|type=transcript|length=4191bpRun BLAST on NCBI protein sequence of TCONS_00056603-protein >TCONS_00056603-protein ID=TCONS_00056603-protein|Name=TCONS_00056603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp MGGMGSRASIDSVDIKPPPGIQPPPPHAHAHPSQQTPASTSQSSPQHVQQRun BLAST on NCBI transcript from alignment at scaffold_277:66357..102084- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056603 ID=TCONS_00056603|Name=TCONS_00056603|organism=Clytia hemisphaerica|type=transcript|length=35728bp|location=Sequence derived from alignment at scaffold_277:66357..102084- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_277:66357..102084- >TCONS_00056603 ID=TCONS_00056603|Name=TCONS_00056603|organism=Clytia hemisphaerica|type=CDS|length=7506bp|location=Sequence derived from alignment at scaffold_277:66357..102084- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056603 vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 6.697e-84 Identity = 167/240 (69.58%), Postives = 194/240 (80.83%), Query Frame = 1
Query: 1822 NQP-PDYWTSIAYYELDQHVGEVFKVPKRFNSVIVDGYVDASGKGGNRFCLGQLSNVHRTEPTEKALLYIGRGIQLDRRGEGDIWVRCLSEQSVFVQSYYLDRQAGRSPGDAVHKIYPQAYIKVFDLRMCYDQMKXXXXXXXXXXXXXXXX---------XXXXXXPAYSMSHSSASIGVDDXXXXXXXXXSFIKGWGPDYPRQSIKQTPCWIEVHLHRALQLLDEVLHQIPINEPMPSD 2511
N P P+YW SIAY+E+D VGE FKVP V VDGYVD SG G+RFCLGQLSNVHRTE E+A L+IG+G+QL+ +GEGD+WVRCLS+ +VFVQSYYLDR+AGR+PGDAVHKIYP AYIKVFDLR C+ QM+QQA AQAAAAAQ AA GG PA S+S ++A IGVDDLRRLC+LR+SF+KGWGPDYPRQSIK+TPCWIE+HLHRALQLLDEVLH +PI +P P D
Sbjct: 316 NHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSG--GDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISLS-AAAGIGVDDLRRLCILRMSFVKGWGPDYPRQSIKETPCWIEIHLHRALQLLDEVLHTMPIADPQPLD 552 HSP 2 Score: 240.35 bits (612), Expect = 1.778e-67 Identity = 132/175 (75.43%), Postives = 148/175 (84.57%), Query Frame = 3
Query: 270 NNMAV-QAPSSNDACLSIVHSLMCHRQGGESETFAKRAIESLVXXXXXXXXXXXALITSITTGGAHPTKCVTIQRTLDGRLQVAGRKGFPHVIYARIWRWPDLHKNELKQAAFCQFAFDLKCESVCINPFHYERVVSP--DLSSLSLNAHPSDQSNSMSPTM-EDYKSRDIGGGP 782
+NM++ P+SNDACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELD+LIT+ITT GAHP+KCVTIQRTLDGRLQVAGRKGFPHVIYAR+WRWPDLHKNELK +CQ+AFDLKC+SVC+NP+HYERVVSP DLS L+L QSN+ S M +D D G P
Sbjct: 2 DNMSITNTPTSNDACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGIDLSGLTL------QSNAPSSMMVKDEYVHDFEGQP 170 The following BLAST results are available for this feature:
BLAST of TCONS_00056603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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