TCONS_00056576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056576
Unique NameTCONS_00056576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056576 ID=TCONS_00056576|Name=TCONS_00056576|organism=Clytia hemisphaerica|type=transcript|length=1805bp
cacggtagcaaacataaTCTGTCAACAAATATGGGTATCAAAGAGACATT
ATCCGATATCAATGCTGACCATCCTTTACACAAAGCCAAAGCTTTTTACT
TCTTATTCGATGCAGCAATCAAAACACTACCTCGACACCTGGGAATGTAT
TACAAACACACCTTACTACTCTCACCTCACCAAGTTGCCATGTTGTTATC
TGTTAGACCTTTCCTATTAATATTTGGTTCACCTGTCCTTGGTGGTATAG
CTGATAAAACCAATAAATTTCGACATGTGATGTTGATCTCGTTATTGACA
TTCCTGGTTACTTACGTTCTAGTCCCATTGGTTGAACCGGTGGAAGGTTT
TAATTGCAAAGAACACGTACACTTCAATCATTCGGCCAATCACATCAATA
TTTCAACGCCAGTTTTTCATAAACTTCATAAACAAATTGTGAGCAATGGT
GCCAGAGTAAAGGTGGAAGTTCACAAGTACTACCAAATGGTCAACGAAGA
AGGCACCAATAATCACCAATATGACGGGAACTTGATGCAGGACTTGTACT
ACACGTGGCCGTTCGACATGTATGAGTACGAACTTACGGATGATATAACA
CAGAAAGTATTCAACGTCATTCTCTTAATCACAATTTTTGGAGAATTCTT
CGCATCACCGTCAGAAACGTTTGCCGATCTATATACGCTACGTGCTTTAG
GCTCTAACCATAACCGCTATGGTTGGCAAATAATATCTGGTTTATTTGGT
TTCTTCATTGTTTCAATCGCTTTTGCAGCGTCATCAGACATACGCTTACA
GTTGAAAGATGATTTCTGTCATGTTGGTCACGTGATCAATTACAGCCCTT
ATTTATTCGTAGTATACGGCCTTGTTGGCGCATGTATCCTGATTGCCGCT
ACATTCCAATACCGCCTTTTTCCGAAACCTACCGCCCCACGTAAAGATGA
CGGGTGTAATTGCGATTGTAATTTCATCAAGGCGTTACCAGTACTAGCAG
AAACCCCCGCTTACACTGCATACGCTATTGCTGTTATATTTTGTGGATTT
GCCTGTGGTGTAAAACAGCTTTATATCTACCATTATCTTACAGAGCTGGG
TGGTCCTCATCAGCTCATATTTGTAGTTTTGAGTGTCCACTTTATATCAG
GTTTCTTGGCACTCTTAGCGTCACCCTACCTACTTGAGCGTTTTGGAGCA
TCAAATCTTATAGCAGGTGGTTTGCTTTTGAATGGAATCTCATTTGTTGT
ATATTCACTCATCAAAAATCCATGGTTGATCTTAATTGTTGAACCTTTCC
ATGGGCTCTGTCAAGAATTATCTTGGGTCGCTATTGTCACTTACGCTGGT
GCGCCGCCACAAATTGGGGCGGCTCTACAGGGTACGGTACATGGTTTACA
TAAAGGTCTTGGACTAGCTTTAGGCTATTATGCAGTATGTGTTTTAATCT
TGAAATTTGGTTACGTCGGTTTCTTTTTAGCTACtggtttgttatttttt
gttgtgtttggattttatttatttgtcaTTCGAATGTATCCGAAAGAGGA
AAGCATCGCGGACAGTTATAGTTGTTATTCCAAGATTCATCAACAGGACG
TGGACAGTGACGGCGAAGAGACGGTTGAAATGTTTCAGAAAGGTGATTAT
AATAACGAAACATTGGATAGATCTTTCTTAGAAtgattttggtttgattt
agcGAGGTTGAGCATGAGGATATACAATATGCTTTTTTATACAACCTAAT
AGGTCTCAGTACTAAtttgataaatataattttcttgTAATTCGACATTA
GCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_277:266111..276640+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056576 ID=TCONS_00056576|Name=TCONS_00056576|organism=Clytia hemisphaerica|type=transcript|length=10530bp|location=Sequence derived from alignment at scaffold_277:266111..276640+ (Clytia hemisphaerica)
cacggtagcaaacatagtaagtataagaacattgtgcttttaattggttg
aaatctttttttgcatcggaaaaactttttcaaactttttagcAATAATT
GACCAAACTGACCAAATTCAtaatcaatagaaatttttctcttttatttt
gattttgtgcCCTAGTCTTTACTTGTAATTATTATATGACAATTGCCGTA
TCTAATAATTGCAATGCTTTCGATATAAAATTTATCCATACGCTTTTGTA
GTGATGTTTGTAAAGCCCTTGCCACAACTGCCACGCTGGCTGcaagaaat
ttggaaaaagcgatattatacctgttatcttttttctttaaagaatcaac
aagccatcaacatcaataaattacatatatttcctcagaaactttcaaaa
ttatctcccattatgactttcttgtaGCCGTTcagaaattaaccaatcgg
gttgtGTATCAGAATTCCAATGGGAGTTCTtatccgagatttgtaaaata
gctaagtcagcaaaaaaactttttccgagggtttgaggaaaaaacagaac
tgctatcatttgctttttatttaaccatGTATTTAAATTTGcactcaaaa
atacttaaataaataagttaataaaaTACGGGGGATtcggaccattctat
cgtgtgCGCAAAATAGgacggaaactaagtagcaccctcagtgcaagatt
gccgcctcatctttattcgcccgcgcgagaacGCGAGTTAATCATTTTTC
TCCTgcactcaaggggaaaaggaaagtgatcgatattctttgaaggaaaa
acgtcagaaacaaacctaAAGTTCAAAAGATTTCTGCTATGCATTTTTTt
tggaacgctgaaaaactctaatttcgatcttccgtaaggtaaagaggttg
cgagatttgggttagcgaggcaaaaatcgctaaaaagctggtaaaatcgt
aatcctcaaaaatcgaagttccagcNcgatgaatcgacgatcgaacgcaa
tcgaacgcaatcgaacatcaatcgaacgcaatcgaatatcaatcgaatct
gacaATTGCAGTAATATTctattgagattcgattgcgtttgacaatcgaa
ttccaatcggtcgattgcgtcgatttggttcgactggtacgatcgtcaat
tccgttcgattgaaaTCGTCTGGATATAGTAGGAGGAAATTTGCCAGTCT
GGAAAGGAGGGAAATGTTACGCGGGAGTTGCGCCAGCTTAACTGGGAATA
ATTGAAGGCAGCAGATCTCAAACCTCAAATCTACGCCGGAGATATCCGGC
ACATGAGCCGCAATTTCCAGActgggaaatttgttcgttttttgaggtcg
cttgatttttttagtcaaagcacttgttatacatttttggaaagctaagg
ggttaatcgaaattacgatgtttccaaatttttttcggacactttggtgt
gattttcggacaataattacggtctcaggcaaaaatcatagggtcaaaaa
ttaatgaagattttagcttgagaaaacggagacctgttggaaagctctca
aaaaattaagattagagatatattgcgagtataggtgatgtCAGTACATA
ACTCAAGATATTGGAGCTTCAAatagcgcaaaaactggacaaaacagctg
tttctggctgaaaaaacactgtttttaagggttaatatATCGAGTTAGGT
ATAGAAATCAcctacttgcaatatatctctaatcttaattttttgagagc
tttccaaaaatataaaacaggtctccgttttctcaagctaaaattttcat
tatataATTTTgtccctatgatttttgcctgagaccgtcatatttgtccg
aaaatcacaccaaagtgtccgaaaaaaaattggaaacattgaaATTCGGA
CTCCTCTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgtaaggtaaagaggtt
gcgagatttgggttagcgaggcaaaaatcgctaaaaagctggtaaaatcg
taatcctcaaaaatcgaagttccagcttCACTGTTAGTGTCTCGCTGTGA
TCATTATATTATATGGATGCCACaactgccacgcttgccacaagAGAATC
AACCACACCATAGTGTCTTGCTGTGATCGTTACATTAATATGATTGCCAC
AGCACAGTTGCCAAATTCAAGGGTGAGCAATAGCTGTGAAATCTATTCAA
TGATTAACACAGCTGCCATGCTTGCCCCGAGGAATTTAGCTGTACCATAG
TGTCTCGCTGTGATCGTTATATTATATGAttgccacgcttgccacaagAA
AATGAACTATCATAGTGTCTCGGCTGTGGTCGTTATATTATATGAATGCC
ACAACTGCCACGATGGCTGCAAGAAAATCAACCATACCATAGTGTCTTGC
TGTGGTTGTTGTATTATATGAATGCCACaactgccacgcttgccacaagA
AAATCAACCATACCATAGTGTCTTGCTGTGATCGTTACAttatatgattg
ccacagctgccatgTGATAAAGAGCGGCAGTCTCAGAAACACTATATATC
GCGACTTAGCCCATTATAGCTCCCAACTTAtttaacatttcaaaaaaaaa
tttataagaacatccaaaatttctgaagcctttttttagttttaagccaa
aaaatgttcttaacatgttcttattttcaccattttttcagaatttttgt
ccattttcctaagaaattgggtattttaatgtccccaaagccttaaaatg
ttcttaacttgttcttatcctttggccatcgaagccttatgttcttatat
agtttgttcttataaaaaagaatgtGTATTAAGGCTGAAATGGTTGATTT
TTGGGGTTTTATTAGCAAAAGCATTTAGGGCTTGAATTAGAAAgctttga
aattatgaaatgttatttcattttttatacgtttaggttttgtttttaaa
taagggagatattgtttgcttactcatcaattttaattcacaagcttttt
cacattggattggcacggatgtggagcaagattggtcagaaagaggacaa
gaaaaacattttttgtttaaatcagcataatataacaataggcagacact
gtcccgaAATGCAATATGTATCTGACACGAAACAGGAactcttatgtaaa
aataaaaccttcaaagaaatataataatcttttaaagaaaaaaaattaca
cttcAAAGCCATACAGAGGGAAACGGCCCTAAACATATACTTAGTAATGA
AAAAGGAATATTGATATAAGAAATTCAGCAGGTGCATTCCATACCTACGa
tatatataattttcaatcgactaaaagtcttaaaatgttcttctttttct
tagtctccttatttttcttattcagAGCTCTTCATACAAACAAAGAAGGA
ATTGTccattgttttttcttttggtcaAGTTTTTACATGGTTTTGTGAAA
ATGtaatttgagaatattttaaggaTCAGGAAATAGTAACAAGCTTAGAA
ATAAAGTCAGGTTTCAGTTTCAGCTTTATTATCAGCAATTTTGTTTAAGA
AAGGGGTCcttttccttttatttcatgttttcaattgctttatgatatat
ttttagttatcttgttttaaaaaataatgttttacttATATTAAAAATTC
ggttttcttttttagtaaATTTTAAGCCATATAACTTTTTGAAGATTAAG
AATATAAATACATAGGATTGAGTAAGATAAGACctgttatttttcctttt
ttttttctcttcaaaaaaaCTTACGAATAAATCTTCATCAAGATGTTTGT
TCTTCGTTTTAAGtttatatatgtgaagaaataggAATTTCTCTTCAACT
NAACTAAAAAAAtcaagcgattttacaaatttcccccgaCTTatagtacc
gtgagattgggtaacttgcatcagtggaggctaacatgcatagccctcaa
atgaaccagacctgatcaatcgaacttgtcgaaccaatcaaacaatcgaa
ctaatcaaactcgatcgaacgattaaagttcgattaaaaaaattaatcga
acctagTTCGAACACTCActatttttgaagcaatagcagttcgattagtt
cggtcagtaaaaacttcgattagttcgatgatattaaatcctcatatctt
ccctcgcttgcaaaaactttatccTTGCACACGATTtgattgccatttcg
acagttcccggacttaataGCTTTTAACGTTTATTGTACATTGTACCTGG
ATATTTGTCTGtccggaataaagtccgtagcccctctgttgaGATTTCGC
GCGCGGCCGAGTGACGGAACACTACACACCAACAAACTGCCTCTGacgct
aaaaggatacaggaaaagtgtgtagtccgttatcggaagtaatttcccga
tttacattctgaatttggctttgaaaagaagttaatatacggtggcggag
cagaacaaacttgtcaaacaaaattggtttagcgaactgatcgaaccgaa
actcattgatcgaacttaatcaaacactcacaatcattaaaaaaatctta
gagttcgattaaaaattttttaatcgaactttaatcgttttatggagttc
gattagttcaattGTTTGATTAGTTcaattgttcgattggttcgacaagt
ttgattgatcgggtctggaattaaagacctggctggtcattaaaatacaa
agttacatcaaaacaaaaatggtagagtaaagatgcgagcggagctgcgt
aattgtattttaatgaccagccaggtcattcatttgNgattttttttgtt
aatttcctTTGAATGAGTTTTGACAGGTTAAAGGtgtgaatttgatgttt
tcacGTTGCCGTTGCAGTTGTGACTTCGGAAACTCTCTAATAAAACGTCA
GAGATGAAatcatctttttttttcaatcagtgattcagaCCTTCCTTTTA
ATCTTATcttaaaaagggtgtcggaattacaTGAGGGCTGTCAACAtcag
accaacttacggtacttaTTCTTTTGGGACGAGAATGATGGAggttttac
aagctcttatttgatttggttggtcgttaaccagtaataaaacaattttg
ttacttttttctaaagaacgcttcatttttattacttcaaatgaccaatt
attaattatcttataaaaacttaaCCTTTTCTGATTCTGTTTTTTAaaat
gccaaaatttcttttgaatattttttcagaTCTGTCAACAAATATGGGTA
TCAAAGAGACATTATCCGATATCAATGCTGACCATCCTTTACACAAAGCC
AAAGCTTTTTACTTCTTATTCGATGCAGCAATCAAAACACTACCTCGACA
CCTGGGAATGTATTACAAACACACCTTACTACTCTCACCTCACCAAGTTG
CCATGTTGTTATCTGTTAGACCTTTCCTATTAATATTTGGTTCACCTGTC
CTTGGTGGTATAGCTGATAAAACCAATAAATTTCGACATGTGATGTTGAT
CTCGTTATTGACATTCCTGGTTACTTACGTTCTAGTCCCATTGGTTGAAC
CGGTGGAAGGTTTTAATTGCAAAGAACACGTACACTTCAATCATTCGGCC
AATCACATCAATATTTCAACGCCAGTTTTTCATAAACTTCATAAACAAAT
TGTGAGCAATGGTAAGATTAtgctttttgattgtttttgtcATACATTTT
CAACATTCTTTTCGCATTTCTGGCTGGGCACCTGTTTTTCATCCTCTTTC
CGaaataatttttaatcttttatataatattttaaaaaacaGCCTAGTAA
TAAAATCGTTATATTGAATCtacatttatcaaaaaaaatctaaaacaaca
attttttgaatttctctggagttaatttttttaaacttttagttCAAAGG
CAGtatgatttttttcgaaaagaacTAGTTGTAGCTCTATCTTAGGTACA
GTgggtctccataactcgaacaggAACAAGGGagacacaaatttgttcga
gttaaggaaattttgagttatgaagtagggtttataaggcatttttaaCT
GAAAGAGCCATAAAacttattcgagttaaggagacattcgatttgtagat
gttcgagttaaagacACTCCACTGTATAATAGTACTATATTAAGACCCAA
taaaaatagaacgaaaatgaATTTACTGGTataattttttcataattttt
cttcCTTCTGTTTCTCTCGTTAGGTGCCAGAGTAAAGGTGGAAGTTCACA
AGTACTACCAAATGGTCAACGAAGAAGGCACCAATAATCACCAATATGAC
GGGAACTTGATGCAGGACTTGTACTACACGTGGCCGTTCGACATGTATGA
GTACGAACTTACGGATGATATAACACAGAAAGTATTCAACGTCATTCTCT
TAATCACAATTTTTGGAGAATTCTTCGCATCACCGTCAGAAACGTTTGCC
GATCTATATACGCTACGTGCTTTAGGCTCTAACCATAACCGCTATGGTTG
GCAAATAATATCTGGTTTATTTGGTTTCTTCATTGTTTCAATCGCTTTTG
CAGCGTCATCAGACATACGCTTACAGTTGAAAGATGATTTCTGTCATGTT
GGTCACGTGATCAATTACAGCCCTTATTTATTCGTAGTATACGGCCTTGT
TGGCGCATGTATCCTGATTGCCGCTACATTCCAATACCGCCTTTTTCCGA
AACCTACCGCCCCACGTAAAGATGACGGGTGTAATTGCGATTGTAATTTC
ATCAAGGCGTTACCAGTACTAGCAGAAACCCCCGCTTACACTGCATACGC
TATTGCTGTTATATTTTGTGGATTTGCCTGTGGTGTAAAACAGCTTTATA
TCTACCATTATCTTACAGAGCTGGGTGGTCCTCATCAGCTCATATTTGTA
GTTTTGAGTGTCCACTTTATATCAGGTTTCTTGGCACTCTTAGCGTCACC
CTACCTACTTGAGCGTTTTGGAGCATCAAATCTTATAGCAGGTGGTTTGC
TTTTGAATGGAATCTCATTTGTTGTATATTCACTCATCAAAAATCCATGG
TTGATCTTAATTGTTGAACCTTTCCATGGGCTCTGTCAAGAATTATCTTG
GGTCGCTATTGTCACTTACGCTGGTGCGCCGCCACAAATTGGGGCGGCTC
TACAGGGTACGGTACATGGTTTACATAAAGGTCTTGGACTAGCTTTAGGC
TATTATGCAGTATGTGTTTTAATCTTGAAATTTGGTTACGTCGGTTTCTT
TTTAGCTACtggtttgttattttttgttgtgtttggattttatttatttg
tcaTTCGAATGTATCCGAAAGAGGAAAGCATCGCGGACAGTTATAGTTGT
TATTCCAAGATTCATCAACAGGACGTGGACAGTGACGGCGAAGAGACGGT
TGAAATGTTTCAGAAAGGTGATTATAATAACGAAACATTGGATAGATCTT
TCTTAGAAtgattttggtttgatttagcGAGGTTGAGCATGAGGATATAC
AATATGCTTTTTTATACAACCTAATAGGTCTCAGTACTAAtttgataaat
ataattttcttgTAATTCGACATTAGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035645XLOC_035645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056576-exon-scaffold_277-1491911889:266111..266126TCONS_00056576-exon-scaffold_277-1491911889:266111..266126Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1510915933:266111..266126TCONS_00056576-exon-scaffold_277-1510915933:266111..266126Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1575043694:266111..266126TCONS_00056576-exon-scaffold_277-1575043694:266111..266126Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1491911889:274290..274721TCONS_00056576-exon-scaffold_277-1491911889:274290..274721Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1510915933:274290..274721TCONS_00056576-exon-scaffold_277-1510915933:274290..274721Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1575043694:274290..274721TCONS_00056576-exon-scaffold_277-1575043694:274290..274721Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1491911889:275284..276640TCONS_00056576-exon-scaffold_277-1491911889:275284..276640Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1510915933:275284..276640TCONS_00056576-exon-scaffold_277-1510915933:275284..276640Clytia hemisphaericaexon
TCONS_00056576-exon-scaffold_277-1575043694:275284..276640TCONS_00056576-exon-scaffold_277-1575043694:275284..276640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:266111..276640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.66172	6.00306	5.09071	5.11687	13.9782	14.2335	40.0486	36.6204	46.4768	44.5049	29.0302	22.7583	6.88336	5.00699	5.36543	5.01065	9.29243	10.8488	9.08744	10.1554	8.99606	8.00814	6.24788	6.47012	7.54405	6.40737	11.3115	7.77405	7.16901	5.99512
Blast
[Close]
BLAST of TCONS_00056576 vs. Swiss-Prot (Human)
Match: MFSD6 (Major facilitator superfamily domain-containing protein 6 OS=Homo sapiens GN=MFSD6 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.166e-21
Identity = 128/520 (24.62%), Postives = 212/520 (40.77%), Query Frame = 1 
Query:   58 INADHPLHKAKAFYFLFDAAIKTLPRHLGMYYKHTLLLSPHQVAMLLSVRPFLLIFGSPVLGGIADKTNKFRHVMLISLLTFLVTYVLVPLVEPVEGFNC----KEHVHFNHSANHINI-----STPVFHKLHKQIVS--NGARVKVEVHKYYQM-----VNEEGTNNHQYD--GNLMQDL--------------------------YYTWPFDMYEYELTDDITQKVFNVILLITIFGEFFASPSETFADLYTLRALGSNHNRYGWQIISGLFGFFIVSIAFAASSD---IRLQLKDDFCHVGHVINYSPYLFVVYGLVGACILIAAT---FQYRLFPKPTAPRKDDGCNCDCNFIK-----ALPVLAETPAYTAYAIA---------------------VIFCGFACGVKQLYIYHYLTELGGPHQLIFVVLSVHFISGFLALLASPYLLERFXXXXXXXXXXXXXXXXFVVYSLIKNPWLILIVEPFHGLCQELSWVAIVTY--AGAPPQIGAALQG 1383
            IN D  L  +K FYF F +A  +L   L +YYK  L +SP Q  +L+ +R F+    +P  G +AD+  K + V+L SLL +++  + +  V+P     C    +   H  ++++ + I     S   F  +  ++    N    ++ V     +     +N E T   Q     N M DL                            + P D           + +F VIL++ I GEFF++ S T  D  TL+ LG + +RYG Q + G  G+ +  ++     D   I + +    C      NY   +F+V+G++    LI AT   F+Y  F      + DD    +    +     +     ETP  T+++ A                       F GF  G    ++Y +L +L G   L  V   +  +S   A   S  L+E  G   ++  GL  N   ++  S ++N W +L +E   G+     W A ++Y  A  PP++  + QG
Sbjct:   64 INND--LLISKVFYFFFYSAYGSLYPLLPVYYKQ-LGMSPSQSGLLVGIRYFIEFCSAPFWGVVADRFKKGKIVLLFSLLCWVLFNLGIGFVKPAT-LRCVPKIRPTTHPTNASHQLTILPTNSSFTSFLTISPKMREKRNLLETRLNVSDTVTLPTAPNMNSEPTLQPQTGEITNRMMDLTLNSSTATPVSPGSVTKETTTVIVTTTKSLPSDQVMLVYDQQEVEAIFLVILVVVIIGEFFSASSVTIVDTVTLQYLGKHRDRYGLQRMWGSLGWGLAMLSVGIGIDYTHIEVLIDGKGCKPPEYRNYQ-IVFIVFGVLMTMALIVATQFRFRYNHF------KNDDSKGKEVEIPQVERNNSTESSEETPTTTSHSQAFNFWDLIKLLCSVQYGSVLFVAWFMGFGYGFVFTFLYWHLEDLNGTTTLFGVCSVLSHVSELTAYFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLSAAVPPELRTSAQG 572
The following BLAST results are available for this feature:
BLAST of TCONS_00056576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD61.166e-2124.62Major facilitator superfamily domain-containing pr... [more]
back to top