TCONS_00056612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056612
Unique NameTCONS_00056612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056612 ID=TCONS_00056612|Name=TCONS_00056612|organism=Clytia hemisphaerica|type=transcript|length=2319bp
gtttttttggTTTCTGGCAGGgaaaaaaaaagctgataaaaaAAAGAAAT
GAACGCGAACAACACGTGCAGACCACGTGCCAATACTACCGGTGATTTAC
CGAGCATCAATGACGAAAAACCGGTCACCTGTCCGGATTGGGGATGTGGT
TTTGATGAGCAAATCTATTCCCGTAGTTGGAGTAGTTCGGGATCAATTTC
TGACGTCACCGACGACTCTTTGGAAGATTCTATCGAGGATAAACATTTTG
CTAAAGCTTTGAATCAAGGTGTTTTTGGTGGCGTACACGAAAAAAATCGC
AAAgatcgcaaaaaaagttttgacaAGGATCACCATCATCATCATTCGCA
TAGTAACCGTGGTCACCATCACCACAGCAACGCCCTTAGCAACCATCATA
GTAATCATTATCACCAACGATCACAACGTTTTATTGATGATGATTTGTTG
AATAATAATTATCAACGACCTCGTAGTAAATCGATTGATTTGAAACTAAG
CTCTGGTGAAAAACACCACCACCATCATGGTAAAAAAGCcaattcaaaac
aaaggcgcTTACGTCAAGAGCTTTCCGACAGTGGCTTCAACTTGAATGAT
ACAACCGAAAAACTATCAATTGATGAAATCTACGAAATGCAAAACCGCTT
TNTTCAACTTGAATGATACAACCGAAAAACTATCCATTGATGAAATCTAC
GAAATGCAAAACCGCTTTTTCACATCTCTTAAACTGACAAATGATTATAT
TAGACAATGTTCGAACGACGAGTGTGGCTATATGGAAATGCCTTCGTCTC
CGGTCAGGAAAAATCGGAGTGTTTCTTTTCATTAGTGGACTTTGATGTCA
ATAAACTGAAATAATGACGGTGTTGTAATAAGGGTATTACATATTACATA
TTGTAGATCTTACTCCCGCTGGTGTTACAATATAATACGAAAAAGTTACT
GGTAATCTAACAGTAAAACAGCCTTTCCTGtattataactttttttatta
tgCCCTGAAATATTGGGCTCTTGTTATGGTATCATTGTGTTTGTATATAT
ATAAACTCTTGGGTTCATCTTTAGTACAGAAAATGATTAAGACGTATTAT
GATGTTGTGTTACATGTTGTGTTATATCAACCTTTTATGCTACTTTTTGG
TACTGTGTTTGGTAACCCATTAAAGACATGCATCTTACTATTGTGTTATG
GTAATATGACATTTTATTATGGATTATGAATCTCCGTTTTGGTCGAGata
tattttccattttttataatagacaatgaaaaaattaaaaaattggttTG
GTATTATGATATTACAGTGATACAATATTACATAANAGatatattttcca
ttttttataatagacaatgaaaaaattaaaaaattggttTGGTATTATAA
TATTACAGTGATACAATATCATATTATATACAATATTATAATGAACGTTT
TTACTAAGTTGAGATATTATGATGATATTATATTTGGTTTTGTAGatagt
atacatattttttatCATATATTTTCTGAATTGAATTTCAATCATCCTTG
GATTTCCCGAACTAATTTAAATCTCAAGGACAACTGAAGATATTACTTAT
CGGACTAATTTTTGCCGAGATTTGATTTCAAAAGGCAAAATAATCGCGAA
ACTTTTctggattaattttcgaaaattagcAATTTAAAAAATCGTTTGAC
AGTCGATAAGATTTATACAAAGAAAGAGCTTTCAAGCTTTAAGTCTAAGG
TCAAGTGAATTTGAAGCCCGGGAGGGTATTACCCTTGCcaaccgacgggg
gtgctccgctgaggttcgaaaaatggaccctacgagtgggactcgttttt
tcaataatttttccgaaatttgcgaaaaaattgaccctgaatgggactga
aattccaaaattttctcaaattttctactttttccccaaattatccaaaa
aaggcaccctacgagggactgatttttctattttggtgtttttgcgaccc
taccttggactcgtggaggttaaaaaaggtacgcTGACCAGCTGCtaatc
cccgtaacccatttttcCCTAGTACCCCCCAGGATTTGAAGTCTTGGTCA
AGTTATTTCAGTTTCAAATTTTGTAATATAtttgtaaaaaagaatttttN
CCCCCCAGCATTTGAAGTCTTGGTCAAGTTATTTCAGTTTCAAATTTTGT
AATATAtttgtaaaaaagaattttttgaaatttattaacTGTACGTAGTC
AAAAAGGTGGATTAGATTTCACCAaaaaaatgatgatgatgacaaAAAAT
ACAGGTATCATAATAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_277:302838..307143-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056612 ID=TCONS_00056612|Name=TCONS_00056612|organism=Clytia hemisphaerica|type=transcript|length=4306bp|location=Sequence derived from alignment at scaffold_277:302838..307143- (Clytia hemisphaerica)
GTTTTTTTGGTTTCTGGCAGGGAAAAAAAAAGCTGATAAAAAAAAGGTGA
TAACAATTTTCTCTGAACGATATCTTTTCGCGATATTCGCTTTCAAATGA
TTATAAATTGATAGCTGAAAGTCTGATATATTTTTTGTTTCGTTTTTCAT
TCCTAACGGTCGATAGTGTTCACACCTTTTTCCTTAAAAAAATGTTTTTT
TGGATATTTTCTTTTCTCTAGTTCGATTGGAAATGGCCGAAATTTGAGGC
TCTATTGATAGCCAAGGTTCAAAGGCCAGTCAGTAGAAGATATAACAAAC
ATGCTCGTCTTTGCCTATCGCCTGTTTTTTAGGTTTCCAAGTTAAAATGT
CTTTTATTGTATAAGCTCCCCCTCCCGTCAATTCACATATTGTATTCACG
GAATTTCTTTTGAAATTCACGCAATTTCTGTTCACGCAATTCTTTTCATT
TACGCATTCACGCGAACCGCCTGGGGACTCCCTTGTATTTGCTGGGAATA
AAGGTCTTATTGAGTTAGTGGTTCACTAGCCTTTTACCTACTTTTTGCTT
CAATGTGACTATACTATCATATTGTGACAAGCTTGTGGCCTTGTATCCAA
AAAAAATGTTATTAAGTCTGTGGTCAATATGTCACTACCTTTCCGGATCC
GTTGCTAGCTTATCGACAACGTCGCAAAAAAATTTTGACATTTTGATGAC
GTCAACAAATATGGTTGATTATTTTTTTGCGATTCCTTTTACACTAAAAT
AAACAAATAAGATTTTCGCGGTGAACAAAACTACGTTATAAGCAGTTATA
AGAATTGTTATGTGGAAATTGTTTTAATTTGATTTCTGGTTATTCACCCA
CAGTTTTCCGAAATCCGTTATAATGATTTGGCTTTTTGGTTTTCTAGTGG
TGTTCAACTTTATACTTAAATTCTATTTTGAATTGTTGGTTTTAGTCCCG
TTTTAGTGTCTGATCAGGATTTCAATACATAATTTTTATGAATCTTATAA
AAAAAGTCTCCATTTTGTTTTTCTCGTTTAAATCCTGGATAACCTGACAG
TTGACAGTCAGCCTGTATATAGACATTTGCAGCCCTTGATTCTATTTGTT
TTGATTGACGTCACTTATTTTGAGAGGACCTTATATATTGACTTGATCAA
GACTGTTGTTGCAGCAGACCTGAGTTGTAATGGATCAGGCCTGTGTGTTT
TGTAGAAACATGACTTTGAGGGTTTTGATTGAGCTTTGTACTATTGCTAT
GTTTTACATCTTTATCGTCCGCTTTACAATCTAACAGCAAAACATTTTTT
CAACGTCCATCTAACGTTATTGAGATTTTTGATTTTACTGAGCGTGATAC
CTTTCGTGAACGCTATCAGAATCTTATAAAAGTGAACTGAGGGATGTTAT
GTACCAGCCTGTTTTATGAATTTAACAGTTTGGTATTTCGCGATTGCCAT
ACATAGGTTTTATCTATTGAAGTGTTTTGGATCCGAAAGGACACAAAAGT
CTCCTTAACTCGGAACACGCAGGGGGGGGGACATAAATTTGTTCGAGTTA
CGGACATTTCGAGTTATGGAGTACGGTTTATAAGGCATTGTTAGCTGAAG
GGACGCAATTCATGATATTCATGATGTAATCTTTTATACGGAAGCACACA
AAATAATCCGGAATTAGTGGCAAAATTAGTGGCAAAATTTGCCACTAGTC
TTTTGTTATTCTGCCACTAGTTCCGGTTTATCTCGGGTGCTTCCGTATAA
AAGATTACGTCATGAATATCATGAATATCTTGTTCGAGTTAAGGAGACAT
TCGAATTATACTGTATAACATGGGATGTGATTCTCATGTACAACGGTATT
AATAGGCCAGCGTCCGAGATTCAGTTTTGCTGCCTTTTCATTTTCACTAC
CTCGGCCGCTGGTCTATAATCAAAAAGAATTTGAAATGTTTTTGGAGCTG
GGGCTAAATCTCTGTCTGTAGAGTGTCTCTTATTTGGAGTACACTGTATG
ACAAACTATGTTTTTTTCTTTTCTCGTTTCCAGAAATGAACGCGAACAAC
ACGTGCAGACCACGTGCCAATACTACCGGTGATTTACCGAGCATCAATGA
CGAAAAACCGGTCACCTGTCCGGATTGGGGATGTGGTTTTGATGAGCAAA
TCTATTCCCGTAGTTGGAGTAGTTCGGGATCAATTTCTGACGTCACCGAC
GACTCTTTGGAAGATTCTATCGAGGATAAACATTTTGCTAAAGCTTTGAA
TCAAGGTGTTTTTGGTGGCGTACACGAAAAAAATCGCAAAGATCGCAAAA
AAAGTTTTGACAAGGATCACCATCATCATCATTCGCATAGTAACCGTGGT
CACCATCACCACAGCAACGCCCTTAGCAACCATCATAGTAATCATTATCA
CCAACGATCACAACGTTTTATTGATGATGATTTGTTGAATAATAATTATC
AACGACCTCGTAGTAAATCGATTGATTTGAAACTAAGCTCTGGTGAAAAA
CACCACCACCATCATGGTAAAAAAGCCAATTCAAAACAAAGGCGCTTACG
TCAAGAGCTTTCCGACAGTGGCTTCAACTTGAATGATACAACCGAAAAAC
TATCAATTGATGAAATCTACGAAATGCAAAACCGCTTTNTTCAACTTGAA
TGATACAACCGAAAAACTATCCATTGATGAAATCTACGAAATGCAAAACC
GCTTTTTCACATCTCTTAAACTGACAAATGATTATATTAGACAATGTTCG
AACGACGAGTGTGGCTATATGGAAATGCCTTCGTCTCCGGTCAGGAAAAA
TCGGAGTGTTTCTTTTCATTAGTGGACTTTGATGTCAATAAACTGAAATA
ATGACGGTGTTGTAATAAGGGTATTACATATTACATATTGTAGATCTTAC
TCCCGCTGGTGTTACAATATAATACGAAAAAGTTACTGGTAATCTAACAG
TAAAACAGCCTTTCCTGTATTATAACTTTTTTTATTATGCCCTGAAATAT
TGGGCTCTTGTTATGGTATCATTGTGTTTGTATATATATAAACTCTTGGG
TTCATCTTTAGTACAGAAAATGATTAAGACGTATTATGATGTTGTGTTAC
ATGTTGTGTTATATCAACCTTTTATGCTACTTTTTGGTACTGTGTTTGGT
AACCCATTAAAGACATGCATCTTACTATTGTGTTATGGTAATATGACATT
TTATTATGGATTATGAATCTCCGTTTTGGTCGAGATATATTTTCCATTTT
TTATAATAGACAATGAAAAAATTAAAAAATTGGTTTGGTATTATGATATT
ACAGTGATACAATATTACATAANAGATATATTTTCCATTTTTTATAATAG
ACAATGAAAAAATTAAAAAATTGGTTTGGTATTATAATATTACAGTGATA
CAATATCATATTATATACAATATTATAATGAACGTTTTTACTAAGTTGAG
ATATTATGATGATATTATATTTGGTTTTGTAGATAGTATACATATTTTTT
ATCATATATTTTCTGAATTGAATTTCAATCATCCTTGGATTTCCCGAACT
AATTTAAATCTCAAGGACAACTGAAGATATTACTTATCGGACTAATTTTT
GCCGAGATTTGATTTCAAAAGGCAAAATAATCGCGAAACTTTTCTGGATT
AATTTTCGAAAATTAGCAATTTAAAAAATCGTTTGACAGTCGATAAGATT
TATACAAAGAAAGAGCTTTCAAGCTTTAAGTCTAAGGTCAAGTGAATTTG
AAGCCCGGGAGGGTATTACCCTTGCCAACCGACGGGGGTGCTCCGCTGAG
GTTCGAAAAATGGACCCTACGAGTGGGACTCGTTTTTTCAATAATTTTTC
CGAAATTTGCGAAAAAATTGACCCTGAATGGGACTGAAATTCCAAAATTT
TCTCAAATTTTCTACTTTTTCCCCAAATTATCCAAAAAAGGCACCCTACG
AGGGACTGATTTTTCTATTTTGGTGTTTTTGCGACCCTACCTTGGACTCG
TGGAGGTTAAAAAAGGTACGCTGACCAGCTGCTAATCCCCGTAACCCATT
TTTCCCTAGTACCCCCCAGGATTTGAAGTCTTGGTCAAGTTATTTCAGTT
TCAAATTTTGTAATATATTTGTAAAAAAGAATTTTTNCCCCCCAGCATTT
GAAGTCTTGGTCAAGTTATTTCAGTTTCAAATTTTGTAATATATTTGTAA
AAAAGAATTTTTTGAAATTTATTAACTGTACGTAGTCAAAAAGGTGGATT
AGATTTCACCAAAAAAATGATGATGATGACAAAAAATACAGGTATCATAA
TAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035654XLOC_035654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056612-exon-scaffold_277-1575043694:307098..307143TCONS_00056612-exon-scaffold_277-1575043694:307098..307143Clytia hemisphaericaexon
TCONS_00056612-exon-scaffold_277-1575043694:302838..305110TCONS_00056612-exon-scaffold_277-1575043694:302838..305110Clytia hemisphaericaexon
TCONS_00056612-exon-scaffold_277-1510915933:307098..307143TCONS_00056612-exon-scaffold_277-1510915933:307098..307143Clytia hemisphaericaexon
TCONS_00056612-exon-scaffold_277-1510915933:302838..305110TCONS_00056612-exon-scaffold_277-1510915933:302838..305110Clytia hemisphaericaexon
TCONS_00056612-exon-scaffold_277-1491911889:307098..307143TCONS_00056612-exon-scaffold_277-1491911889:307098..307143Clytia hemisphaericaexon
TCONS_00056612-exon-scaffold_277-1491911889:302838..305110TCONS_00056612-exon-scaffold_277-1491911889:302838..305110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:302838..307143 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65509	0.861521	0.981528	0.70068	0.258543	0.744824	1.49884	0	2.93981	3.42324	2.00986	2.89893	1.53143	3.65738	15.037	5.54404	2.14652	4.30448	9.3569	1.99729	0.323523	0.575899	0.674301	1.40045	0	0	2.80993	6.07459	1.45366	0.182105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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