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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056613 ID=TCONS_00056613|Name=TCONS_00056613|organism=Clytia hemisphaerica|type=transcript|length=2541bp
gtttttcctgattttttttgaatttttttttttttgataatttttttatt
cttttacatAGATAGTAACATCAAATAAAACACGTgtgaaaattataaaa
gaaaataatgagaaataaacgatgaaaaataaatgaagaaaatatattct
tgatatttggttgtttttccATAATTTTCTTCGCTAAGAAAAGAGGAAAA
GGAAACATTGAAAACGTTGGATTACTTTTATGGCGTTTTTCATTAGGAGA
GCAAACATAACAATTGACAAATGAACGCGAACAACACGTGCAGACCACGT
GCCAATACTACCGGTGATTTACCGAGCATCAATGACGAAAAACCGGTCAC
CTGTCCGGATTGGGGATGTGGTTTTGATGAGCAAATCTATTCCCGTAGTT
GGAGTAGTTCGGGATCAATTTCTGACGTCACCGACGACTCTTTGGAAGAT
TCTATCGAGGATAAACATTTTGCTAAAGCTTTGAATCAAGGTGTTTTTGG
TGGCGTACACGAAAAAAATCGCAAAgatcgcaaaaaaagttttgacaAGG
ATCACCATCATCATCATTCGCATAGTAACCGTGGTCACCATCACCACAGC
AACGCCCTTAGCAACCATCATAGTAATCATTATCACCAACGATCACAACG
TTTTATTGATGATGATTTGTTGAATAATAATTATCAACGACCTCGTAGTA
AATCGATTGATTTGAAACTAAGCTCTGGTGAAAAACACCACCACCATCAT
GGTAAAAAAGCcaattcaaaacaaaggcgcTTACGTCAAGAGCTTTCCGA
CAGTGGCTTCAACTTGAATGATACAACCGAAAAACTATCAATTGATGAAA
TCTACGAAATGCAAAACCGCTTTNTTCAACTTGAATGATACAACCGAAAA
ACTATCCATTGATGAAATCTACGAAATGCAAAACCGCTTTTTCACATCTC
TTAAACTGACAAATGATTATATTAGACAATGTTCGAACGACGAGTGTGGC
TATATGGAAATGCCTTCGTCTCCGGTCAGGAAAAATCGGAGTGTTTCTTT
TCATTAGTGGACTTTGATGTCAATAAACTGAAATAATGACGGTGTTGTAA
TAAGGGTATTACATATTACATATTGTAGATCTTACTCCCGCTGGTGTTAC
AATATAATACGAAAAAGTTACTGGTAATCTAACAGTAAAACAGCCTTTCC
TGtattataactttttttattatgCCCTGAAATATTGGGCTCTTGTTATG
GTATCATTGTGTTTGTATATATATAAACTCTTGGGTTCATCTTTAGTACA
GAAAATGATTAAGACGTATTATGATGTTGTGTTACATGTTGTGTTATATC
AACCTTTTATGCTACTTTTTGGTACTGTGTTTGGTAACCCATTAAAGACA
TGCATCTTACTATTGTGTTATGGTAATATGACATTTTATTATGGATTATG
AATCTCCGTTTTGGTCGAGatatattttccattttttataatagacaatg
aaaaaattaaaaaattggttTGGTATTATGATATTACAGTGATACAATAT
TACATAANAGatatattttccattttttataatagacaatgaaaaaatta
aaaaattggttTGGTATTATAATATTACAGTGATACAATATCATATTATA
TACAATATTATAATGAACGTTTTTACTAAGTTGAGATATTATGATGATAT
TATATTTGGTTTTGTAGatagtatacatattttttatCATATATTTTCTG
AATTGAATTTCAATCATCCTTGGATTTCCCGAACTAATTTAAATCTCAAG
GACAACTGAAGATATTACTTATCGGACTAATTTTTGCCGAGATTTGATTT
CAAAAGGCAAAATAATCGCGAAACTTTTctggattaattttcgaaaatta
gcAATTTAAAAAATCGTTTGACAGTCGATAAGATTTATACAAAGAAAGAG
CTTTCAAGCTTTAAGTCTAAGGTCAAGTGAATTTGAAGCCCGGGAGGGTA
TTACCCTTGCcaaccgacgggggtgctccgctgaggttcgaaaaatggac
cctacgagtgggactcgttttttcaataatttttccgaaatttgcgaaaa
aattgaccctgaatgggactgaaattccaaaattttctcaaattttctac
tttttccccaaattatccaaaaaaggcaccctacgagggactgatttttc
tattttggtgtttttgcgaccctaccttggactcgtggaggttaaaaaag
gtacgcTGACCAGCTGCtaatccccgtaacccatttttcCCTAGTACCCC
CCAGGATTTGAAGTCTTGGTCAAGTTATTTCAGTTTCAAATTTTGTAATA
TAtttgtaaaaaagaatttttNCCCCCCAGCATTTGAAGTCTTGGTCAAG
TTATTTCAGTTTCAAATTTTGTAATATAtttgtaaaaaagaattttttga
aatttattaacTGTACGTAGTCAAAAAGGTGGATTAGATTTCACCAaaaa
aatgatgatgatgacaaAAAATACAGGTATCATAATAAAAT Run BLAST on NCBI transcript from alignment at scaffold_277:302838..308328- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056613 ID=TCONS_00056613|Name=TCONS_00056613|organism=Clytia hemisphaerica|type=transcript|length=5491bp|location=Sequence derived from alignment at scaffold_277:302838..308328- (Clytia hemisphaerica)
GTTTTTCCTGATTTTTTTTGAATTTTTTTTTTTTTGATAATTTTTTTATT
CTTTTACATAGATAGTAACATCAAATAAAACACGTGTGAAAATTATAAAA
GAAAATAATGAGAAATAAACGATGAAAAATAAATGAAGAAAATATATTCT
TGATATTTGGTTGTTTTTCCATAATTTTCTTCGCTAAGAAAAGAGGAAAA
GGAAACATTGAAAACGTTGGATTACTTTTATGGCGTTTTTCATTAGGAGA
GCAAACATAACAATTGACGTAAGTAGAACTCCTTTTGATAGAGCCAAAAT
ACTATATTTTTAGCTTTCAACTTGAGACTAGCTCTAGACGATTCCAGGGT
CCAGGAATTTAAAGGTTTATTATTGCACAAGTGTTCCCGTTTCATATCAG
ACACCTATTTCATATCGGGACAGTGTCTGCCTATTGTTATATTGGGCTAA
TATAAGCAAACAAAATGTTTTTCTTTTCCTCTTTCTGACTAATCTTGCTC
CACATTCATGTCAATCCAATGTGAAAAAGCTTATGTGAATTAAATTGATG
AGTAAGCAAACAATATCACTCTTATTTAAAATCAAAACCTTTAAGTTTTT
GGCTAGCGAAGTCTTATGTTCTTATATAGTTTGTTCTTATAAAAACGTGT
AGAACGGCAATCTTGAAAACAATCTTCGTTAAAAAACAAGTTTTGGAATG
ATTGCGGTAAGCTCTTTCAGGTCGACACAAATTCAGGTTATCAAAACGGG
TTATCAGAATAAGTTGTTTTTAAAGCCAAAATATCTAAACCAGATGTGGT
ATAATTAACATGTCATTAAGAATAAAACAGAGTTATAAAAAGCATATTCC
CAATAGAGAACTAAGAAAAAATATATTGCAATCTTGTTTTTTTCCACTTT
TTTTTTTACATAAGAACAAAGTATATAAGAACATAGGATTTTAAGGTTAG
AAATTTGAGAGATTTCTAAGAAAATTCAAAACGTGCAACTTCTTCGGAAA
TTAGACCAAATACTCACTCAAAATATGCTGAAAATAAGAACATGTTGAGA
ACATTTTTAGGCTTAAAACCTGAAGAGTTAAGAACATTCGAATGATCTTT
CGACGTTCTTATAAAAAATATTGCATGATACTTAATTTAAATTAAAGAGA
GAAGAAAATTATTTTCTTATCATCAATATCTTTCTGTTTTTTTGGTTTCT
GGCAGGGAAAAAAAAAGCTGATAAAAAAAAGGTGATAACAATTTTCTCTG
AACGATATCTTTTCGCGATATTCGCTTTCAAATGATTATAAATTGATAGC
TGAAAGTCTGATATATTTTTTGTTTCGTTTTTCATTCCTAACGGTCGATA
GTGTTCACACCTTTTTCCTTAAAAAAATGTTTTTTTGGATATTTTCTTTT
CTCTAGTTCGATTGGAAATGGCCGAAATTTGAGGCTCTATTGATAGCCAA
GGTTCAAAGGCCAGTCAGTAGAAGATATAACAAACATGCTCGTCTTTGCC
TATCGCCTGTTTTTTAGGTTTCCAAGTTAAAATGTCTTTTATTGTATAAG
CTCCCCCTCCCGTCAATTCACATATTGTATTCACGGAATTTCTTTTGAAA
TTCACGCAATTTCTGTTCACGCAATTCTTTTCATTTACGCATTCACGCGA
ACCGCCTGGGGACTCCCTTGTATTTGCTGGGAATAAAGGTCTTATTGAGT
TAGTGGTTCACTAGCCTTTTACCTACTTTTTGCTTCAATGTGACTATACT
ATCATATTGTGACAAGCTTGTGGCCTTGTATCCAAAAAAAATGTTATTAA
GTCTGTGGTCAATATGTCACTACCTTTCCGGATCCGTTGCTAGCTTATCG
ACAACGTCGCAAAAAAATTTTGACATTTTGATGACGTCAACAAATATGGT
TGATTATTTTTTTGCGATTCCTTTTACACTAAAATAAACAAATAAGATTT
TCGCGGTGAACAAAACTACGTTATAAGCAGTTATAAGAATTGTTATGTGG
AAATTGTTTTAATTTGATTTCTGGTTATTCACCCACAGTTTTCCGAAATC
CGTTATAATGATTTGGCTTTTTGGTTTTCTAGTGGTGTTCAACTTTATAC
TTAAATTCTATTTTGAATTGTTGGTTTTAGTCCCGTTTTAGTGTCTGATC
AGGATTTCAATACATAATTTTTATGAATCTTATAAAAAAAGTCTCCATTT
TGTTTTTCTCGTTTAAATCCTGGATAACCTGACAGTTGACAGTCAGCCTG
TATATAGACATTTGCAGCCCTTGATTCTATTTGTTTTGATTGACGTCACT
TATTTTGAGAGGACCTTATATATTGACTTGATCAAGACTGTTGTTGCAGC
AGACCTGAGTTGTAATGGATCAGGCCTGTGTGTTTTGTAGAAACATGACT
TTGAGGGTTTTGATTGAGCTTTGTACTATTGCTATGTTTTACATCTTTAT
CGTCCGCTTTACAATCTAACAGCAAAACATTTTTTCAACGTCCATCTAAC
GTTATTGAGATTTTTGATTTTACTGAGCGTGATACCTTTCGTGAACGCTA
TCAGAATCTTATAAAAGTGAACTGAGGGATGTTATGTACCAGCCTGTTTT
ATGAATTTAACAGTTTGGTATTTCGCGATTGCCATACATAGGTTTTATCT
ATTGAAGTGTTTTGGATCCGAAAGGACACAAAAGTCTCCTTAACTCGGAA
CACGCAGGGGGGGGGACATAAATTTGTTCGAGTTACGGACATTTCGAGTT
ATGGAGTACGGTTTATAAGGCATTGTTAGCTGAAGGGACGCAATTCATGA
TATTCATGATGTAATCTTTTATACGGAAGCACACAAAATAATCCGGAATT
AGTGGCAAAATTAGTGGCAAAATTTGCCACTAGTCTTTTGTTATTCTGCC
ACTAGTTCCGGTTTATCTCGGGTGCTTCCGTATAAAAGATTACGTCATGA
ATATCATGAATATCTTGTTCGAGTTAAGGAGACATTCGAATTATACTGTA
TAACATGGGATGTGATTCTCATGTACAACGGTATTAATAGGCCAGCGTCC
GAGATTCAGTTTTGCTGCCTTTTCATTTTCACTACCTCGGCCGCTGGTCT
ATAATCAAAAAGAATTTGAAATGTTTTTGGAGCTGGGGCTAAATCTCTGT
CTGTAGAGTGTCTCTTATTTGGAGTACACTGTATGACAAACTATGTTTTT
TTCTTTTCTCGTTTCCAGAAATGAACGCGAACAACACGTGCAGACCACGT
GCCAATACTACCGGTGATTTACCGAGCATCAATGACGAAAAACCGGTCAC
CTGTCCGGATTGGGGATGTGGTTTTGATGAGCAAATCTATTCCCGTAGTT
GGAGTAGTTCGGGATCAATTTCTGACGTCACCGACGACTCTTTGGAAGAT
TCTATCGAGGATAAACATTTTGCTAAAGCTTTGAATCAAGGTGTTTTTGG
TGGCGTACACGAAAAAAATCGCAAAGATCGCAAAAAAAGTTTTGACAAGG
ATCACCATCATCATCATTCGCATAGTAACCGTGGTCACCATCACCACAGC
AACGCCCTTAGCAACCATCATAGTAATCATTATCACCAACGATCACAACG
TTTTATTGATGATGATTTGTTGAATAATAATTATCAACGACCTCGTAGTA
AATCGATTGATTTGAAACTAAGCTCTGGTGAAAAACACCACCACCATCAT
GGTAAAAAAGCCAATTCAAAACAAAGGCGCTTACGTCAAGAGCTTTCCGA
CAGTGGCTTCAACTTGAATGATACAACCGAAAAACTATCAATTGATGAAA
TCTACGAAATGCAAAACCGCTTTNTTCAACTTGAATGATACAACCGAAAA
ACTATCCATTGATGAAATCTACGAAATGCAAAACCGCTTTTTCACATCTC
TTAAACTGACAAATGATTATATTAGACAATGTTCGAACGACGAGTGTGGC
TATATGGAAATGCCTTCGTCTCCGGTCAGGAAAAATCGGAGTGTTTCTTT
TCATTAGTGGACTTTGATGTCAATAAACTGAAATAATGACGGTGTTGTAA
TAAGGGTATTACATATTACATATTGTAGATCTTACTCCCGCTGGTGTTAC
AATATAATACGAAAAAGTTACTGGTAATCTAACAGTAAAACAGCCTTTCC
TGTATTATAACTTTTTTTATTATGCCCTGAAATATTGGGCTCTTGTTATG
GTATCATTGTGTTTGTATATATATAAACTCTTGGGTTCATCTTTAGTACA
GAAAATGATTAAGACGTATTATGATGTTGTGTTACATGTTGTGTTATATC
AACCTTTTATGCTACTTTTTGGTACTGTGTTTGGTAACCCATTAAAGACA
TGCATCTTACTATTGTGTTATGGTAATATGACATTTTATTATGGATTATG
AATCTCCGTTTTGGTCGAGATATATTTTCCATTTTTTATAATAGACAATG
AAAAAATTAAAAAATTGGTTTGGTATTATGATATTACAGTGATACAATAT
TACATAANAGATATATTTTCCATTTTTTATAATAGACAATGAAAAAATTA
AAAAATTGGTTTGGTATTATAATATTACAGTGATACAATATCATATTATA
TACAATATTATAATGAACGTTTTTACTAAGTTGAGATATTATGATGATAT
TATATTTGGTTTTGTAGATAGTATACATATTTTTTATCATATATTTTCTG
AATTGAATTTCAATCATCCTTGGATTTCCCGAACTAATTTAAATCTCAAG
GACAACTGAAGATATTACTTATCGGACTAATTTTTGCCGAGATTTGATTT
CAAAAGGCAAAATAATCGCGAAACTTTTCTGGATTAATTTTCGAAAATTA
GCAATTTAAAAAATCGTTTGACAGTCGATAAGATTTATACAAAGAAAGAG
CTTTCAAGCTTTAAGTCTAAGGTCAAGTGAATTTGAAGCCCGGGAGGGTA
TTACCCTTGCCAACCGACGGGGGTGCTCCGCTGAGGTTCGAAAAATGGAC
CCTACGAGTGGGACTCGTTTTTTCAATAATTTTTCCGAAATTTGCGAAAA
AATTGACCCTGAATGGGACTGAAATTCCAAAATTTTCTCAAATTTTCTAC
TTTTTCCCCAAATTATCCAAAAAAGGCACCCTACGAGGGACTGATTTTTC
TATTTTGGTGTTTTTGCGACCCTACCTTGGACTCGTGGAGGTTAAAAAAG
GTACGCTGACCAGCTGCTAATCCCCGTAACCCATTTTTCCCTAGTACCCC
CCAGGATTTGAAGTCTTGGTCAAGTTATTTCAGTTTCAAATTTTGTAATA
TATTTGTAAAAAAGAATTTTTNCCCCCCAGCATTTGAAGTCTTGGTCAAG
TTATTTCAGTTTCAAATTTTGTAATATATTTGTAAAAAAGAATTTTTTGA
AATTTATTAACTGTACGTAGTCAAAAAGGTGGATTAGATTTCACCAAAAA
AATGATGATGATGACAAAAAATACAGGTATCATAATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056613-exon-scaffold_277-1575043694:308061..308328 | TCONS_00056613-exon-scaffold_277-1575043694:308061..308328 | Clytia hemisphaerica | exon |
| TCONS_00056613-exon-scaffold_277-1575043694:302838..305110 | TCONS_00056613-exon-scaffold_277-1575043694:302838..305110 | Clytia hemisphaerica | exon |
| TCONS_00056613-exon-scaffold_277-1510915933:308061..308328 | TCONS_00056613-exon-scaffold_277-1510915933:308061..308328 | Clytia hemisphaerica | exon |
| TCONS_00056613-exon-scaffold_277-1510915933:302838..305110 | TCONS_00056613-exon-scaffold_277-1510915933:302838..305110 | Clytia hemisphaerica | exon |
| TCONS_00056613-exon-scaffold_277-1491911889:308061..308328 | TCONS_00056613-exon-scaffold_277-1491911889:308061..308328 | Clytia hemisphaerica | exon |
| TCONS_00056613-exon-scaffold_277-1491911889:302838..305110 | TCONS_00056613-exon-scaffold_277-1491911889:302838..305110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_277 | supercontig | scaffold_277:302838..308328 - |
Blast
The following BLAST results are available for this feature:
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