Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=transcript|length=2527bp CATGGTCAgtaattgattttgaatttctttttttaaagcctTATCACATT CTATTATATCTTATTATGTGATTTCCTTTGCCTATTACGAATCGTGTCTT ACAACCTTTTGAGTTGTTATACTATAATTAAAGACATACTTTGACTGTAT GTGAGCTTTGTATCAAGACAAACtgatattttatttctttctgGTCTATG GTTTGACTTTAGAGTAACGATTTAGGTCTCTGTTCGCGTCATCGAGCaaa tatgttcaaaaaattTAGAGAGAGGCAATAAAGATGTGGAAGTTGGCCGC AAACGATGTTACAAAAATCGAATGAAAAACCTCAAATTCAATTTTGGAGG AATAGTACTAGAGAAAATTGTCACTTTTTACGCCGTATTCAATCGATCTA TAGAAGGTTTAAGTGGAAAATGTCTTTTAAACAAATGTCAACTTGTAGAA AGAACACAGTTTGTGCTTTTGTATGGACTTCATGTACTTTTTGCTTACTT ATGCATTCGTCAGTGGATATTCATTGGTCGCATGTAACAACAACACCAAT GTACACCACAAAGTCTATTCAAAACATGCAGACTTTGAATAATGGTGTTA AACAAAGGCTTTATGTTGGAATATGGAAATATTGCGATATAGAACTTCAA ACTAATAAAATTTTAGGCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGT AATGTCGGAAAAAGAAATCGTGATACCTGAATGGCTTATGCTTTGTTGGG TTTTTATGTTTTGTGGACTCGTCATAAACTTGATGTCAGTATTCAATTTG CTTTATTCCATTTACACCAACAGTCGACAAAGACTCTGGCAATTTCTAAT ACAAGGATTTGTGACATTTTTCTCATTGGGAGTTGTTATACTATATAGTT TTAAAAATTCAGACTATAACAACCCTCAAACGGCTGATGGTGGATCAGAT TCGAACATTTCTTTTGAGCAACACCAACACTTTGAAGTATCTGAAAGATT TGCATTGAATTTTTACTTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGA ATTTGATCAAATTGACATTGaatctcaaaaaataaaatgactcttagaga aagttttgctgttttttttttcgtagtAGCTCGAATAAACGCCCAGGGCG TCCAAAGTCACTTTGATAGGGCGAGTGGGAATGTACAAATATATCCTTTT AGAGACGTAGAAGTAGATGAAAATCACTTTGATTGCTTTGATACAATAAT CAATAAATACTgaagttttcttttattcatgatattcatgacgtaatgtt ttcccGGTttgtagtggcaaattttatacaaattttgtctaatttaaatt tgccactactggctaaaaccgaggtatttccgtagaaaacattacgtcat gaatatcatgaatatgagAGTTCTCTTAAATCTTGATGTTTTAAACACCG AGTTGTTCAAAAATGTGTCTATATAGTTCAAATCTCGATTTAGAGCGCTA TTCAAGCGATAAATTTCAAACTTTGCATGACCAAAATTTAATCTAACTCC AGGGAACTCTCAAAAACTGCAATGTCGAACAAAACAGCTAGTTAGTTGCA GTTCTAATGATTGAAGATAGCATGAAAAGCGTTCTACGTCAAAGTTTATA CTTCGTGGACACAATTTCAGCCGATAAACGTCCCTTCTAGAGAGGAGGCG TTTATTTTGGGAGCCATCatataaaaaacttttcctttaatgaggggcgt ttattcgacgGGACAATCTAAAAAAGTTaccgtttattcgaagtaatgtA ATCGATTTTCGTCATTTTGGAACACTTATATTAGAAAGGGAAGTTTTTTG TACTTGGTGCAAAAAGGTACCTTATCTCTCGCACTACCTCTTTCCTAATT TGCCTAAGTTTCCTATCCCAGGGGTCGACACTGAGGCCATTTCGATTGAA CTGATTACATCGAAAAAAGGTAACaaaattacacccctgtgtcagggaaa aatagaatttctatctttATTGGAATTTCGCCGTGAGAagaagctccacc ggggctgcgagacaggggtgtgaaattttgatcaaatgaTGAAAATCTTT TAATAATGTGAGGGAgttttatactatttgtaagtttgtaaatattttaa atatttttcttttaatatctTCTTATAAATACATTTACAATTTTTCCCGC CGAAACTTttactaaaaaagagaaaaaatacaCTATAATAATGTGTACAA TATTCTTGAATTTTACATTAAACAACACTAGAAATATAGATTATCGCCCA GTCTCTTTTCTATCTTCCTAGCTTGTCTGTTGATGTATTTCCATGTGTTG ACCTCATGAGCATTTTCGTCATCTTGGGGTTGATAACATCAGTCTGGTGA ACTCTGTAGATAAAAAGTGGTAAATACATTATTACATTATAGCCACATTT TGATGTCGTTGACATTGACTGTCTCGAGAAATGGGCATGCGCCCGCCAAA GATTTTTCGAGAGATTTGAATAGTGAA Run BLAST on NCBI protein sequence of TCONS_00056647-protein >TCONS_00056647-protein ID=TCONS_00056647-protein|Name=TCONS_00056647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MLQKSNEKPQIQFWRNSTRENCHFLRRIQSIYRRFKWKMSFKQMSTCRKN TVCAFVWTSCTFCLLMHSSVDIHWSHVTTTPMYTTKSIQNMQTLNNGVKQ RLYVGIWKYCDIELQTNKILGCFKTAELFGGVMSEKEIVIPEWLMLCWVF MFCGLVINLMSVFNLLYSIYTNSRQRLWQFLIQGFVTFFSLGVVILYSFK NSDYNNPQTADGGSDSNISFEQHQHFEVSERFALNFYLVLLAGCISMANL IKLTLNLKK Run BLAST on NCBI transcript from alignment at scaffold_279:34346..37856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=transcript|length=3511bp|location=Sequence derived from alignment at scaffold_279:34346..37856+ (Clytia hemisphaerica) CATGGTCAgtaattgattttgaatttctttttttaaagcctTATCACATT
CTATTATATCTTATTATGTGATTTCCTTTGCCTATTACGAATCGTGTCTT
ACAACCTTTTGAGTTGTTATACTATAATTAAAGACATACTTTGACTGTAT
GTGAGCTTTGTATCAAGACAAACtgatattttatttctttctgGTCTATG
GTTTGACTTTAGAGTAACGATTTAGGTCTCTGTTCGCGTCATCGAGCaaa
tatgttcaaaaaattTAGGTAAGTTATGaaagttaaaatcttcatccttt
tttttttgcaattttgaacttgaaattgtttttatctAGGTAATCTAGGC
TTTAAATCATATTTTTACCCTTTATTTTCCTGTATTAATCTGGCTATCTG
ACTATCCCATACTCAAATTTGTTCTTAGATTATTCTTATTATCTGGTGTT
ATTGAGCCTGGTTGTTGTTATGAAATTGTTCTAATAAAGCACATTGCAGT
ATTTTTCTCTTACTTGCTATAATTTGTGTGAATTCGAAGATGTGAAGGCT
TTAAACAaacccggcggaacaaccgttaaaGAGGGGGAGGCTGaaagctc
aaaatgagataaaattcgctaggaatttgagaaaaaaatctcaatagCCT
TGgttgaagtctccccagtctccccgttCCCACCGGGCCTGTTAAAAATC
GTCAAAGATTGGTTGGTGATGCAATTTGAGCAAATGCAAAGTTCCAAAGT
TTTAGTCTGTGTTATAGTCTACATATATCAACACACTTGTTCGTCCTAGT
AGCGCATGACTTGACACAAAATGAAGCCACGGCTTCCGAAATCTTCATCA
TCAACGAAAATGTATCCTTTGTTATATAACAGGCGCTAGGACATCAAATT
ATCAAACAATATgatttaaaatattgataacCGGAGCTTATCATTTTATG
CTAGAATTTTCTCCTTCGTCGTCACATCGCATCAagagaaatattcaata
taagaaatcttttacatcgATATCTAAATTGAACAAAACCCCTCGACGCT
TATCCAGTCAGAGAGAGCTGTCTACTTTCAGTTTCACTTTCTGGAGATTT
GTGACAGTTTGGAGTAATAAAAAATTCTATCGATCATTCTCTCCAACATT
CCATATACTATAATAATTGATatctatactttacttttttgtaaaacaAC
ATATCTATAAGTATATGGTTGAAGTTTAATTTTCCATATATATTTTATAT
AGAGAGAGGCAATAAAGATGTGGAAGTTGGCCGCAAACGATGTTACAAAA
ATCGAATGAAAAACCTCAAATTCAATTTTGGAGGAATAGTACTAGAGAAA
ATTGTCACTTTTTACGCCGTATTCAATCGATCTATAGAAGGTTTAAGTGG
AAAATGTCTTTTAAACAAATGTCAACTTGTAGAAAGAACACAGTTTGTGC
TTTTGTATGGACTTCATGTACTTTTTGCTTACTTATGCATTCGTCAGTGG
ATATTCATTGGTCGCATGTAACAACAACACCAATGTACACCACAAAGTCT
ATTCAAAACATGCAGACTTTGAATAATGGTGTTAAACAAAGGCTTTATGT
TGGAATATGGAAATATTGCGATATAGAACTTCAAACTAATAAAATTTTAG
GCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGTAATGTCGGAAAAAGAA
ATCGTGATACCTGAATGGCTTATGCTTTGTTGGGTTTTTATGTTTTGTGG
ACTCGTCATAAACTTGATGTCAGTATTCAATTTGCTTTATTCCATTTACA
CCAACAGTCGACAAAGACTCTGGCAATTTCTAATACAAGGATTTGTGACA
TTTTTCTCATTGGGAGTTGTTATACTATATAGTTTTAAAAATTCAGACTA
TAACAACCCTCAAACGGCTGATGGTGGATCAGATTCGAACATTTCTTTTG
AGCAACACCAACACTTTGAAGTATCTGAAAGATTTGCATTGAATTTTTAC
TTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGAATTTGATCAAATTGAC
ATTGaatctcaaaaaataaaatgactcttagagaaagttttgctgttttt
tttttcgtagtAGCTCGAATAAACGCCCAGGGCGTCCAAAGTCACTTTGA
TAGGGCGAGTGGGAATGTACAAATATATCCTTTTAGAGACGTAGAAGTAG
ATGAAAATCACTTTGATTGCTTTGATACAATAATCAATAAATACTgaagt
tttcttttattcatgatattcatgacgtaatgttttcccGGTttgtagtg
gcaaattttatacaaattttgtctaatttaaatttgccactactggctaa
aaccgaggtatttccgtagaaaacattacgtcatgaatatcatgaatatg
agAGTTCTCTTAAATCTTGATGTTTTAAACACCGAGTTGTTCAAAAATGT
GTCTATATAGTTCAAATCTCGATTTAGAGCGCTATTCAAGCGATAAATTT
CAAACTTTGCATGACCAAAATTTAATCTAACTCCAGGGAACTCTCAAAAA
CTGCAATGTCGAACAAAACAGCTAGTTAGTTGCAGTTCTAATGATTGAAG
ATAGCATGAAAAGCGTTCTACGTCAAAGTTTATACTTCGTGGACACAATT
TCAGCCGATAAACGTCCCTTCTAGAGAGGAGGCGTTTATTTTGGGAGCCA
TCatataaaaaacttttcctttaatgaggggcgtttattcgacgGGACAA
TCTAAAAAAGTTaccgtttattcgaagtaatgtAATCGATTTTCGTCATT
TTGGAACACTTATATTAGAAAGGGAAGTTTTTTGTACTTGGTGCAAAAAG
GTACCTTATCTCTCGCACTACCTCTTTCCTAATTTGCCTAAGTTTCCTAT
CCCAGGGGTCGACACTGAGGCCATTTCGATTGAACTGATTACATCGAAAA
AAGGTAACaaaattacacccctgtgtcagggaaaaatagaatttctatct
ttATTGGAATTTCGCCGTGAGAagaagctccaccggggctgcgagacagg
ggtgtgaaattttgatcaaatgaTGAAAATCTTTTAATAATGTGAGGGAg
ttttatactatttgtaagtttgtaaatattttaaatatttttcttttaat
atctTCTTATAAATACATTTACAATTTTTCCCGCCGAAACTTttactaaa
aaagagaaaaaatacaCTATAATAATGTGTACAATATTCTTGAATTTTAC
ATTAAACAACACTAGAAATATAGATTATCGCCCAGTCTCTTTTCTATCTT
CCTAGCTTGTCTGTTGATGTATTTCCATGTGTTGACCTCATGAGCATTTT
CGTCATCTTGGGGTTGATAACATCAGTCTGGTGAACTCTGTAGATAAAAA
GTGGTAAATACATTATTACATTATAGCCACATTTTGATGTCGTTGACATT
GACTGTCTCGAGAAATGGGCATGCGCCCGCCAAAGATTTTTCGAGAGATT
TGAATAGTGAA Coding sequence (CDS) from alignment at scaffold_279:34346..37856+ >TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_279:34346..37856+ (Clytia hemisphaerica) ATGTTACAAAAATCGAATGAAAAACCTCAAATTCAATTTTGGAGGAATAG TACTAGAGAAAATTGTCACTTTTTACGCCGTATTCAATCGATCTATAGAA GGTTTAAGTGGAAAATGTCTTTTAAACAAATGTCAACTTGTAGAAAGAAC ACAGTTTGTGCTTTTGTATGGACTTCATGTACTTTTTGCTTACTTATGCA TTCGTCAGTGGATATTCATTGGTCGCATGTAACAACAACACCAATGTACA CCACAAAGTCTATTCAAAACATGCAGACTTTGAATAATGGTGTTAAACAA AGGCTTTATGTTGGAATATGGAAATATTGCGATATAGAACTTCAAACTAA TAAAATTTTAGGCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGTAATGT CGGAAAAAGAAATCGTGATACCTGAATGGCTTATGCTTTGTTGGGTTTTT ATGTTTTGTGGACTCGTCATAAACTTGATGTCAGTATTCAATTTGCTTTA TTCCATTTACACCAACAGTCGACAAAGACTCTGGCAATTTCTAATACAAG GATTTGTGACATTTTTCTCATTGGGAGTTGTTATACTATATAGTTTTAAA AATTCAGACTATAACAACCCTCAAACGGCTGATGGTGGATCAGATTCGAA CATTTCTTTTGAGCAACACCAACACTTTGAAGTATCTGAAAGATTTGCAT TGAATTTTTACTTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGAATTTG ATCAAATTGACATTGaatctcaaaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056647-exon-scaffold_279-1491911889:34346..34613 | TCONS_00056647-exon-scaffold_279-1491911889:34346..34613 | Clytia hemisphaerica | exon |
TCONS_00056647-exon-scaffold_279-1510915933:34346..34613 | TCONS_00056647-exon-scaffold_279-1510915933:34346..34613 | Clytia hemisphaerica | exon |
TCONS_00056647-exon-scaffold_279-1575043694:34346..34613 | TCONS_00056647-exon-scaffold_279-1575043694:34346..34613 | Clytia hemisphaerica | exon |
TCONS_00056647-exon-scaffold_279-1491911889:35598..37856 | TCONS_00056647-exon-scaffold_279-1491911889:35598..37856 | Clytia hemisphaerica | exon |
TCONS_00056647-exon-scaffold_279-1510915933:35598..37856 | TCONS_00056647-exon-scaffold_279-1510915933:35598..37856 | Clytia hemisphaerica | exon |
TCONS_00056647-exon-scaffold_279-1575043694:35598..37856 | TCONS_00056647-exon-scaffold_279-1575043694:35598..37856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_279 | supercontig | scaffold_279:34346..37856 + |
Blast
The following BLAST results are available for this feature:
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