TCONS_00056647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056647
Unique NameTCONS_00056647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=transcript|length=2527bp
CATGGTCAgtaattgattttgaatttctttttttaaagcctTATCACATT
CTATTATATCTTATTATGTGATTTCCTTTGCCTATTACGAATCGTGTCTT
ACAACCTTTTGAGTTGTTATACTATAATTAAAGACATACTTTGACTGTAT
GTGAGCTTTGTATCAAGACAAACtgatattttatttctttctgGTCTATG
GTTTGACTTTAGAGTAACGATTTAGGTCTCTGTTCGCGTCATCGAGCaaa
tatgttcaaaaaattTAGAGAGAGGCAATAAAGATGTGGAAGTTGGCCGC
AAACGATGTTACAAAAATCGAATGAAAAACCTCAAATTCAATTTTGGAGG
AATAGTACTAGAGAAAATTGTCACTTTTTACGCCGTATTCAATCGATCTA
TAGAAGGTTTAAGTGGAAAATGTCTTTTAAACAAATGTCAACTTGTAGAA
AGAACACAGTTTGTGCTTTTGTATGGACTTCATGTACTTTTTGCTTACTT
ATGCATTCGTCAGTGGATATTCATTGGTCGCATGTAACAACAACACCAAT
GTACACCACAAAGTCTATTCAAAACATGCAGACTTTGAATAATGGTGTTA
AACAAAGGCTTTATGTTGGAATATGGAAATATTGCGATATAGAACTTCAA
ACTAATAAAATTTTAGGCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGT
AATGTCGGAAAAAGAAATCGTGATACCTGAATGGCTTATGCTTTGTTGGG
TTTTTATGTTTTGTGGACTCGTCATAAACTTGATGTCAGTATTCAATTTG
CTTTATTCCATTTACACCAACAGTCGACAAAGACTCTGGCAATTTCTAAT
ACAAGGATTTGTGACATTTTTCTCATTGGGAGTTGTTATACTATATAGTT
TTAAAAATTCAGACTATAACAACCCTCAAACGGCTGATGGTGGATCAGAT
TCGAACATTTCTTTTGAGCAACACCAACACTTTGAAGTATCTGAAAGATT
TGCATTGAATTTTTACTTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGA
ATTTGATCAAATTGACATTGaatctcaaaaaataaaatgactcttagaga
aagttttgctgttttttttttcgtagtAGCTCGAATAAACGCCCAGGGCG
TCCAAAGTCACTTTGATAGGGCGAGTGGGAATGTACAAATATATCCTTTT
AGAGACGTAGAAGTAGATGAAAATCACTTTGATTGCTTTGATACAATAAT
CAATAAATACTgaagttttcttttattcatgatattcatgacgtaatgtt
ttcccGGTttgtagtggcaaattttatacaaattttgtctaatttaaatt
tgccactactggctaaaaccgaggtatttccgtagaaaacattacgtcat
gaatatcatgaatatgagAGTTCTCTTAAATCTTGATGTTTTAAACACCG
AGTTGTTCAAAAATGTGTCTATATAGTTCAAATCTCGATTTAGAGCGCTA
TTCAAGCGATAAATTTCAAACTTTGCATGACCAAAATTTAATCTAACTCC
AGGGAACTCTCAAAAACTGCAATGTCGAACAAAACAGCTAGTTAGTTGCA
GTTCTAATGATTGAAGATAGCATGAAAAGCGTTCTACGTCAAAGTTTATA
CTTCGTGGACACAATTTCAGCCGATAAACGTCCCTTCTAGAGAGGAGGCG
TTTATTTTGGGAGCCATCatataaaaaacttttcctttaatgaggggcgt
ttattcgacgGGACAATCTAAAAAAGTTaccgtttattcgaagtaatgtA
ATCGATTTTCGTCATTTTGGAACACTTATATTAGAAAGGGAAGTTTTTTG
TACTTGGTGCAAAAAGGTACCTTATCTCTCGCACTACCTCTTTCCTAATT
TGCCTAAGTTTCCTATCCCAGGGGTCGACACTGAGGCCATTTCGATTGAA
CTGATTACATCGAAAAAAGGTAACaaaattacacccctgtgtcagggaaa
aatagaatttctatctttATTGGAATTTCGCCGTGAGAagaagctccacc
ggggctgcgagacaggggtgtgaaattttgatcaaatgaTGAAAATCTTT
TAATAATGTGAGGGAgttttatactatttgtaagtttgtaaatattttaa
atatttttcttttaatatctTCTTATAAATACATTTACAATTTTTCCCGC
CGAAACTTttactaaaaaagagaaaaaatacaCTATAATAATGTGTACAA
TATTCTTGAATTTTACATTAAACAACACTAGAAATATAGATTATCGCCCA
GTCTCTTTTCTATCTTCCTAGCTTGTCTGTTGATGTATTTCCATGTGTTG
ACCTCATGAGCATTTTCGTCATCTTGGGGTTGATAACATCAGTCTGGTGA
ACTCTGTAGATAAAAAGTGGTAAATACATTATTACATTATAGCCACATTT
TGATGTCGTTGACATTGACTGTCTCGAGAAATGGGCATGCGCCCGCCAAA
GATTTTTCGAGAGATTTGAATAGTGAA
Run BLAST on NCBI

protein sequence of TCONS_00056647-protein

>TCONS_00056647-protein ID=TCONS_00056647-protein|Name=TCONS_00056647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MLQKSNEKPQIQFWRNSTRENCHFLRRIQSIYRRFKWKMSFKQMSTCRKN
TVCAFVWTSCTFCLLMHSSVDIHWSHVTTTPMYTTKSIQNMQTLNNGVKQ
RLYVGIWKYCDIELQTNKILGCFKTAELFGGVMSEKEIVIPEWLMLCWVF
MFCGLVINLMSVFNLLYSIYTNSRQRLWQFLIQGFVTFFSLGVVILYSFK
NSDYNNPQTADGGSDSNISFEQHQHFEVSERFALNFYLVLLAGCISMANL
IKLTLNLKK
Run BLAST on NCBI

transcript from alignment at scaffold_279:34346..37856+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=transcript|length=3511bp|location=Sequence derived from alignment at scaffold_279:34346..37856+ (Clytia hemisphaerica)
CATGGTCAgtaattgattttgaatttctttttttaaagcctTATCACATT CTATTATATCTTATTATGTGATTTCCTTTGCCTATTACGAATCGTGTCTT ACAACCTTTTGAGTTGTTATACTATAATTAAAGACATACTTTGACTGTAT GTGAGCTTTGTATCAAGACAAACtgatattttatttctttctgGTCTATG GTTTGACTTTAGAGTAACGATTTAGGTCTCTGTTCGCGTCATCGAGCaaa tatgttcaaaaaattTAGGTAAGTTATGaaagttaaaatcttcatccttt tttttttgcaattttgaacttgaaattgtttttatctAGGTAATCTAGGC TTTAAATCATATTTTTACCCTTTATTTTCCTGTATTAATCTGGCTATCTG ACTATCCCATACTCAAATTTGTTCTTAGATTATTCTTATTATCTGGTGTT ATTGAGCCTGGTTGTTGTTATGAAATTGTTCTAATAAAGCACATTGCAGT ATTTTTCTCTTACTTGCTATAATTTGTGTGAATTCGAAGATGTGAAGGCT TTAAACAaacccggcggaacaaccgttaaaGAGGGGGAGGCTGaaagctc aaaatgagataaaattcgctaggaatttgagaaaaaaatctcaatagCCT TGgttgaagtctccccagtctccccgttCCCACCGGGCCTGTTAAAAATC GTCAAAGATTGGTTGGTGATGCAATTTGAGCAAATGCAAAGTTCCAAAGT TTTAGTCTGTGTTATAGTCTACATATATCAACACACTTGTTCGTCCTAGT AGCGCATGACTTGACACAAAATGAAGCCACGGCTTCCGAAATCTTCATCA TCAACGAAAATGTATCCTTTGTTATATAACAGGCGCTAGGACATCAAATT ATCAAACAATATgatttaaaatattgataacCGGAGCTTATCATTTTATG CTAGAATTTTCTCCTTCGTCGTCACATCGCATCAagagaaatattcaata taagaaatcttttacatcgATATCTAAATTGAACAAAACCCCTCGACGCT TATCCAGTCAGAGAGAGCTGTCTACTTTCAGTTTCACTTTCTGGAGATTT GTGACAGTTTGGAGTAATAAAAAATTCTATCGATCATTCTCTCCAACATT CCATATACTATAATAATTGATatctatactttacttttttgtaaaacaAC ATATCTATAAGTATATGGTTGAAGTTTAATTTTCCATATATATTTTATAT AGAGAGAGGCAATAAAGATGTGGAAGTTGGCCGCAAACGATGTTACAAAA ATCGAATGAAAAACCTCAAATTCAATTTTGGAGGAATAGTACTAGAGAAA ATTGTCACTTTTTACGCCGTATTCAATCGATCTATAGAAGGTTTAAGTGG AAAATGTCTTTTAAACAAATGTCAACTTGTAGAAAGAACACAGTTTGTGC TTTTGTATGGACTTCATGTACTTTTTGCTTACTTATGCATTCGTCAGTGG ATATTCATTGGTCGCATGTAACAACAACACCAATGTACACCACAAAGTCT ATTCAAAACATGCAGACTTTGAATAATGGTGTTAAACAAAGGCTTTATGT TGGAATATGGAAATATTGCGATATAGAACTTCAAACTAATAAAATTTTAG GCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGTAATGTCGGAAAAAGAA ATCGTGATACCTGAATGGCTTATGCTTTGTTGGGTTTTTATGTTTTGTGG ACTCGTCATAAACTTGATGTCAGTATTCAATTTGCTTTATTCCATTTACA CCAACAGTCGACAAAGACTCTGGCAATTTCTAATACAAGGATTTGTGACA TTTTTCTCATTGGGAGTTGTTATACTATATAGTTTTAAAAATTCAGACTA TAACAACCCTCAAACGGCTGATGGTGGATCAGATTCGAACATTTCTTTTG AGCAACACCAACACTTTGAAGTATCTGAAAGATTTGCATTGAATTTTTAC TTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGAATTTGATCAAATTGAC ATTGaatctcaaaaaataaaatgactcttagagaaagttttgctgttttt tttttcgtagtAGCTCGAATAAACGCCCAGGGCGTCCAAAGTCACTTTGA TAGGGCGAGTGGGAATGTACAAATATATCCTTTTAGAGACGTAGAAGTAG ATGAAAATCACTTTGATTGCTTTGATACAATAATCAATAAATACTgaagt tttcttttattcatgatattcatgacgtaatgttttcccGGTttgtagtg gcaaattttatacaaattttgtctaatttaaatttgccactactggctaa aaccgaggtatttccgtagaaaacattacgtcatgaatatcatgaatatg agAGTTCTCTTAAATCTTGATGTTTTAAACACCGAGTTGTTCAAAAATGT GTCTATATAGTTCAAATCTCGATTTAGAGCGCTATTCAAGCGATAAATTT CAAACTTTGCATGACCAAAATTTAATCTAACTCCAGGGAACTCTCAAAAA CTGCAATGTCGAACAAAACAGCTAGTTAGTTGCAGTTCTAATGATTGAAG ATAGCATGAAAAGCGTTCTACGTCAAAGTTTATACTTCGTGGACACAATT TCAGCCGATAAACGTCCCTTCTAGAGAGGAGGCGTTTATTTTGGGAGCCA TCatataaaaaacttttcctttaatgaggggcgtttattcgacgGGACAA TCTAAAAAAGTTaccgtttattcgaagtaatgtAATCGATTTTCGTCATT TTGGAACACTTATATTAGAAAGGGAAGTTTTTTGTACTTGGTGCAAAAAG GTACCTTATCTCTCGCACTACCTCTTTCCTAATTTGCCTAAGTTTCCTAT CCCAGGGGTCGACACTGAGGCCATTTCGATTGAACTGATTACATCGAAAA AAGGTAACaaaattacacccctgtgtcagggaaaaatagaatttctatct ttATTGGAATTTCGCCGTGAGAagaagctccaccggggctgcgagacagg ggtgtgaaattttgatcaaatgaTGAAAATCTTTTAATAATGTGAGGGAg ttttatactatttgtaagtttgtaaatattttaaatatttttcttttaat atctTCTTATAAATACATTTACAATTTTTCCCGCCGAAACTTttactaaa aaagagaaaaaatacaCTATAATAATGTGTACAATATTCTTGAATTTTAC ATTAAACAACACTAGAAATATAGATTATCGCCCAGTCTCTTTTCTATCTT CCTAGCTTGTCTGTTGATGTATTTCCATGTGTTGACCTCATGAGCATTTT CGTCATCTTGGGGTTGATAACATCAGTCTGGTGAACTCTGTAGATAAAAA GTGGTAAATACATTATTACATTATAGCCACATTTTGATGTCGTTGACATT GACTGTCTCGAGAAATGGGCATGCGCCCGCCAAAGATTTTTCGAGAGATT TGAATAGTGAA

Coding sequence (CDS) from alignment at scaffold_279:34346..37856+

>TCONS_00056647 ID=TCONS_00056647|Name=TCONS_00056647|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_279:34346..37856+ (Clytia hemisphaerica)
ATGTTACAAAAATCGAATGAAAAACCTCAAATTCAATTTTGGAGGAATAG
TACTAGAGAAAATTGTCACTTTTTACGCCGTATTCAATCGATCTATAGAA
GGTTTAAGTGGAAAATGTCTTTTAAACAAATGTCAACTTGTAGAAAGAAC
ACAGTTTGTGCTTTTGTATGGACTTCATGTACTTTTTGCTTACTTATGCA
TTCGTCAGTGGATATTCATTGGTCGCATGTAACAACAACACCAATGTACA
CCACAAAGTCTATTCAAAACATGCAGACTTTGAATAATGGTGTTAAACAA
AGGCTTTATGTTGGAATATGGAAATATTGCGATATAGAACTTCAAACTAA
TAAAATTTTAGGCTGTTTTAAAACGGCTGAACTTTTTGGTGGTGTAATGT
CGGAAAAAGAAATCGTGATACCTGAATGGCTTATGCTTTGTTGGGTTTTT
ATGTTTTGTGGACTCGTCATAAACTTGATGTCAGTATTCAATTTGCTTTA
TTCCATTTACACCAACAGTCGACAAAGACTCTGGCAATTTCTAATACAAG
GATTTGTGACATTTTTCTCATTGGGAGTTGTTATACTATATAGTTTTAAA
AATTCAGACTATAACAACCCTCAAACGGCTGATGGTGGATCAGATTCGAA
CATTTCTTTTGAGCAACACCAACACTTTGAAGTATCTGAAAGATTTGCAT
TGAATTTTTACTTGGTTTTGTTGGCCGGTTGTATTAGTATGGCGAATTTG
ATCAAATTGACATTGaatctcaaaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035678XLOC_035678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056647-proteinTCONS_00056647-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056647-exon-scaffold_279-1491911889:34346..34613TCONS_00056647-exon-scaffold_279-1491911889:34346..34613Clytia hemisphaericaexon
TCONS_00056647-exon-scaffold_279-1510915933:34346..34613TCONS_00056647-exon-scaffold_279-1510915933:34346..34613Clytia hemisphaericaexon
TCONS_00056647-exon-scaffold_279-1575043694:34346..34613TCONS_00056647-exon-scaffold_279-1575043694:34346..34613Clytia hemisphaericaexon
TCONS_00056647-exon-scaffold_279-1491911889:35598..37856TCONS_00056647-exon-scaffold_279-1491911889:35598..37856Clytia hemisphaericaexon
TCONS_00056647-exon-scaffold_279-1510915933:35598..37856TCONS_00056647-exon-scaffold_279-1510915933:35598..37856Clytia hemisphaericaexon
TCONS_00056647-exon-scaffold_279-1575043694:35598..37856TCONS_00056647-exon-scaffold_279-1575043694:35598..37856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_279supercontigscaffold_279:34346..37856 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (11.2377 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 11.2377 7.23565 2.31121 3.07926 0 0.247696 0.854253 0.492001 1.87489 0.956407 0.124315 0 0.0787027 0.0593021 0.0871198 0.566881 0.144608 0.343377 0.051948 0.201282 0.233545 0.0493051 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200140016001800200022002400Sequence
Match NameE-valueIdentityDescription
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