TCONS_00056664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056664
Unique NameTCONS_00056664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056664 ID=TCONS_00056664|Name=TCONS_00056664|organism=Clytia hemisphaerica|type=transcript|length=1228bp
atttAGAGCTAAATTTTAGCTCATGTTAATTCCGCAATCAGCAAGTCAAA
CGCCCGGCATCATATGGCGGGCTAAAACTGCACGCTCACTCCTACTCGTC
CCAGTCCCACGGACTCCGACTTGTAGCGTTTAAGTTCAGTCATTCAGTTC
ACCTCATCCTCTCATGCATTCAAcacaaatatttttgctttcttggTTAA
TCAGAAATAAATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACT
GCATCTTCAATTATCAATTCTGCGTTATCTCTCCTATCGAACCCCACACA
CCAACACTCAAAAAAAGTANTCAATTATCAATTCTGCGTTTCTCCTATCG
AACCCCACACACCAACACTCAAAAAAGTATGTCCACCACCGTGACCCACC
GTTGTTCCAGTTACGACCTCATCCGACATCCTGTTGAGTCAGCATTATTA
CGATCCAAAATGGTATCTCTAACTGTGGTATTCCTTTTTCATCACAACGT
CTGGACCTGAACGACTGTAAAATTTATATCTAACTCCACCCAAGATTATC
CAGCAAATCCGCCTGGGTGAGtctgttgttttttattattttactgCCTG
CACACTTGGGGAAGGCCCATTCGTCGCCAGATTCGTTAATTTTCGATGGG
GACATCAACCAATTGCCATAAAGACACTGATCCCAGCATTCTCTCCCCAA
TTTCAACTTGGCCTTGAGAATTACATGTCCCCTCCCCTTGATGATGGGGT
GTCCTTTCTTCTGAACCTCTATTAGGTCTCCGCCACACTTAGCCAAAAAA
AATGTCTGATTATTACCAGAtagttttgattttctaatttgtATACATAG
CATGGGGGCAAGGCACAGTATAAGACAAGGCATGTCATTTAGGAGAACGT
ACATTTGGACTGGTTTTAGTTAAAGTATCCCTCTTGTAAGTTGGTCACCA
AACGTCACCAAATCCTCCCCTCTCTGACAATGGTGTGTCATACATCTCTT
TAATAAATCCAATCAAGCCTCCCCCATCATATTGAGCCAACGAAATGCCT
GATTATTATTAGATTATTTGTCCTTTCTCCTTCTTGTACACATCGCAAAG
GCGTACTTCGGGCTGGTTTTATTTAACATTCGTCCTTGTAATATGGTCCT
CAAATATCAACCCACTTAGCCGTATCTCCATTTAGCGGTTTTTGTTTATC
TTCCTGCCTTTGTCAACCTGCATTGCTC
Run BLAST on NCBI

transcript from alignment at scaffold_280:8769..10030+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056664 ID=TCONS_00056664|Name=TCONS_00056664|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at scaffold_280:8769..10030+ (Clytia hemisphaerica)
atttAGAGCTAAATTTTAGCTCATGTTAATTCCGCAATCAGCAAGTCAAA
CGCCCGGCATCATATGGCGGGCTAAAACTGCACGCTCACTCCTACTCGTC
CCAGTCCCACGGACTCCGACTTGTAGCGTTTAAGTTCAGTCATTCAGTTC
ACCTCATCCTCTCATGCATTCAAcacaaatatttttgctttcttggTTAA
TCAGAAATAAATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACT
GCATCTTCAATTATCAATTCTGCGTTATCTCTCCTATCGAACCCCACACA
CCAACACTCAAAAAAAGTANTCAATTATCAATTCTGCGTTTCTCCTATCG
AACCCCACACACCAACACTCAAAAAAGTATGTCCACCACCGTGACCCACC
GTTGTTCCAGTTACGACCTCATCCGACATCCTGTTGAGTCAGCATTATTA
CGATCCAAAATGGTATCTCTAACTGTGGTATTCCTTTTTCATCACAACGT
CTGGACCTGAACGACTGTAAAATTTATATCTAACTCCACCCAAGATTATC
CAGCAAATCCGCCTGGGTGAGtctgttgttttttattattttactgCCTG
CACACTTGGGGAAGGCCCATTCGTCGCCAGATTCGTTAATTTTCGATGGG
GACATCAACCAATTGCCATAAAGACACTGATCCCAGCATTCTCTCCCCAA
TTTCAACTTGGCCTTGAGAATTACATGTCCCCTCCCCTTGATGATGGGGT
GTCCTTTCTTCTGAACCTCTATTAGGTCTCCGCCACACTTAGCCAAAAAA
AATGTCTGATTATTACCAGAtagttttgattttctaatttgtATACATAG
CATGGGGGCAAGGCACAGTATAAGACAAGGCATGTCATTTAGGAGAACGT
ACATTTGGACTGGTTTTAGTTAAAGTATCCCTCTTGTAAGTTGGTCACCA
AACGTCACCAAATCCTCCCCTCTCTGACAATGGTGTGTCATACATCTCTT
TAATAAATCCAATCAAGCCTCCCCCATCATATTGAGCCAACGAAATGCCT
GATTATTATTAGATTATTTGTCCTTTCTCCTTCTTGTACACATCGCAAAG
CACAGTATAACACTAGGCGTGTCATTCTAAGAGGGCGTACTTCGGGCTGG
TTTTATTTAACATTCGTCCTTGTAATATGGTCCTCAAATATCAACCCACT
TAGCCGTATCTCCATTTAGCGGTTTTTGTTTATCTTCCTGCCTTTGTCAA
CCTGCATTGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035688XLOC_035688Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056664-exon-scaffold_280-1491911889:8769..9867TCONS_00056664-exon-scaffold_280-1491911889:8769..9867Clytia hemisphaericaexon
TCONS_00056664-exon-scaffold_280-1510915933:8769..9867TCONS_00056664-exon-scaffold_280-1510915933:8769..9867Clytia hemisphaericaexon
TCONS_00056664-exon-scaffold_280-1575043694:8769..9867TCONS_00056664-exon-scaffold_280-1575043694:8769..9867Clytia hemisphaericaexon
TCONS_00056664-exon-scaffold_280-1491911889:9902..10030TCONS_00056664-exon-scaffold_280-1491911889:9902..10030Clytia hemisphaericaexon
TCONS_00056664-exon-scaffold_280-1510915933:9902..10030TCONS_00056664-exon-scaffold_280-1510915933:9902..10030Clytia hemisphaericaexon
TCONS_00056664-exon-scaffold_280-1575043694:9902..10030TCONS_00056664-exon-scaffold_280-1575043694:9902..10030Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_280supercontigscaffold_280:8769..10030 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.758202	0.628138	0.195154	0.274641	0.5723	0.103067	0.658211	1.01072	1.00007	1.21888	1.05293	0.989541	0.709885	0.717903	1.14226	1.27898	1.15665	0.716299	0.219899	0.371197	0.40139	1.86081	0.209491	0.240437	0.487491	1.0077	0.117665	0.395864	0.166113	0.100735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top