TCONS_00056665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056665
Unique NameTCONS_00056665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056665 ID=TCONS_00056665|Name=TCONS_00056665|organism=Clytia hemisphaerica|type=transcript|length=554bp
CACTTGCAGCGAAAAATGTGTTCACGGTTGGTGTATTGGACTTGATAAAT
GCATGTGTGAAGAAAGCTATACTGGAGACTTGTGTGAAACTAAAAAACCA
TATTGCAATCCAGCCTGTGAAAACGGAGGTAGCTGCGCTTCAAACAATTA
TTGTGAGTGTTTAAAGGGATATGGTGGATCGACCTGTGGTGTTAAaacaa
cgacaacaacaacGAAAACGACACCATCAACGCCGGCAACGACAACAACA
TTAACGTCGGTAAAATCAACGTTGGTGAAGCCTGGTAATGGAAGTCAGGA
AGATAATAGTGATGAATGGCCTTTGAATAATCTCTCAATTACTTTTATTG
TCGGTTTCGGATTTATGTTGGTGATCGCTGTCATCGCTTTGAGGTGTATT
TTTATTATCAAACGAAAGGCCACCGCAGTAAAAAAAGACCATCCCCCTCC
TTATGAAGCAGCGAACACCAACCATGCGCACGAGATGGAAACTATTCAAC
AACCAAGATTATATCCTACATTACCAACTTACAATCAAgctcattaattt
ttgc
Run BLAST on NCBI

protein sequence of TCONS_00056665-protein

>TCONS_00056665-protein ID=TCONS_00056665-protein|Name=TCONS_00056665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
TCSEKCVHGWCIGLDKCMCEESYTGDLCETKKPYCNPACENGGSCASNNY
CECLKGYGGSTCGVKTTTTTTKTTPSTPATTTTLTSVKSTLVKPGNGSQE
DNSDEWPLNNLSITFIVGFGFMLVIAVIALRCIFIIKRKATAVKKDHPPP
YEAANTNHAHEMETIQQPRLYPTLPTYNQAH
Run BLAST on NCBI

transcript from alignment at scaffold_280:55236..57368+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056665 ID=TCONS_00056665|Name=TCONS_00056665|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at scaffold_280:55236..57368+ (Clytia hemisphaerica)
CACTTGCAGCGAAAAATGTGTTCACGGTTGGTGTATTGGACTTGATAAAT
GCATGTGTGAAGAAAGCTATACTGGAGACTTGTGTGAAACTAAAAGTAAG
ATCCAAGAATAATCTTTTTAATTCAATGATTAATGTTTAGGGTCCGAACT
GACAAGGATTGGTTCTTTTCGTTTTCAGGACCGTCACCTGGGACGATTCA
TTCTATTCATTTTTCATGCTAGGCCCCCGgggggtacacgtttttttttt
tataagaacgtcaaaaattttcgaagccttcggatgttcttagttttttg
gatttgaagcctaaaaatgttcttaaaatgttcNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNccaaagccttagaatgttcttaaaatgttcttattttcagcat
tttttgagcattttgatgtaatttcttaagaaaatgcatgtttttgagtc
tccaaagccttagaatgttcttaaaatgttcttagatttttgggcctcga
agccttatgttcttatatagtttgttcttataaaaaaaaaaacgtgtact
agggttggcgaatgaggggtatgtgcggacgagacctccgaaaaccgacc
cttagggagactgatttttgctgaaaaggtgacctttagagagatttttt
gatttttttttttcgatttttgaaaaaagtcatacccttagaaagacttt
attacaattttttctctggaaatcaaaaaatttcctaaaaatcctaaatt
ttccgacccttagaaagactaatttaaaactttctgatttttccgaccct
tagagagactttgaaagatgaaaaaaccgacccttaccgttcgcacatac
ccatcatccaattttgcctaagtacccccccctccCGGGGGCTAGGCCAG
TTCATTCAAACTCTAGATACCGAGTGCGCAACAAAAGGTTTCTCTCTCTT
TAAAAGTAAATTTCTCGAAATccaaaaatcgacctatcaaatagAAAGAG
GAATGATTATAAACGACATCTAATCACTAATCACTTACTTATAGAACCAT
ATTGCAATCCAGCCTGTGAAAACGGAGGTAGCTGCGCTTCAAACAATTAT
TGTGAGTGTTTAAAGGGATATGGTGGATCGACCTGTGGTGTTAAaacaac
gacaacaacaacGAAAACGACACCATCAACGCCGGCAACGACAACAACAT
TAACGTCGGTAAAATCAACGTTGGTGAAGCCTGGTAATGGAAGTCAGGAA
GATAATAGTGATGAATGGCCTTTGAATAATCTCTCAATTAGTAtgcattt
ttattttctttgcacTTGCTTTAAGTAAGAGACCGCTGTGCAAGTGGTAG
AGCATTCATTTACGATGTGAAAGGTTGTGGGTTCCACCCTCaaccgggtc
ataccaaagatttccaaaatggtgcTTGCTGCCTCtctacttgatgctca
gcaCTTAAGAGGgttgccacttcagagaaggatcaagggtaggTGGAGCA
ATAAATACAGGGAGAAAGAGGCGCCCTCCCCtatcttcgggtagatagct
atcgaaagaggagccttcgggtcgcctacgactgcggtcgcagacctact
acttacttacttacttacttaagcAAGAGATGAGGGTATATGTTGTCTGA
TCATACAAAATGAAAAGTCTCATTTTTACCCAAACTTACCACAACCCCTG
GACCCTAACTCAACTAagcttctttttttgttttagagttaacctgccat
ttttctttactttctttAAGCTTTTATTGTCGGTTTCGGATTTATGTTGG
TGATCGCTGTCATCGCTTTGAGGTGTATTTTTATTATCAAACGAAAGGCC
ACCGCAGTAAAAAAAGACCATCCCCCTCCTTATGAAGCAGCGAACACCAA
CCATGCGCACGAGATGGAAACTATTCAACAACCAAGATTATATCCTACAT
TACCAACTTACAATCAAgctcattaatttttgc

Coding sequence (CDS) from alignment at scaffold_280:55236..57368+

>TCONS_00056665 ID=TCONS_00056665|Name=TCONS_00056665|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_280:55236..57368+ (Clytia hemisphaerica)
ACTTGCAGCGAAAAATGTGTTCACGGTTGGTGTATTGGACTTGATAAATG
CATGTGTGAAGAAAGCTATACTGGAGACTTGTGTGAAACTAAAAAACCAT
ATTGCAATCCAGCCTGTGAAAACGGAGGTAGCTGCGCTTCAAACAATTAT
TGTGAGTGTTTAAAGGGATATGGTGGATCGACCTGTGGTGTTAAaacaac
gacaacaacaacGAAAACGACACCATCAACGCCGGCAACGACAACAACAT
TAACGTCGGTAAAATCAACGTTGGTGAAGCCTGGTAATGGAAGTCAGGAA
GATAATAGTGATGAATGGCCTTTGAATAATCTCTCAATTACTTTTATTGT
CGGTTTCGGATTTATGTTGGTGATCGCTGTCATCGCTTTGAGGTGTATTT
TTATTATCAAACGAAAGGCCACCGCAGTAAAAAAAGACCATCCCCCTCCT
TATGAAGCAGCGAACACCAACCATGCGCACGAGATGGAAACTATTCAACA
ACCAAGATTATATCCTACATTACCAACTTACAATCAAgctcattaaACTT
GCAGCGAAAAATGTGTTCACGGTTGGTGTATTGGACTTGATAAATGCATG
TGTGAAGAAAGCTATACTGGAGACTTGTGTGAAACTAAAAAACCATATTG
CAATCCAGCCTGTGAAAACGGAGGTAGCTGCGCTTCAAACAATTATTGTG
AGTGTTTAAAGGGATATGGTGGATCGACCTGTGGTGTTAAaacaacgaca
acaacaacGAAAACGACACCATCAACGCCGGCAACGACAACAACATTAAC
GTCGGTAAAATCAACGTTGGTGAAGCCTGGTAATGGAAGTCAGGAAGATA
ATAGTGATGAATGGCCTTTGAATAATCTCTCAATTACTTTTATTGTCGGT
TTCGGATTTATGTTGGTGATCGCTGTCATCGCTTTGAGGTGTATTTTTAT
TATCAAACGAAAGGCCACCGCAGTAAAAAAAGACCATCCCCCTCCTTATG
AAGCAGCGAACACCAACCATGCGCACGAGATGGAAACTATTCAACAACCA
AGATTATATCCTACATTACCAACTTACAATCAAgctcattaaACTTGCAG
CGAAAAATGTGTTCACGGTTGGTGTATTGGACTTGATAAATGCATGTGTG
AAGAAAGCTATACTGGAGACTTGTGTGAAACTAAAAAACCATATTGCAAT
CCAGCCTGTGAAAACGGAGGTAGCTGCGCTTCAAACAATTATTGTGAGTG
TTTAAAGGGATATGGTGGATCGACCTGTGGTGTTAAaacaacgacaacaa
caacGAAAACGACACCATCAACGCCGGCAACGACAACAACATTAACGTCG
GTAAAATCAACGTTGGTGAAGCCTGGTAATGGAAGTCAGGAAGATAATAG
TGATGAATGGCCTTTGAATAATCTCTCAATTACTTTTATTGTCGGTTTCG
GATTTATGTTGGTGATCGCTGTCATCGCTTTGAGGTGTATTTTTATTATC
AAACGAAAGGCCACCGCAGTAAAAAAAGACCATCCCCCTCCTTATGAAGC
AGCGAACACCAACCATGCGCACGAGATGGAAACTATTCAACAACCAAGAT
TATATCCTACATTACCAACTTACAATCAAgctcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035689XLOC_035689Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056665-proteinTCONS_00056665-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056665-exon-scaffold_280-1491911889:55236..55330TCONS_00056665-exon-scaffold_280-1491911889:55236..55330Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1510915933:55236..55330TCONS_00056665-exon-scaffold_280-1510915933:55236..55330Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1575043694:55236..55330TCONS_00056665-exon-scaffold_280-1575043694:55236..55330Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1491911889:56430..56675TCONS_00056665-exon-scaffold_280-1491911889:56430..56675Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1510915933:56430..56675TCONS_00056665-exon-scaffold_280-1510915933:56430..56675Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1575043694:56430..56675TCONS_00056665-exon-scaffold_280-1575043694:56430..56675Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1491911889:57156..57368TCONS_00056665-exon-scaffold_280-1491911889:57156..57368Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1510915933:57156..57368TCONS_00056665-exon-scaffold_280-1510915933:57156..57368Clytia hemisphaericaexon
TCONS_00056665-exon-scaffold_280-1575043694:57156..57368TCONS_00056665-exon-scaffold_280-1575043694:57156..57368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_280supercontigscaffold_280:55236..57368 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.615525	0.355127	0	0	0	0	2.40493	2.40219	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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