TCONS_00056673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056673
Unique NameTCONS_00056673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056673 ID=TCONS_00056673|Name=TCONS_00056673|organism=Clytia hemisphaerica|type=transcript|length=1163bp
CAAAATCTATACTACAATTATGCATTTGACGGAAATGGAATTTATTAGGG
CTGTCGTGCTCAATTCCAAGCGAACAGAACCTTTGGTGGACTCGCTTTTG
ACGTTACAACACGTTAAAAAAAGCCAATTTCCCGGATTTAGAAGCCAAAT
TGGTCTCTTGTTGGATAAACTTGGAATATATTTAAAGCGACCAgCTGTAA
ATGAAAGTTCCAAATCAACAGAAAATTCAACAGAAGATTTGACCCTCAGA
GAAATTGATAGAACGAGAATGAAACAAAAAGAACTGCTGGATCGCCTGCA
TCCCTATTCAATGAAGAGGCAAAAAGCAGTTTTTCAATGGAAACAGAAGA
ATTTACTTAGAATGGACGACTTCATTAAGATTGGAAGTTCCGATTTTGCT
TTGAACGTAGCTTGTGTTCTAGAAGAGCCAGAGAAATTTCCAGAATTTAA
TAACCTCAAAGTTACTGATTTGCGAAATATGTACGTTTTTCATTGTCATG
GGGAACGCAGCATGCTCGTCTAATATCGTCGAAATGACACTTCAACACAT
AAACGACGCAGTGGAAAGCAATAAGTACATCTCAAATGACTCGGCAATGG
TTGTTGTCAGTGATATATATAAGACTTCTATCATCTATGGGGAAAAGCTC
ATGGTAATACCGAAAGATATCTTCCGGTAACTGAAGACGTACATCGAGGT
CTTTCGACCGATGCTCATATCAGACGAAGATTTAGACGACTCTAAAAGAT
ATCTTTTCACTTCATCACGTGCCGCAGACACAACTAAAAACAAGAAacat
aaagaaaagaaagaaaagaaaagggaTGATGGGAAAATGACCACATCAAA
CGTGGCTGGAGCTTGTTCGAGAGTTTATCAGTTGAGTGGAATGACAGGGG
AATTAAAACGTTGCTCCTCAACACGTATACGCCATGCTGTTGCCACCGAA
CTGGCAGGATACGATGGCGAAAAGTGTGAAATTGTGGCAAAACTCTTTAT
GAAGAATAGGGAATCCACAACCCAGAAATTCTACGTTCTTCATTTTGAGC
AGCGTGAGGCAGTGCGCCTATCAATGAAGATGTTCTCGAAAATGCGAGGA
AAAGCCTTCAATCCCTCAAATGTACCGCGCCCTAACGAAGTCTCGAAAAA
TGACGAACTCGTC
Run BLAST on NCBI

protein sequence of TCONS_00056673-protein

>TCONS_00056673-protein ID=TCONS_00056673-protein|Name=TCONS_00056673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
KIYTTIMHLTEMEFIRAVVLNSKRTEPLVDSLLTLQHVKKSQFPGFRSQI
GLLLDKLGIYLKRPAVNESSKSTENSTEDLTLREIDRTRMKQKELLDRLH
PYSMKRQKAVFQWKQKNLLRMDDFIKIGSSDFALNVACVLEEPEKFPEFN
NLKVTDLRNMYVFHCHGERSMLV
Run BLAST on NCBI

transcript from alignment at scaffold_281:46426..48381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056673 ID=TCONS_00056673|Name=TCONS_00056673|organism=Clytia hemisphaerica|type=transcript|length=1956bp|location=Sequence derived from alignment at scaffold_281:46426..48381+ (Clytia hemisphaerica)
CAAAATCTATACTACAATTATGCATTTGACGGAAATGGAATTTATTAGGG
CTGTCGTGCTCAATTCCAAGCGAACAGAACCTTTGGTGGACTCGCTTTTG
ACGTTACAACACGTTAAAAAAAGCCAATTTCCCGGATTTAGAAGCCAAAT
TGGTCTCTTGTTGGATAAACTTGGAATATATTTAAAGCGACCAggtactt
tttcaatttttcaatgaaaccaATGACAATCTCTATCTTGAATATATTAT
CAGGTTCTTCTAATCTTTTTACCGTTAACGAGTAGTGACTCTTGTCATCT
GATCTGGCATATAAAACTATATCCTTAtatttgtttttgataattttttt
tcctttttatattGGCAGCTGTAAATGAAAGTTCCAAATCAACAGAAAAT
TCAACAGAAGGTACAGATAATTAGGGGAATTTCAAGGGGAGCGTATTCAA
AAATGGGCACTCTCTAAATCGACACTTATTTGAGGAAATACGTTCTAACC
CTGTAATTACGAAAAAGGAATAGATTCTctacattttcttattttgtgtG
CAGATTTGACCCTCAGAGAAATTGATAGAACGAGAATGAAACAAAAAGAA
CTGCTGGATCGCCTGCATCCCTATTCAATGAAGAGGCAAAAAGCAGTTTG
TAAGTGAACTCTCCTCCTTTATCAGAATAATCTTTTGTCATGTTATATAT
GTTATAATGTTAAAAATGTCGTTGTAAAATGATTCAAATTCCAGTCACAT
TGTTAGGGAATAGAGATGAAATGAACCATTCATGGGAAAACCTCAAATAG
CAACCAacgtttttttaatttctactTTAGTTCAATGGAAACAGAAGAAT
TTACTTAGAATGGACGACTTCATTAAGATTGGAAGTTCCGATTTTGCTTT
GAACGTAGCTTGTGTTCTAGAAGAGCCAGAGAAATTTCCAGAATTTAATA
ACCTCAAAGTTACTGATTTGCGAAATATGTACGTTTTTCATTGTCATGGG
GAACGCAGCATGCTCGTCTAATATCGTCGAAATGACACTTCAACACATAA
ACGACGCAGTGGAAAGCAATAAGTACATCTCAAATGACTCGGCAATGGTT
GTTGTCAGTGATATATATAAGACTTCTATCATCTATGGGGAAAAGCTCAT
GGTAATACCGAAAGATATCTTCCGGTAACTGAAGACGTACATCGAGGTCT
TTCGACCGATGCTCATATCAGACGAAGATTTAGACGACTCTAAAAGATAT
CTTTTCACTTCATCACGTGCCGCAGACACAACTAAAAACAAGAAacataa
agaaaagaaagaaaagaaaagggaTGATGGGAAAATGACCACATCAAACG
TGGCTGGAGCTTGTTCGAGAGTTTATCAGTTGAGTGGAATGACAGGGGAA
TTAAAGTATGTTTATATAATATATCAATAAGTCTTGCATTGTTGCATCTC
AAAGTAGAGACAATTTAACCATATGGCTATTACAAATTAGATTTCCTTGT
CGTACTACCCTCTCATTTGTATACAGCATTTTTCAAGCGTATTTAAAATT
TTCGGTTACTCTTCtatgcttaattgtaggggaggtaattttttcaattt
tcgattttttgaacacCAAAGTTACTTAATAATACCCCCTTGCTAATATT
AAGCTAAAAAGTAACtgcaaaatattgatattttgttttattaaaTTTAG
ACGTTGCTCCTCAACACGTATACGCCATGCTGTTGCCACCGAACTGGCAG
GATACGATGGCGAAAAGTGTGAAATTGTGGCAAAACTCTTTATGAAGAAT
AGGGAATCCACAACCCAGAAATTCTACGTTCTTCATTTTGAGCAGCGTGA
GGCAGTGCGCCTATCAATGAAGATGTTCTCGAAAATGCGAGGAAAAGCCT
TCAATCCCTCAAATGTACCGCGCCCTAACGAAGTCTCGAAAAATGACGAA
CTCGTC

Coding sequence (CDS) from alignment at scaffold_281:46426..48381+

>TCONS_00056673 ID=TCONS_00056673|Name=TCONS_00056673|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_281:46426..48381+ (Clytia hemisphaerica)
AAAATCTATACTACAATTATGCATTTGACGGAAATGGAATTTATTAGGGC
TGTCGTGCTCAATTCCAAGCGAACAGAACCTTTGGTGGACTCGCTTTTGA
CGTTACAACACGTTAAAAAAAGCCAATTTCCCGGATTTAGAAGCCAAATT
GGTCTCTTGTTGGATAAACTTGGAATATATTTAAAGCGACCAgCTGTAAA
TGAAAGTTCCAAATCAACAGAAAATTCAACAGAAGATTTGACCCTCAGAG
AAATTGATAGAACGAGAATGAAACAAAAAGAACTGCTGGATCGCCTGCAT
CCCTATTCAATGAAGAGGCAAAAAGCAGTTTTTCAATGGAAACAGAAGAA
TTTACTTAGAATGGACGACTTCATTAAGATTGGAAGTTCCGATTTTGCTT
TGAACGTAGCTTGTGTTCTAGAAGAGCCAGAGAAATTTCCAGAATTTAAT
AACCTCAAAGTTACTGATTTGCGAAATATGTACGTTTTTCATTGTCATGG
GGAACGCAGCATGCTCGTCTAAAAAATCTATACTACAATTATGCATTTGA
CGGAAATGGAATTTATTAGGGCTGTCGTGCTCAATTCCAAGCGAACAGAA
CCTTTGGTGGACTCGCTTTTGACGTTACAACACGTTAAAAAAAGCCAATT
TCCCGGATTTAGAAGCCAAATTGGTCTCTTGTTGGATAAACTTGGAATAT
ATTTAAAGCGACCAgCTGTAAATGAAAGTTCCAAATCAACAGAAAATTCA
ACAGAAGATTTGACCCTCAGAGAAATTGATAGAACGAGAATGAAACAAAA
AGAACTGCTGGATCGCCTGCATCCCTATTCAATGAAGAGGCAAAAAGCAG
TTTTTCAATGGAAACAGAAGAATTTACTTAGAATGGACGACTTCATTAAG
ATTGGAAGTTCCGATTTTGCTTTGAACGTAGCTTGTGTTCTAGAAGAGCC
AGAGAAATTTCCAGAATTTAATAACCTCAAAGTTACTGATTTGCGAAATA
TGTACGTTTTTCATTGTCATGGGGAACGCAGCATGCTCGTCTAAAAAATC
TATACTACAATTATGCATTTGACGGAAATGGAATTTATTAGGGCTGTCGT
GCTCAATTCCAAGCGAACAGAACCTTTGGTGGACTCGCTTTTGACGTTAC
AACACGTTAAAAAAAGCCAATTTCCCGGATTTAGAAGCCAAATTGGTCTC
TTGTTGGATAAACTTGGAATATATTTAAAGCGACCAgCTGTAAATGAAAG
TTCCAAATCAACAGAAAATTCAACAGAAGATTTGACCCTCAGAGAAATTG
ATAGAACGAGAATGAAACAAAAAGAACTGCTGGATCGCCTGCATCCCTAT
TCAATGAAGAGGCAAAAAGCAGTTTTTCAATGGAAACAGAAGAATTTACT
TAGAATGGACGACTTCATTAAGATTGGAAGTTCCGATTTTGCTTTGAACG
TAGCTTGTGTTCTAGAAGAGCCAGAGAAATTTCCAGAATTTAATAACCTC
AAAGTTACTGATTTGCGAAATATGTACGTTTTTCATTGTCATGGGGAACG
CAGCATGCTCGTCTAAAAAATCTATACTACAATTATGCATTTGACGGAAA
TGGAATTTATTAGGGCTGTCGTGCTCAATTCCAAGCGAACAGAACCTTTG
GTGGACTCGCTTTTGACGTTACAACACGTTAAAAAAAGCCAATTTCCCGG
ATTTAGAAGCCAAATTGGTCTCTTGTTGGATAAACTTGGAATATATTTAA
AGCGACCAgCTGTAAATGAAAGTTCCAAATCAACAGAAAATTCAACAGAA
GATTTGACCCTCAGAGAAATTGATAGAACGAGAATGAAACAAAAAGAACT
GCTGGATCGCCTGCATCCCTATTCAATGAAGAGGCAAAAAGCAGTTTTTC
AATGGAAACAGAAGAATTTACTTAGAATGGACGACTTCATTAAGATTGGA
AGTTCCGATTTTGCTTTGAACGTAGCTTGTGTTCTAGAAGAGCCAGAGAA
ATTTCCAGAATTTAATAACCTCAAAGTTACTGATTTGCGAAATATGTACG
TTTTTCATTGTCATGGGGAACGCAGCATGCTCGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035696XLOC_035696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056673-exon-scaffold_281-1491911889:46426..46619TCONS_00056673-exon-scaffold_281-1491911889:46426..46619Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1510915933:46426..46619TCONS_00056673-exon-scaffold_281-1510915933:46426..46619Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1575043694:46426..46619TCONS_00056673-exon-scaffold_281-1575043694:46426..46619Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1491911889:46794..46835TCONS_00056673-exon-scaffold_281-1491911889:46794..46835Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1510915933:46794..46835TCONS_00056673-exon-scaffold_281-1510915933:46794..46835Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1575043694:46794..46835TCONS_00056673-exon-scaffold_281-1575043694:46794..46835Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1491911889:46979..47074TCONS_00056673-exon-scaffold_281-1491911889:46979..47074Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1510915933:46979..47074TCONS_00056673-exon-scaffold_281-1510915933:46979..47074Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1575043694:46979..47074TCONS_00056673-exon-scaffold_281-1575043694:46979..47074Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1491911889:47256..47830TCONS_00056673-exon-scaffold_281-1491911889:47256..47830Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1510915933:47256..47830TCONS_00056673-exon-scaffold_281-1510915933:47256..47830Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1575043694:47256..47830TCONS_00056673-exon-scaffold_281-1575043694:47256..47830Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1491911889:48126..48381TCONS_00056673-exon-scaffold_281-1491911889:48126..48381Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1510915933:48126..48381TCONS_00056673-exon-scaffold_281-1510915933:48126..48381Clytia hemisphaericaexon
TCONS_00056673-exon-scaffold_281-1575043694:48126..48381TCONS_00056673-exon-scaffold_281-1575043694:48126..48381Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056673-proteinTCONS_00056673-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:46426..48381 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0743768	0.0725291	0	0	0.150452	0.396297	0.334681	0.268564	0.344718	0.116451	0.150707	0.54488	0.17313	0.565077	1.14031	1.94889	0.89335	1.17318	0.869706	0.910085	0.683161	0.78921	0.255837	0.542717	0.31942	0.249441	0.356949	0.380945	0.536591	0.336432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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