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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056677 ID=TCONS_00056677|Name=TCONS_00056677|organism=Clytia hemisphaerica|type=transcript|length=292bp
TATGAGATATATCTGTCCTGCCGTAAACCGACAAATTCGGGAAATCGAAC
AAGAATCTTCCTGCAGTTTTCTATTTGACTGAAATGGGAGCCGCCATTTT
ATTTCTTCGAGCTGtttcaagaatatttcaagagcattgTCCTCAAACAT
CACTTCAACCATCAAGTTTTACATCAAATCTAAGGGGTATCAGGCTTTTT
TCACTGATGGCTGCCCCTGGTACAAGCTAGGAAGAGATGACCGACTGATT
CTATAATTGAAGTTGAGTTGCCTTTCTTCAAACGGTAATTGG Run BLAST on NCBI transcript from alignment at scaffold_281:172671..174788+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056677 ID=TCONS_00056677|Name=TCONS_00056677|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at scaffold_281:172671..174788+ (Clytia hemisphaerica)
TATGAGATATATCTGTCCTGCCGTAAACCGACAAATTCGGGAAATCGAAC
AAGAATCTTCCTGCAGTTTTCTATTTGACTGAAATGGGAGCCGCCATTTT
ATTTCTTCGAGCTGtttcaagaatatttcaagagcattgTCCTCAAACAT
CACTTCAACCATCAAGTTTTACATCAAATCTAAGGGGTATCAGGTAGGGA
gtcattatttatgatttagaacttaaattgaaaataaatttgatattttt
agctGTAAAACGACTAATCAAAGTTGGTGCTCGATGTTGTTGTGTTGTAG
CCTCAGTTGAATTTCTCTTGGAGcttattcaaatcttttttcttttccat
cAGACGAAATATAAACCTAGCGGGAATGTCCATGTTGTACAATAaagtca
ctttttttttttggaaacaaCACCCAACAAGTGCACAAACAGTTCACCAG
CTTATGTGCTTTCAGACAAGATGAAATGACTGAAACCATTTTTATACTAG
ACTGGTTTGGTAACAAGATTCCCTTATCATTTTCCTTATTTATCCCTcac
ttttctcaaaaaaatgtaTCATCATAGAATAGAGATGTTTgcctatgttt
ccaattttaaaataagcTTTCATAGTAGACAATTTGATTCCTTGTATTCT
ATATCCACAATAATTAATTATTAACaagtaccgtgagatcgggtaacttg
catcagtggaggctaacatgcgtAGCCCTGAAATGATTGaactggctggt
cattaaaatacaaagttaaatcaaaacaaaaaaggtagagtagagctacg
accagacggtgtcaatcgaatgaatcgaacgccgaatcaatcgaacgaaa
ttgaacgcaattgaataattgcaattcgattgatgaacgcaatcgaatat
tacccaggatttgctgttcgattacgttcggttgtattcaattacgttcg
attgattcaattgtattagattttatttgctttagtAGGGTACTTAAGCG
CTTGGCCACCCATGCtaagaagctctaacagagtgatccaatttaattta
atcgcaatcaaactcatcgaacataatcataatcaaacgaaatcgaacat
aatcataatcaaacgaaatcgaagattaatccaatgtaattgccAATCac
tcgaaccaatcgaacatagtcaacaatcaatcgaacacaatcgaatatta
cccaggaattggatgttcgattgagattcgattacgttcgacaatcgaac
cgcaattattcgatcgcattcgattacgttcgattggttagattgcgatt
tttgttcgaagttgttcgattgacaccgtctggctacgagcagagctgcg
tagttcatttgttttgaaattttgctactttgattggtcagtcatttaat
ggctatgcaagtttccctccactgatgcaagttaccggACTTCACAGTAC
ATTCTAAGGCGCTGTCAACCAACCAATTAATTGGAAGCgaggcaaaaaaa
ttgtttttgttttttgaaaatgaaacactAAATTGAAGACAATAGGTATA
ATCCAAGGTTTATGTAATCAAATTGatcaagaaaaaatgaagtacCTTCT
ATTAGATTATATGATTGAATTTTAATCTTGCGATTGACTTCAATTAATTT
GATAATCGAATTATTTGGTTGACATCGCCTTTTGACATCAATTACAATCA
ATAATCGATATAGATATAATAATTAAGGTCCAAAACATTGTGACCTAGTC
TAAAACACAGTGACTATCGGTTATCAATCGATATAGATCGATTTAATGTA
ATCAATTAATAAACGATATCAGACGATATATAATCAATCATATTGATAGG
TATATACAATCGCTAATATCGATTTGATCGACAAGTTTGATAAACTTAGA
AAAATTAACTATAGatgaaatgataaaataattaatGTCCAATTGTATTG
GGTTGTAATTGTGTATTGGTTGTTATTTTCAGTTTcgacaaattttaatt
ttttttgtgtttctttGAGGCTTTTTTCACTGATGGCTGCCCCTGGTACA
AGCTAGGAAGAGATGACCGACTGATTCTATAATTGAAGTTGAGTTGCCTT
TCTTCAAACGGTAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056677-exon-scaffold_281-1491911889:172671..172863 | TCONS_00056677-exon-scaffold_281-1491911889:172671..172863 | Clytia hemisphaerica | exon |
| TCONS_00056677-exon-scaffold_281-1510915933:172671..172863 | TCONS_00056677-exon-scaffold_281-1510915933:172671..172863 | Clytia hemisphaerica | exon |
| TCONS_00056677-exon-scaffold_281-1575043694:172671..172863 | TCONS_00056677-exon-scaffold_281-1575043694:172671..172863 | Clytia hemisphaerica | exon |
| TCONS_00056677-exon-scaffold_281-1491911889:174690..174788 | TCONS_00056677-exon-scaffold_281-1491911889:174690..174788 | Clytia hemisphaerica | exon |
| TCONS_00056677-exon-scaffold_281-1510915933:174690..174788 | TCONS_00056677-exon-scaffold_281-1510915933:174690..174788 | Clytia hemisphaerica | exon |
| TCONS_00056677-exon-scaffold_281-1575043694:174690..174788 | TCONS_00056677-exon-scaffold_281-1575043694:174690..174788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:172671..174788 + |
Blast
The following BLAST results are available for this feature:
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