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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056680 ID=TCONS_00056680|Name=TCONS_00056680|organism=Clytia hemisphaerica|type=transcript|length=2150bp
gAAAAATAAACACATGCTAATTAGCAAAATCTTGATAGAGCTTGACCACA
ACCTGAAGACGGCTCAACAACGGTGGTAATGAGAACAAAGAAATGATCGT
CCGAAAACCAAATAAATCGTTCCCAAAGAATAAAAAGTGACGCATTTTAA
AACGAATGTTATCAACGTTTTTGTTTCAAGCTTACAGTGGCATGGCGAAA
AGAAGTATGAGGCATTTTCAAAGATGCCGTGATCAATCGACCATTTGTTT
GATTCATTTATGAAGGGGATGTTGAATCACTTGTGAATGGTGAGAAAGAA
CTTTGTCAAATTCACAGAAATACAAGTTAAGTATGCAAATTCggatcttt
tttaaaacagccTTCAATTGATTTATCCGTTTTTCATAAGTCAATATGAT
GAAAAGACTGTTTGTTGTCCTTTATTTCAACAAATGATAACGAACAGTCG
TAATGCTTCGATCATTAGTGATACTTCTCTAACGCTTCTTGAACTTGTTT
ATACAATGTACGTTTTTCGACGAACATAAAGGGTTTCCTTTGTGACAAAA
TGGTTGACAATAGAATTACTCGGGGAAGTTTCAATGTCTACATTcaatta
tcaagaaattttttaatgaaattgggGGTTGGGGAAGATCTGTACAACTC
AACTTCCATCGCTTCTGTAATCAGAGGTTGCCGTGGAAGTATGTTGACAG
AATCTCGTTTTcgattcttgaaaaaaattttttggtccAGATAAGATCTG
TACAACTCAACTTCCATCGCTTCTGTAATCAGAGGTTGCCGTGGAAGTAT
GTTAACAGAATCTTATTTACAACTTTAAGTAAATGGACCAATTATTATCG
CATGTTCTTAGATTGTTTGTGACAAAGTGACTGACCAAATGACTGCGACA
ATCTTATTGTTTACATCAAATAACTTTCTTGTTTACATTcaattatcaag
aaattttttaatgaaattgggGGTTGGGGAAGATCTGTACAACTCAACTT
CCATCGTCTCTGTAATCAGAGGTTGTCGTGGAAGTATGTTGACAGAATCT
CGTTTTcgattcttgaaaaaaaaaatattttggtccaAATAAGGATCTGT
ACAACTCAACTTCCATCGCTTCTATAATCAGAGGTTGTCGTGGAAGTATG
TTAACAGAATcttattttcaactttaaatAAATGGACCATTATTATCACA
TGTTCTTTGATTGTTTGTGACAAAGTGACTGACATGTTTAAATCATCACA
AAAGTAACTAACTTGTCTGTGGTTTAAATTTCAATTGCTTCTGTAATCGG
AGGTTTTCGTGGAATAGTTGATGGAACTTGGTTTTCGactctttaaccct
ttaagtgccattGTCGTaaatatcagacatgggctatgtaggagggcgaa
gccctcctgtaatgcatagtttgagttagaaatcgtcattttttggtcta
actcgtaggaattggattgggcttcatggccaagcaaaaaaaaatcaaaa
gtgagtcttttcagcgagattttaagttAAAAAGTAAACAAAATGCAAAA
GTTTGACAAAAACTTTTTAAAGATTTTAATCATTTTTTTTTTTACCATTT
TTAATCAACGAGTGATCCAAGAATATTCAAATTTGACCCAGATTTCTTGA
TTCTGTCTTCCAGCGAATTAATTCGTacttttaccactgggcacctttct
atcattcaggcaggtctgaaagaaaaaagagactCTAATCTATCCAACGC
ACTatgaacgagcttctaactccttcctatataagcctttaaagtttgaa
ctgcaagtagcgattttctttaaaaaaactttaaaaaaatgactgtggca
cttaaagggttacaGACAATTTTAGTTCAAGTAAGATCTGTATAACTCAA
CTTCCATCGCCTCTGTAATCTAAGTTGTCGTTGACATACCTTCATAgaat
cttgttttcaattcttaAAAGATGCTTTTGAACCATGCTTGTTTGTTCAT
ATTATTTGACATTGATAATTACTTACAGCTACTAACTGTTAGAAAAAGAA
ATTGGAATTAAACTGGATAATCTTTTCACCTTTAGAACACCCAGACTCCC
gtcttcttatttttcaaaaatcaggaaGCTATTTAAATCTCTGAAAATCG Run BLAST on NCBI transcript from alignment at scaffold_281:248791..251495+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056680 ID=TCONS_00056680|Name=TCONS_00056680|organism=Clytia hemisphaerica|type=transcript|length=2705bp|location=Sequence derived from alignment at scaffold_281:248791..251495+ (Clytia hemisphaerica)
gAAAAATAAACACATGCTAATTAGCAAAATCTTGATAGAGCTTGACCACA
ACCTGAAGACGGCTCAACAACGGTGGTAATGAGAACAAAGAAATGATCGT
CCGAAAACCAAATAAATCGTTCCCAAAGAATAAAAAGTGACGCATTTTAA
AACGAATGTTATCAACGTTTTTGTTTCAAGGTAGGTATCTTTTTATGTGT
TTTAAttttaaagttattattttcgaaGTAAATTAAAGTGCAATAAAGAA
TATGTGTccattgttttaattttttttacgaatttttcgCACATAGCTTA
CAGTGGCATGGCGAAAAGAAGTATGAGGCATTTTCAAAGATGCCGTGATC
AATCGACCATTTGTTTGATTCATTTATGAAGGGGATGTTGAATCACTTGT
GAATGGTGAGAAAGAACTTTGTCAAATTCACAGAAATACAAGTTAAGTAT
GCAAATTCggatcttttttaaaacagccTTCAATTGATTTATCCGTTTTT
CATAAGTCAATATGATGAAAAGACTGTTTGTTGTCCTTTATTTCAACAAA
TGATAACGAACAGTCGTAATGCTTCGATCATTAGTGATACTTCTCTAACG
CTTCTTGAACTTGTTTATACAATGTACGTTTTTCGACGAACATAAAGGGT
TTCCTTTGTGACAAAATGGTTGACAATAGAATTACTCGGGGAAGTTTCAA
TGTCTACATTcaattatcaagaaattttttaatgaaattgggGGTTGGGG
AAGATCTGTACAACTCAACTTCCATCGCTTCTGTAATCAGAGGTTGCCGT
GGAAGTATGTTGACAGAATCTCGTTTTcgattcttgaaaaaaattttttg
gtccAGATAAGATCTGTACAACTCAACTTCCATCGCTTCTGTAATCAGAG
GTTGCCGTGGAAGTATGTTAACAGAATCTTATTTACAACTTTAAGTAAAT
GGACCAATTATTATCGCATGTTCTTAGATTGTTTGTGACAAAGTGACTGA
CCAAATGACTGCGACAATCTTATTGTTTACATCAAATAACTTTCTTGTTT
ACATTtaattatcaagaaattttttaatgaaattgggGGTTGGGGAAGAT
CTGTACAACTCAACTTCCATCGTCTCTGTAATCAGAGGTTGTCGTGGAAG
TATGTTGACAGAATCTCGTTTTcgattcttgaaaaaaaatgttttggtcC
AAATAAGGATCTGTACAACTCAACTTCCATCGTCTCTGTAATCAGAGGTT
GTCGTGGAAGTATGTTGACAGAATCTCGTTTTcgattcttgaaaaaaaat
gttttggtcCAAATAAGGATCTGTACAACTCAACTTCCATCGCTTCTGTA
ATCAGAGGTTGCCGTGGAAGTATGTTGATAGAATcttattttcaacttta
aatAAATGGACCAATTATTATCGCATGTTCTTTGAATGATTGTTTGTGAC
AAAGTGACTGACCAAATGACTGCGACAATCTTATTGTTTACATTcaatta
tcaagaaattttttaatgaaattgggGGTTGGGGAAGATCTGTACAACTC
AACTTCCATCGTCTCTGTAATCAGAGGTTGTCGTGGAAGTATGTTGACAG
AATCTCGTTTTcgattcttgaaaaaaaaaatattttggtccaAATAAGGA
TCTGTACAACTCAACTTCCATCGCTTCTATAATCAGAGGTTGTCGTGGAA
GTATGTTAACAGAATcttattttcaactttaaatAAATGGACCATTATTA
TCACATGTTCTTTGATTGTTTGTGACAAAGTGACTGACATGTTTAAATCA
TCACAAAAGTAACTAACTTGTCTGTGGTTTAAATTTCAATTGCTTCTGTA
ATCGGAGGTTTTCGTGGAATAGTTGATGGAACTTGGTTTTCGactcttta
accctttaagtgccattGTCGTaaatatcagacatgggctatgtaggagg
gcgaagccctcctgtaatgcatagtttgagttagaaatcgtcattttttg
gtctaactcgtaggaattggattgggcttcatggccaagcaaaaaaaaat
caaaagtgagtcttttcagcgagattttaagttAAAAAGTAAACAAAATG
CAAAAGTTTGACAAAAACTTTTTAAAGATTTTAATCATTTTTTTTTTTAC
CATTTTTAATCAACGAGTGATCCAAGAATATTCAAATTTGACCCAGATTT
CTTGATTCTGTCTTCCAGCGAATTAATTCGTacttttaccactgggcacc
tttctatcattcaggcaggtctgaaagaaaaaagagactCTAATCTATCC
AACGCACTatgaacgagcttctaactccttcctatataagcctttaaagt
ttgaactgcaagtagcgattttctttaaaaaaactttaaaaaaatgactg
tggcacttaaagggttacaGACAATTTTAGTTCAAGTAAGATCTGTATAA
CTCAACTTCCATCGCCTCTGTAATCTAAGTTGTCGTTGACATACCTTCAT
AgaatcttgttttcaattcttaAAAGATGCTTTTGAACCATGCTTGTTTG
TTCATATTATTTGACATTGATAATTACTTACAGCTACTAACTGTTAGAAA
AAGAAATTGGAATTAAACTGGATAATCTTTTCACCTTTAGAACACCCAGA
CTCCCgtcttcttatttttcaaaaatcaggaaGCTATTTAAATCTCTGAA
AATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056680-exon-scaffold_281-1491911889:248791..248970 | TCONS_00056680-exon-scaffold_281-1491911889:248791..248970 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1510915933:248791..248970 | TCONS_00056680-exon-scaffold_281-1510915933:248791..248970 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1575043694:248791..248970 | TCONS_00056680-exon-scaffold_281-1575043694:248791..248970 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1491911889:249087..249842 | TCONS_00056680-exon-scaffold_281-1491911889:249087..249842 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1510915933:249087..249842 | TCONS_00056680-exon-scaffold_281-1510915933:249087..249842 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1575043694:249087..249842 | TCONS_00056680-exon-scaffold_281-1575043694:249087..249842 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1491911889:250282..251495 | TCONS_00056680-exon-scaffold_281-1491911889:250282..251495 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1510915933:250282..251495 | TCONS_00056680-exon-scaffold_281-1510915933:250282..251495 | Clytia hemisphaerica | exon |
| TCONS_00056680-exon-scaffold_281-1575043694:250282..251495 | TCONS_00056680-exon-scaffold_281-1575043694:250282..251495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:248791..251495 + |
Blast
The following BLAST results are available for this feature:
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