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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056681 ID=TCONS_00056681|Name=TCONS_00056681|organism=Clytia hemisphaerica|type=transcript|length=496bp
ACAATACTGATACCCTGATGGCTGCTAACGAAACCTCATCAACATTCTCC
TGGGAAGATGATTAATAAGAAAGTAGCGTATCTCAACGTTATTTCAAGGA
GTTTGGCAATGAGATTACCGTGATTCAGCCATGTAGATGCAAGATGGTCT
TCTAAAAATTGGAGGTAGCCATGTTGAATGCCAGCCCACATCAGTGATAA
CTCAACTGCATAGTTAGCGCAAGCTACAACTTGGCCTGGGTTAAGGAAAT
TTTTCCAGAATCGGAACTTGCAAACGTGATTGCAGATTGCCTTATACCTG
ATGTTATTATAAAAACGATCGAAGTTACAAACAGAGTATCTCGAGTTACT
GTAGAAAGATCTCTCTTACAATTGACGTTTGATGTATAAATGATTAAGaa
acCATGTTGCTTCACCAACCAATTTTCATACACCAACATTCATCTTCATC
CCGACGCAACATCATCAGTTCGAAGGACACTCTGACACTATCATTA Run BLAST on NCBI transcript from alignment at scaffold_281:256443..259313+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056681 ID=TCONS_00056681|Name=TCONS_00056681|organism=Clytia hemisphaerica|type=transcript|length=2871bp|location=Sequence derived from alignment at scaffold_281:256443..259313+ (Clytia hemisphaerica)
ACAATACTGATACCCTGATGGCTGCTAACGAAACCTCATCAACATTCTCC
TGGGAAGATGATTAATAAGAAAGTAGCGTATCTCAACGTTATTTCAAGGA
GTTTGGCAATGAGATTACCGTGATTCAGCCATGTAGATGCAAGATGGTCT
TCTAAAAATTGGAGGTAGCCATGTTGAATGCCAGCCCACATCAGTGATAA
CTCAACTGCATAGTTAGCGCAAGCTACAACTTGGCCTGGGTTAAGGAAAT
TTTTCCAGAATCGGAACTTGCAAACGTGATTGCAGATTGCCTTATACCTG
ATGTAAGTACTTTAAAAAATTGCGTAATTTTGGGTTTCTTTGAAAAACGT
GATGATTGCAattcaatacacgctttttttataagaatattgtaCTAATG
TTGGATTTGAGAGTTTGaacttttgagtgaacatttgggttaaaattaca
tttcttcatcaaagcttcaatttatctctaacaaaggaagcagttctTTC
TGTTAATCAAATACAAAAgggactgtattcttatcaaattctttgaAATT
CACCCTGGATGGTATTCTTAGGGTacattcttacgatttggccataactt
tcaccctgatattcttataaaaaagcgtgtattaagataaacttttcata
aatcatTTCTGGAGATTTTGATTGAATCAGTAAAAATTAATTTGAGAAAG
TGCTGTTCATGGCATGCATAAGTTATgttttacattttctttttctcaca
GGTTATTATAAAAACGATCGAAGTTACAAACAGAGTATCTCGAGTTACTG
TAGAAAGATCTCTCTTACAATTGACGTTTGATGTATAAATGATTAAGGTA
AGTTTTAAGTACAATTTGAATAATGCTCTTAATagagtctgttaaatgac
gcgccttacgcgcctgaATTTTGACGCGCCCTCTTACGTGCCTTATTATC
AACGCGCCCTAAATTTTTGACGTGCCTTACATTATTACTaccttaaattt
ttgtaaattttgacgcGATTTTTATTGCCCCCCGGCACGTGAAAGGCTAA
CGTTctgcaaaaaattattcagaaaaaaAGACGACAACAACGGcggttca
tttcattttttctgatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTTAAGCACAATTCTTTCCTGGCTTTGctaaagaa
ctaattaccgaaagcctAACTCcctcaaatcaaaagttattgattggttt
cttataaagacgatgcttataagaaaaataaatatgcccacCTTAAGCAC
AGTCCCTTACTTGCCTTGAAAATACTGCTTACCGAAAGCCTAATCCcctc
aaatcaaaagttattgattggttttttataaagaagatgcttataagaaa
aataaatatgcggACATTAAACACAATTCCTTATTTGCTTTGAAAAGAAC
TAATAGCGAGGTTAAATATCGGTTTTGCTCTAGAACACGTTTCCGTTCAG
TTTCTCTTTCTAGAGCAAATCCAATATTTTTGCCCGGGGTATGTCTGCCT
AGCTTTTGGGTTAGCCTGTAGAAAAGTGCCGTAGCGCgaacgaaggcttc
aaaaattcgtccgtcgtcctgAGTTATGTACTGATACTTAACCTCAGGGC
GCGTCGGTAATAAGGCAAGTAAGTAAGGCGCGCCAAAAATTTAGGGCACA
TCGATAATAAGGCGCGTAAGAAGGTGCGTCAAAACttaaaggcgcgtcga
aattcaggcgcgtagggcgcgtaaggcgcgtgggcgcgtcatttaacaga
ctccTCTTAATAAACTAAATCTAGGCAAATAGCTTCGAACATTTATCATT
GCATTTGATTGATATACACTCttgtttataagcatacgggaaaatctgtt
tttagtctaattttgatttttagaaacCATGTTGCTTCACCAACCAATTT
TCATACACCAACATTCATCTTCATCCCGACGCAACATCATCAGTTCGAAG
GACACTCTGACACTATCATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056681-exon-scaffold_281-1491911889:256443..256744 | TCONS_00056681-exon-scaffold_281-1491911889:256443..256744 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1510915933:256443..256744 | TCONS_00056681-exon-scaffold_281-1510915933:256443..256744 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1575043694:256443..256744 | TCONS_00056681-exon-scaffold_281-1575043694:256443..256744 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1491911889:257194..257289 | TCONS_00056681-exon-scaffold_281-1491911889:257194..257289 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1510915933:257194..257289 | TCONS_00056681-exon-scaffold_281-1510915933:257194..257289 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1575043694:257194..257289 | TCONS_00056681-exon-scaffold_281-1575043694:257194..257289 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1491911889:259216..259313 | TCONS_00056681-exon-scaffold_281-1491911889:259216..259313 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1510915933:259216..259313 | TCONS_00056681-exon-scaffold_281-1510915933:259216..259313 | Clytia hemisphaerica | exon |
| TCONS_00056681-exon-scaffold_281-1575043694:259216..259313 | TCONS_00056681-exon-scaffold_281-1575043694:259216..259313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_281 | supercontig | scaffold_281:256443..259313 + |
Blast
The following BLAST results are available for this feature:
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