TCONS_00056690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056690
Unique NameTCONS_00056690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056690 ID=TCONS_00056690|Name=TCONS_00056690|organism=Clytia hemisphaerica|type=transcript|length=346bp
GTTTGGAGTTATGACAACGAACAATTTCTATCACAGAGATTTTCTCCTGG
AatataaagcATTGATGCGACAGAGGACACACATTTTTGCCGTTATGTGA
ATGATTCGCCAAAAGATCTGGCTAATTGTGTCATGAAGAGGGAGGTGATC
GATGGCGTTGTTTACCCTGTCTTGAGGGCCAATCAAGACATTCCTAAGGG
AACTGAATTAAGataTGATTACGGTGACGACCAAGATGAAATGCCCTGGA
GAGCTAAGgaagattCGTTGAAGCCTCGTTACCAAGTCGATGGCGATGTC
GTCCCCCCAACTCCTGTAAAAAAGGGTGGCAAAGACAGTATTTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_281:372826..374746-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056690 ID=TCONS_00056690|Name=TCONS_00056690|organism=Clytia hemisphaerica|type=transcript|length=1921bp|location=Sequence derived from alignment at scaffold_281:372826..374746- (Clytia hemisphaerica)
GTTTGGAGTTATGACAACGAACAATTTCTATCACAGAGATTTTCTCCTGG
AATATAAAGGTCAGTAAACAATCTGTATATTTTGTGTAGTTAAGCAAGAT
TCTTTCATTGTTCTTTTCTTGTGTTTTTCCCTTTGCCATAATAACCAAAT
TAATTGTTAATTAAATTTAAATTTATGGATTGTATTTCACAGGTCCTCTG
AAACAATTCAATTTATATACACTTTTAAACACCAGGGCCTGTAACTACTC
ACGTTCCAATTTCTATTTTGCTTTCAGTTTGTTTCTTCTTACAAATTTTC
TTGAAGTATAGCTCAGCCCGAGTTTGTTTGTCAGGAAGATTCAAAGTTTA
ATATTCTAAAGACTTGCTTCAGTTGTATAAAAATACCACTTTAGGTGAAA
GGATCTCAAAGGAGGAAGCTAGGTTGAGGGAGAAACAATACAAGGAGAAA
GGAATTGGTTGTTATATTTTTGATATCGAAGGCATTACCAAGAAATTCTG
GTAAATTGTTTTCAGAAAATTTATATTATCCTGGCCTAATAGCTGTTCCA
AGCTCATAATAAACCAGCTGCGCTGGAAGGTTAGCCCAAAAGGATGAGAT
AGATTAAAAGATTAGCGAGAGTAGCAAAAAGTGTGATCACAGGATAAAGA
TGTCAACTATTCTTGGAGGTGGCTTAGGAAAAGTGGGTGAAAGAAATATG
TTTCTGACATGAAAGAAGATAGAGAAACTGTTCCTTATGTTATCTTTTTT
TAGCATTGATGCGACAGAGGACACACATTTTTGCCGGTGAGTGAAACAAA
CCCACATTTTTTAAGAGGTCAGAGTAAAATGAGCCACGAATGTGACTCCC
TAAGTGATTTGGAGGAAATCAAAAAGTTAGCGCTAATAGCTTATAAACAA
ACGAATGAGGCAAATAGTAACCTAGATGATATCCGACATGAGCTTTATAC
TCCTATACTCTCACGGTCACAATTATTTATTCTTGAAATCGTAAATGTTT
CGCAGCTTTTCTAAATTATGTTAACCACCATTTATTGGAAATTCATCTTT
GAAAAAGGGAAAATTTCTTTTTGTTTTGATAAATATACAACAAACTATGC
ATTGTGAGCTTACATGAGTACACAATTGCATTTGTTACCATAATTGCTTC
TGATTTTTCTCAGTTATGTGAATGATTCGCCAAAAGATCTGGCTAATTGT
GTCATGAAGAGGGAGGTGATCGATGGCGTTGTTTACCCTGTCTTGAGGGC
CAATCAAGACATTCCTAAGGGAACTGAATTAAGGTACTTAGTTACTTTTT
GTATGTTATACATCTCTTAATTCTAAAATAAGTTGTATAGCAAAATGCAA
AACAAATATTTGAAACACAAAAAGAAACCATGGGACACATACTTTTTTTC
TTGTGTTGGTGAGATGGAACATGTTACATTGCACCAACGCAAAAAAGAAT
TTCTTTTGTCCCAAGCCTTAAGCAGAAAATTTCAATCTGAATTGAAAACG
CAAAAATCTTGTTTGAAAGTAATTTTGTTGCCGAAAAGGATCTACTAGTA
GGACTTTTTTAAATTTAGATATGATTACGGTGACGACCAAGATGAAATGC
CCTGGAGAGCTAAGGTAAATTTTGGTTTAAACTTTCAAACAACTTTGCAA
CTTTGCAATTATTAAAAAATCAAAGCATCCTTTTGATGTTTTAATGTTTA
CATTTCTTACTTATTCATCAAGATCTTTTTTTTTTCAGGAAGATTCGTTG
AAGCCTCGTTACCAAGTCGATGGCGATGTCGTCCCCCCAACTCCTGTAAA
AAAGGTATTTTATAAATGTCTAAATATTCGTAAGTCAGATCTGATTGTAA
TCAACGCTTTAAAAAAATTCTTGTTGACATTGACACTTTCCTTTTTTAGG
GTGGCAAAGACAGTATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035709XLOC_035709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056690-exon-scaffold_281-1575043694:374688..374746TCONS_00056690-exon-scaffold_281-1575043694:374688..374746Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1575043694:373961..373993TCONS_00056690-exon-scaffold_281-1575043694:373961..373993Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1575043694:373464..373583TCONS_00056690-exon-scaffold_281-1575043694:373464..373583Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1575043694:373133..373178TCONS_00056690-exon-scaffold_281-1575043694:373133..373178Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1575043694:372943..373008TCONS_00056690-exon-scaffold_281-1575043694:372943..373008Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1575043694:372826..372847TCONS_00056690-exon-scaffold_281-1575043694:372826..372847Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1510915933:374688..374746TCONS_00056690-exon-scaffold_281-1510915933:374688..374746Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1510915933:373961..373993TCONS_00056690-exon-scaffold_281-1510915933:373961..373993Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1510915933:373464..373583TCONS_00056690-exon-scaffold_281-1510915933:373464..373583Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1510915933:373133..373178TCONS_00056690-exon-scaffold_281-1510915933:373133..373178Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1510915933:372943..373008TCONS_00056690-exon-scaffold_281-1510915933:372943..373008Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1510915933:372826..372847TCONS_00056690-exon-scaffold_281-1510915933:372826..372847Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1491911889:374688..374746TCONS_00056690-exon-scaffold_281-1491911889:374688..374746Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1491911889:373961..373993TCONS_00056690-exon-scaffold_281-1491911889:373961..373993Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1491911889:373464..373583TCONS_00056690-exon-scaffold_281-1491911889:373464..373583Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1491911889:373133..373178TCONS_00056690-exon-scaffold_281-1491911889:373133..373178Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1491911889:372943..373008TCONS_00056690-exon-scaffold_281-1491911889:372943..373008Clytia hemisphaericaexon
TCONS_00056690-exon-scaffold_281-1491911889:372826..372847TCONS_00056690-exon-scaffold_281-1491911889:372826..372847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:372826..374746 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.19068	4.69134	2.66348	5.92211	0	7.02786	3.93543	4.1392	4.30567	5.00806	0	0.157803	0	0	0	0.288062	0	0	0	0	3.05838	6.45163	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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