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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056727 ID=TCONS_00056727|Name=TCONS_00056727|organism=Clytia hemisphaerica|type=transcript|length=1831bpRun BLAST on NCBI transcript from alignment at scaffold_282:117651..146014+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056727 ID=TCONS_00056727|Name=TCONS_00056727|organism=Clytia hemisphaerica|type=transcript|length=28364bp|location=Sequence derived from alignment at scaffold_282:117651..146014+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056727 vs. Swiss-Prot (Human)
Match: CDC27 (Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27 PE=1 SV=2) HSP 1 Score: 346.28 bits (887), Expect = 1.487e-107 Identity = 234/643 (36.39%), Postives = 340/643 (52.88%), Query Frame = 1
Query: 4 RYLFAVICYQLDKLREAELALTG-IYNPINPKTPTAIASEFGSMAGMALQLLGNIYKKSESIPRAVAHYKQSLKCNPFLWHSYECLCNLGEKVDPTDYFKRMDSGKISPLFQSGNTPFQLPQPQVSPLNPLPQYDNTPSENQDPTKAVPLLTSTVIKTSTKGFTCQSIINKSTPDIEMPPPSSIGRNARQRILRSQA-----------------SPVTPSFGLLP-ETVSPIVDGGGGGTPMFI-TPPISSLSSKVPTKAPQK---APSKKTTIKCTSSQKPSNHSDVSTPSQSPRESDG------------------GALHXXXXXXXXXXXXXXXXDMKRTPKVKFDDNVKVGVTPGRKTKSRVSRPITTTPLTPTSQNI-QVTTSCTTGGKHKQINTHKEIKDEKPTLPSPIQQSADGLMKLLVDIGKAYSAMATYDCRKAIELLEQLPLHQLTTSCMLEKLAICYYESGNNDMAEKAFGKVQELDPCYIDEGMAMFSSLLWLTRKEMRLSSLAQNLVDHDKNSPVAWCAMANCFSLQKEHDQAIKYLERAIQLKPDLAYAYTLLGHEYVFTDENERALSCFRSAIRYNERHYNAWYGIGMIYYKQEKYTLAEQHYQKALKIHPKHSVLLCNLAVVSKGI 1806
+YL A C L KL E E L+G ++N K+ I +EFG A L LLG++Y K++ + + Y++SL NPFLW +E LC +GEK DP FK S + T Q+P +S P TP + + L +++S ++ + + S D + P ++ IL Q SP+TPSFG+LP ET SP G G + TPP+ + S T AP K A +T K SQ S +S TP + +S G AL S+++ + K+ K+KF + P RKTKS+ ++ T P S I ++ +S + GK I + + + + +A+GLM LL ++GK Y A+ +Y+C++AI +L LP H T +L ++ Y+E AE+ F +V+ ++ Y EGM ++S+ LW +K++ LS L+++L D DKNSP AWCA NCFSLQ+EHD AIK+ +RAIQ+ P+ AYAYTLLGHE+V T+E ++AL+CFR+AIR N RHYNAWYG+GMIYYKQEK++LAE H+QKAL I+P+ SVLLC++ VV +
Sbjct: 72 KYLLAKCCVDLSKLAEGEQILSGGVFN--KQKSHDDIVTEFGDSACFTLSLLGHVYCKTDRLAKGSECYQKSLSLNPFLWSPFESLCEIGEKPDPDQTFKFTSLQNFSNCLPNSCTT-QVPNHSLSHRQPETVLTETPQDTIE-------LNRLNLESSNSKYSLNTDSSVSYIDSAVISPDTVPLGTGTSILSKQVQNKPKTGRSLLGGPAALSPLTPSFGILPLETPSP---GDGSYLQNYTNTPPVIDVPS---TGAPSKKSVARIGQTGTKSVFSQ--SGNSREVTPILAQTQSSGPQTSTTPQVLSPTITSPPNALPRRSSRLFTSDSSTTKENSKKL-KMKFPPKI-----PNRKTKSKTNKGGITQPNINDSLEITKLDSSIISEGKISTITPQIQAFNLQ-------KAAAEGLMSLLREMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRRIEN-YRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHAL 682 The following BLAST results are available for this feature:
BLAST of TCONS_00056727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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