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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056730 ID=TCONS_00056730|Name=TCONS_00056730|organism=Clytia hemisphaerica|type=transcript|length=2944bp
CTCTAGcttaaaatacataaaaatggaaattaaaaATCGTGACaaaatgc
aaaatatttttttcgcaTCAGTAAAATTTGTCAGTAttcattgggctatt
ccattttatatccatacagggggtggacgaacatttccagagggtaatct
gagaacaatttccaggggatgttttttcatttttccaagggggtaaaaag
ttattctaaaatttccagtggTTTAAAGACTGAtgttagttcgtccaccc
tcgctttaaggtatgaaaagaatttttccaagggtatttttttgcaaatt
tttccattttccagttgttctccacacattttcaataatttctttttgac
ttgaaaaggttcgtccaccccctgtatggttttttatgGAACAgtccatt
ttttaaagattgataATTATTGATAGATACTGTAAAATATCTCTCCTGAA
AGCTAACACAATCATAATGTCATTTTTAAAGGCGCTGACCATTAGTAGGG
AAGTCATTTTATACATTGACcgattcagaaaaaaaaatggtTCGTATAAT
TTGCTCTCTCATCCAGCAGAACATCATTTATGGTTCTCTGTTACATACAA
ATAGCAATAAGTGAATACGTCATTCTTCCATTTTCAATTCTTTACTATCA
ACAATACCAGGACCAGGTAAAACATCTGTCAAACCCAGTCCATTAATAAT
ATCCAAAACTTTTTGCTTATCAACTGGATTAGAGCATCTCTCATACATCA
GTCTCATTTTCTTGGTATTATAACCCAACAAATATCTTTCAGCAGATTTC
AATGTCCCTGTCACATGTATACAAGATAAAACACAAAGTCTTTGTCGCAA
CATTTTCACGAAAGATACACATGTTCGTACTTCACGGTGATAGTCTCTGG
CTACTTGTAAGAAAAATAtcccagtatatggatttgtgtattttacataC
ATCCCTTGAGTAAAAGTTGTTTGACCGTATTCTCCATAGAGTTCTTTTAC
AATGTTTTTGATCGTATTTTTTATGGTATCTTTGTCTAGATTAAGGTCGA
TTTTCTCATCCGCATACTGTATTTTGATGaccaaatatctgttctttttc
cGCACCATTTTGTATTAGTTTTGTCTTTGAGGTATCTGAAactggaaaaa
aaatatcagaGTCATATTACACTTTGATCATTAACAACAAAGTATTTTTG
CAGCAAATTCTTATTAGATTTTATAAACCAAGCATGGATTTGGGTGATAG
CTGGGTGATACCATCACTCAACTTGcacagaaaattttcaaaaatatatt
gacacaGATATACATCAAAGTTATTTCTCTATTTCGACAAATTTAACTAA
TTTTATTCGAAAAATTCCAATATTTACATCAATACGGGAAATTTCTGTGC
TTCTCGAATTTTCTGATCTTGCAATGCCcttttgtaaaaatgttttaGAG
AAAATTTATGTCCAACAAAGAGCAAAATAGGTCCTGTGATAATTAAACTG
GGACCTCAAAATTTAATCGCACCAAAAATTTCCCTACTACTAAATAAAAA
AGTGATGATTAATTGTAAATTGAGTATGATACTTCTTATTAATACGGTAG
AAATTTGTAATAGCTATGGTTATACGTTATTATCCACATATAATTCAATT
GAGGTTGAAAAAGCACACTTGTATCAAGCAAGAAGGGTGTTTATAAAAGA
ATGGTATAGGTGTCAGTAAAAAAACAATTATgaattaaaataataaaaat
acatAAACGGTATCCTCAAGTTGATTTGAAAgctatattttgtttttgac
aTCATTATACCATTCGTTCAATTTATATTCATCTAGAGCTTGGTAAAAAT
ATCTCCACCATAAGATGACCATATCCCATGGCTCCTTGAAAGGGCCTTTA
AATTTAGCGACATCTTGACGTGTGGGTTTGTTTTTCACTTGCCAGGGCTT
CTTGGTTAAGCAGCATGCgaaatgataaattttcaacGGGTGATACAAAT
AACGGCGAACATTATAAGCGTATGGTAATTCATTCCACATATCATGATCC
GCATAATAATGCCATAATAACACTTGGTCATTAGGACATTCTGTACCTTT
TGTTAAATCACCCCATAAATTCATCAACCCATTATAATGCTTTGTGGACG
GTTTAAACAAGATAATCCCTGCATTGAAACATGGATCAATAATACCAGGT
CTGGCACAATAAGCAGCATTGAAATCGGTCTCCAAATCAAATAACTCATC
AACACTGACTACAGGAACGACATCAGAATCTAGATACATAATTTTCTTAT
ATTGGGTATAATTCCACGCATGAAATCTCATGAAAGTTCCCGGTAATCCT
AAATTCCGCTCTTTCCTGCCCTTTTGTCGGTCCATCCAATTACAATCTAG
TGCTTCAACAAGTTTAACTTCAAAGCCAACTTTTCTTAATGCTTCTCGTG
TTCCTGGAGTCACACCATCAGAAACTAAAACAATCAATTTATGATAACAA
gataattttttcaacataTGACCAAGTTGGATAGCACCTATTGCATAATT
ATCATTCAACATTGCGGTCAACCAAGCATAAGGTTCCTTGCCACGGTTAT
CTTCTTTACATTTCTGTTGGTAATACCTCATGTCCATTTCATGTAACTGG
TATTCCATTTCCCAAGAGATTTCTTCAGCCCTCTTAACTCTTTCTTCATC
CTTGCTAGCCATTGAAACAATCAGTCTCACATATTGAATCATGTATTGAA
AAACAAGAGGGGCACATAAGCGGAACAgagcaaaaaataaaacaatgccc
ACAAATGCTCTAAAATAGTTTGATTGATGGAATgccattatttatttttt
tcagttcattgacatttttttcgctaaaaaaaataataaacataCAGATT
GTTATAGCCAGAATAGTTAAAGTTTTTGACATGACAGACAGCAG Run BLAST on NCBI transcript from alignment at scaffold_282:190025..193025+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056730 ID=TCONS_00056730|Name=TCONS_00056730|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at scaffold_282:190025..193025+ (Clytia hemisphaerica)
CTCTAGcttaaaatacataaaaatggaaattaaaaATCGTGACaaaatgc
aaaatatttttttcgcaTCAGTAAAATTTGTCAGTAttcattgggctatt
ccattttatatccatacagggggtggacgaacatttccagagggtaatct
gagaacaatttccaggggatgttttttcatttttccaagggggtaaaaag
ttattctaaaatttccagtggTTTAAAGACTGAtgttagttcgtccaccc
tcgctttaaggtatgaaaagaatttttccaagggtatttttttgcaaatt
tttccattttccagttgttctccacacattttcaataatttctttttgac
ttgaaaaggttcgtccaccccctgtatggttttttatgGAACAgtccatt
ttttaaagattgataATTATTGATAGATACTGTAAAATATCTCTCCTGAA
AGCTAACACAATCATAATGTCATTTTTAAAGGCGCTGACCATTAGTAGGG
AAGTCATTTTATACATTGACcgattcagaaaaaaaaatggtTCGTATAAT
TTGCTCTCTCATCCAGCAGAACATCATTTATGGTTCTCTGTTACATACAA
ATAGCAATAAGTGAATACGTCATTCTTCCATTTTCAATTCTTTACTATCA
ACAATACCAGGACCAGGTAAAACATCTGTCAAACCCAGTCCATTAATAAT
ATCCAAAACTTTTTGCTTATCAACTGGATTAGAGCATCTCTCATACATCA
GTCTCATTTTCTTGGTATTATAACCCAACAAATATCTTTCAGCAGATTTC
AATGTCCCTGTCACATGTATACAAGATAAAACACAAAGTCTTTGTCGCAG
CATTTTCACGAAAGATNTCACATGTATACAAGATAAAACACAAAGTCTTT
GTCGCAACATTTTCACGAAAGATACACATGTTCGTACTTCACGGTGATAG
TCTCTGGCTACTTGTAAGAAAAATAtcccagtatatggatttgtgtattt
tacataCATCCCTTGAGTAAAAGTTGTTTGACCGTATTCTCCATAGAGTT
CTTTTACAATGTTTTTGATCGTATTTTTTATGGTATCTTTGTCTAGATTA
AGGTCGATTTTCTCATCCGCATACTGTATTTTGATGaccaaatatctgtt
ctttttccGCACCATTTTGTATTAGTTTTGTCTTTGAGGTATCTGAAact
ggaaaaaaaatatcagaGTCATATTACACTTTGATCATTAACAACAAAGT
ATTTTTGCAGCAAATTCTTATTAGATTTTATAAACCAAGCATGGATTTGG
GTGATAGCTGGGTGATACCATCACTCAACTTGcacagaaaattttcaaaa
atatattgacacaGATATACATCAAAGTTATTTCTCTATTTCGACAAATT
TAACTAATTTTATTCGAAAAATTCCAATATTTACATCAATACGGGAAATT
TCTGTGCTTCTCGAATTTTCTGATCTTGCAATGCCcttttgtaaaaatgt
tttaGAGAAAATTTATGTCCAACAAAGAGCAAAATAGGTCCTGTGATAAT
TAAACTGGGACCTCAAAATTTAATCGCACCAAAAATTTCCCTACTACTAA
ATAAAAAAGTGATGATTAATTGTAAATTGAGTATGATACTTCTTATTAAT
ACGGTAGAAATTTGTAATAGCTATGGTTATACGTTATTATCCACATATAA
TTCAATTGAGGTTGAAAAAGCACACTTGTATCAAGCAAGAAGGGTGTTTA
TAAAAGAATGGTATAGGTGTCAGTAAAAAAACAATTATgaattaaaataa
taaaaatacatAAACGGTATCCTCAAGTTGATTTGAAAgctatattttgt
ttttgacaTCATTATACCATTCGTTCAATTTATATTCATCTAGAGCTTGG
TAAAAATATCTCCACCATAAGATGACCATATCCCATGGCTCCTTGAAAGG
GCCTTTAAATTTAGCGACATCTTGACGTGTGGGTTTGTTTTTCACTTGCC
AGGGCTTCTTGGTTAAGCAGCATGCgaaatgataaattttcaacGGGTGA
TACAAATAACGGCGAACATTATAAGCGTATGGTAATTCATTCCACATATC
ATGATCCGCATAATAATGCCATAATAACACTTGGTCATTAGGACATTCTG
TACCTTTTGTTAAATCACCCCATAAATTCATCAACCCATTATAATGCTTT
GTGGACGGTTTAAACAAGATAATCCCTGCATTGAAACATGGATCAATAAT
ACCAGGTCTGGCACAATAAGCAGCATTGAAATCGGTCTCCAAATCAAATA
ACTCATCAACACTGACTACAGGAACGACATCAGAATCTAGATACATAATT
TTCTTATATTGGGTATAATTCCACGCATGAAATCTCATGAAAGTTCCCGG
TAATCCTAAATTCCGCTCTTTCCTGCCCTTTTGTCGGTCCATCCAATTAC
AATCTAGTGCTTCAACAAGTTTAACTTCAAAGCCAACTTTTCTTAATGCT
TCTCGTGTTCCTGGAGTCACACCATCAGAAACTAAAACAATCAATTTATG
ATAACAAgataattttttcaacataTGACCAAGTTGGATAGCACCTATTG
CATAATTATCATTCAACATTGCGGTCAACCAAGCATAAGGTTCCTTGCCA
CGGTTATCTTCTTTACATTTCTGTTGGTAATACCTCATGTCCATTTCATG
TAACTGGTATTCCATTTCCCAAGAGATTTCTTCAGCCCTCTTAACTCTTT
CTTCATCCTTGCTAGCCATTGAAACAATCAGTCTCACATATTGAATCATG
TATTGAAAAACAAGAGGGGCACATAAGCGGAACAgagcaaaaaataaaac
aatgcccACAAATGCTCTAAAATAGTTTGATTGATGGAATgccattattt
atttttttcagttcattgacatttttttcgctaaaaaaaataataaacat
aCAGATTGTTATAGCCAGAATAGTTAAAGTTTTTGACATGACAGACAGCA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056730-exon-scaffold_282-1491911889:190025..190838 | TCONS_00056730-exon-scaffold_282-1491911889:190025..190838 | Clytia hemisphaerica | exon |
| TCONS_00056730-exon-scaffold_282-1510915933:190025..190838 | TCONS_00056730-exon-scaffold_282-1510915933:190025..190838 | Clytia hemisphaerica | exon |
| TCONS_00056730-exon-scaffold_282-1575043694:190025..190838 | TCONS_00056730-exon-scaffold_282-1575043694:190025..190838 | Clytia hemisphaerica | exon |
| TCONS_00056730-exon-scaffold_282-1491911889:190896..193025 | TCONS_00056730-exon-scaffold_282-1491911889:190896..193025 | Clytia hemisphaerica | exon |
| TCONS_00056730-exon-scaffold_282-1510915933:190896..193025 | TCONS_00056730-exon-scaffold_282-1510915933:190896..193025 | Clytia hemisphaerica | exon |
| TCONS_00056730-exon-scaffold_282-1575043694:190896..193025 | TCONS_00056730-exon-scaffold_282-1575043694:190896..193025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:190025..193025 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029044 | Nucleotide-diphossugar_trans |
| IPR002495 | Glyco_trans_8 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016757 | transferase activity, transferring glycosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016757 |
transferase activity, transferring glycosyl groups |
Blast
BLAST of TCONS_00056730 vs. Swiss-Prot (Human)
Match: GLYG (Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4) HSP 1 Score: 104.76 bits (260), Expect = 8.317e-24 Identity = 91/290 (31.38%), Postives = 144/290 (49.66%), Query Frame = -2
Query: 1753 AWLTAMLNDNYAIGAIQLGHMLKKLSCYHKLIVLVSDGVTPGTREALRKVGFEVKLVEALDCNWMDRQKGRKERNLGLPGTFMRFHAWNYTQYKKIMYLXXXXXXXXXXDELFDLETDFNAAYCARPGIIDPCFNAGIILFKPSTKHYNGLMNLWGDLTKGTECPNDQVLLWHYY---ADHDMWNELPYAYNVRR---YLYHP--------LKIYHFACCLTKKPWQVKNKPTRQDV-AKFKGPFKEPWDMVILWWRYFYQALDEYKLNEWYNDVKNKI*LSNQLEDTVY 2577
A++T ND YA GA+ LG LK+ +L+VL + V+ R+ L V EV +V+ LD K LG+ T + H W+ TQY K +++D+D + + ++D+LFD E + +AA PG D CFN+G+ +++PS + YN L++L + +G+ DQ +L ++ A D+ LP+ YN+ Y Y P K+ HF + KPW P + V ++ P + +ILWW F + L + + VK+ N L D VY
Sbjct: 5 AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGV--TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE-ELSAA--PDPGWPD-CFNSGVFVYQPSVETYNQLLHLASE--QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRV--KPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIF--TTNVLPLLQQFGLVKDTCSYVNVLSDLVY 282
The following BLAST results are available for this feature:
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