TCONS_00056775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056775
Unique NameTCONS_00056775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056775 ID=TCONS_00056775|Name=TCONS_00056775|organism=Clytia hemisphaerica|type=transcript|length=1173bp
CATCCTTCTTGTAATACTGAAGACAACAGAGGCTTCTTTGTGTGGTGACA
TCCTCCTGGAGTTTATGCTCCATTGCGTCAAATAATGGATATTATACATA
TTATACTTTTCTTGCACACAGCAGAGTAAATCAAACACTTTGAAATAAAG
TCAAGACTGTGAGGATGTTACTGGATGAATGTTTTTGCAGCTACCATTCT
TTACAACAACAACATAATAATTTAACGCAAAAACTTCAACATTTGGAAGT
TCATAACAGATGTCAACAACAGGAGCTTATAAATGGAAATTATCATCATC
AACACCAAAATGTAACACCACTACCAAATGGGggtaaaaagagaaatttt
tcttCAGTGGATGACAATGGCGATGTAGATATGGAATGCCAAGGGGCAAG
ATGCAATACCATGAATCAACAGCgaaaacgTGCAAAATCCAATGAAGTCC
AAGTAAATGGAAATGCAAACTTTTCACGAATGGCTCAAtcacaaaatcaa
aatcaacaacAGATGCAAGTTGCTGAGAAATCACTGATATCAACAAAACC
TTGTGTGCGCTGTATGAATGGAGAACCTgGTCACATCAATCACATCATGA
ATCAGGAAGTTGAAATGGAGGAGTGAAAGCAacacatttttgaaaagatt
tctttcaaagaagagaaaggattttttcatttttttaggttttgctGGTT
TCACCATGTCTATATAAACACAGGCACTTTAAACCCTGTCCTGGATTGCT
GTAATGCTCAACTACAACGTAAAAATCAATGCAGGGCAGATTGGGGATTT
AAAATTCAAGGCATTTTTTAATTATCAAAGGTTTTTATTTAGATACTTTA
TACACTGTAAATACTGTAGCAATATTGTTGTTTAACCAACCagatttata
ttatttttatttgcatTTCCATATAGGGATTGCCCTACATAGTTGGACCA
AGGGCAGGCATGATCGTTCACTATTCCTTGCAAGAGTTTGCTGCTTACGT
TTGCAATCTAATTTTATCACTATATATTTGTTGttaaaaagctattttta
ttttgttgaggttgtaatattttttgttgttgttttgaaaaaataacaaa
ttttgcaGCAATGCTAACAAATTGGCATGCTATAAAACTGGTTGATAATA
TATccatagctgtcaactttgcG
Run BLAST on NCBI

protein sequence of TCONS_00056775-protein

>TCONS_00056775-protein ID=TCONS_00056775-protein|Name=TCONS_00056775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MLLDECFCSYHSLQQQHNNLTQKLQHLEVHNRCQQQELINGNYHHQHQNV
TPLPNGGKKRNFSSVDDNGDVDMECQGARCNTMNQQRKRAKSNEVQVNGN
ANFSRMAQSQNQNQQQMQVAEKSLISTKPCVRCMNGEPGHINHIMNQEVE
MEE
Run BLAST on NCBI

transcript from alignment at scaffold_282:193581..195348-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056775 ID=TCONS_00056775|Name=TCONS_00056775|organism=Clytia hemisphaerica|type=transcript|length=1768bp|location=Sequence derived from alignment at scaffold_282:193581..195348- (Clytia hemisphaerica)
CATCCTTCTTGTAATACTGAAGACAACAGAGGCTTCTTTGTGTGGTGACA
TCCTCCTGGAGTTTATGCTCCATTGCGTCAAATAATGGATATTATACATA
TTATACTTTTCTTGCACACAGCAGAGTAAATCAAACACTTTGAAATAAAG
TCAAGACTGTGAGGATGTTACTGGATGAATGTTTTTGCAGCTACCATTCT
TTACAACAACAACATAATAATTTAACGCAAAAACTTCAACATTTGGAAGT
TCATAACAGATGTCAACAACATGAGCTTATAAATGGAAATTATCATCATC
AACACCAAAATGTAACNAGTTCATAACAGATGTCAACAACAGGAGCTTAT
AAATGGAAATTATCATCATCAACACCAAAATGTAACACCACTACCAAATG
GGGGTAAAAAGAGAAATTTTTCTTCAGTGGATGACAATGGCGATGTAGAT
ATGGAATGCCAAGGGGCAAGATGCAATACCATGAATCAACAGCGAAAAGT
ATTTTTTGTTTTCCATCAATTCCCATATATTTACTTTGAGAAAATTCTAC
ACAGATAGCATTTTGTTATAACACCAATGATTGGAAATCCTCTGGATGAC
TATAAATACAATGGGAATTATGCTTTGGCTACTGGCTGTATTTGGCTACT
TTATTTGAATGTGTTATTCAAAAGATAATTGTGTTGTATTTCTTTATCTG
ACTATTCACGTATCAAAATAAGTTTGCTAATTATATTGAACCAAAATTTT
ATTTTCAGCGTGCAAAATCCAATGAAGTCCAAGTAAATGGAAATGCAAAC
TTTTCACGAATGGTACAACTTTTGTTTATTTTTTTTAGTACTTAAAACAA
AACTTTTTTATCATAGTTTTCTGGTCTATTTTAGCAAATCGAAATCTCTG
TTCTTTAGGCTCAATCACAAAATCAAAATCAACAACAGATGCAAGTTGCT
GAGAAATCACTGATATCAACAAAACCTTGTGTGCGCTGTATGAATGGAGA
ACCTGTATGTAGCTCTCTTTTTGAAAATATTTTTCTAAACAAAACATATG
AGAAAAAAGACTGTTTATCATAATTTACTATCTATTGTAACATTTTTTAA
ACTGCTCCAAGATCTCTTTCCACTCTTTCATATTCTAACAAGTTCTCAAA
TACTAATCTTTGTTATTTTTTAGGGTCACATCAATCACATCATGAATCAG
GAAGTTGAAATGGAGGAGTGAAAGCAACACATTTTTGAAAAGATTTCTTT
CAAAGAAGAGAAAGGATTTTTTCATTTTTTTAGGTTTTGCTGGTTTCACC
ATGTCTATATAAACACAGGCACTTTAAACCCTGTCCTGGATTGCTGTAAT
GCTCAACTACAACGTAAAAATCAATGCAGGGCAGATTGGGGATTTAAAAT
TCAAGGCATTTTTTAATTATCAAAGGTTTTTATTTAGATACTTTATACAC
TGTAAATACTGTAGCAATATTGTTGTTTAACCAACCAGATTTATATTATT
TTTATTTGCATTTCCATATAGGGATTGCCCTACATAGTTGGACCAAGGGC
AGGCATGATCGTTCACTATTCCTTGCAAGAGTTTGCTGCTTACGTTTGCA
ATCTAATTTTATCACTATATATTTGTTGTTAAAAAGCTATTTTTATTTTG
TTGAGGTTGTAATATTTTTTGTTGTTGTTTTGAAAAAATAACAAATTTTG
CAGCAATGCTAACAAATTGGCATGCTATAAAACTGGTTGATAATATATCC
ATAGCTGTCAACTTTGCG

Coding sequence (CDS) from alignment at scaffold_282:193581..195348-

>TCONS_00056775 ID=TCONS_00056775|Name=TCONS_00056775|organism=Clytia hemisphaerica|type=CDS|length=2310bp|location=Sequence derived from alignment at scaffold_282:193581..195348- (Clytia hemisphaerica)
GGTCACATCAATCACATCATGAATCAGGAAGTTGAAATGGAGGAGTGAGC
TCAATCACAAAATCAAAATCAACAACAGATGCAAGTTGCTGAGAAATCAC
TGATATCAACAAAACCTTGTGTGCGCTGTATGAATGGAGAACCTCGTGCA
AAATCCAATGAAGTCCAAGTAAATGGAAATGCAAACTTTTCACGAATGAG
GAGCTTATAAATGGAAATTATCATCATCAACACCAAAATGTAACACCACT
ACCAAATGGGGGTAAAAAGAGAAATTTTTCTTCAGTGGATGACAATGGCG
ATGTAGATATGGAATGCCAAGGGGCAAGATGCAATACCATGAATCAACAG
CGAAAAATGTTACTGGATGAATGTTTTTGCAGCTACCATTCTTTACAACA
ACAACATAATAATTTAACGCAAAAACTTCAACATTTGGAAGTTCATAACA
GATGTCAACAACGGTCACATCAATCACATCATGAATCAGGAAGTTGAAAT
GGAGGAGTGAGCTCAATCACAAAATCAAAATCAACAACAGATGCAAGTTG
CTGAGAAATCACTGATATCAACAAAACCTTGTGTGCGCTGTATGAATGGA
GAACCTCGTGCAAAATCCAATGAAGTCCAAGTAAATGGAAATGCAAACTT
TTCACGAATGAGGAGCTTATAAATGGAAATTATCATCATCAACACCAAAA
TGTAACACCACTACCAAATGGGGGTAAAAAGAGAAATTTTTCTTCAGTGG
ATGACAATGGCGATGTAGATATGGAATGCCAAGGGGCAAGATGCAATACC
ATGAATCAACAGCGAAAAATGTTACTGGATGAATGTTTTTGCAGCTACCA
TTCTTTACAACAACAACATAATAATTTAACGCAAAAACTTCAACATTTGG
AAGTTCATAACAGATGTCAACAACGGTCACATCAATCACATCATGAATCA
GGAAGTTGAAATGGAGGAGTGAGCTCAATCACAAAATCAAAATCAACAAC
AGATGCAAGTTGCTGAGAAATCACTGATATCAACAAAACCTTGTGTGCGC
TGTATGAATGGAGAACCTCGTGCAAAATCCAATGAAGTCCAAGTAAATGG
AAATGCAAACTTTTCACGAATGAGGAGCTTATAAATGGAAATTATCATCA
TCAACACCAAAATGTAACACCACTACCAAATGGGGGTAAAAAGAGAAATT
TTTCTTCAGTGGATGACAATGGCGATGTAGATATGGAATGCCAAGGGGCA
AGATGCAATACCATGAATCAACAGCGAAAAATGTTACTGGATGAATGTTT
TTGCAGCTACCATTCTTTACAACAACAACATAATAATTTAACGCAAAAAC
TTCAACATTTGGAAGTTCATAACAGATGTCAACAACGGTCACATCAATCA
CATCATGAATCAGGAAGTTGAAATGGAGGAGTGAGCTCAATCACAAAATC
AAAATCAACAACAGATGCAAGTTGCTGAGAAATCACTGATATCAACAAAA
CCTTGTGTGCGCTGTATGAATGGAGAACCTCGTGCAAAATCCAATGAAGT
CCAAGTAAATGGAAATGCAAACTTTTCACGAATGAGGAGCTTATAAATGG
AAATTATCATCATCAACACCAAAATGTAACACCACTACCAAATGGGGGTA
AAAAGAGAAATTTTTCTTCAGTGGATGACAATGGCGATGTAGATATGGAA
TGCCAAGGGGCAAGATGCAATACCATGAATCAACAGCGAAAAATGTTACT
GGATGAATGTTTTTGCAGCTACCATTCTTTACAACAACAACATAATAATT
TAACGCAAAAACTTCAACATTTGGAAGTTCATAACAGATGTCAACAACGG
TCACATCAATCACATCATGAATCAGGAAGTTGAAATGGAGGAGTGAGCTC
AATCACAAAATCAAAATCAACAACAGATGCAAGTTGCTGAGAAATCACTG
ATATCAACAAAACCTTGTGTGCGCTGTATGAATGGAGAACCTCGTGCAAA
ATCCAATGAAGTCCAAGTAAATGGAAATGCAAACTTTTCACGAATGAGGA
GCTTATAAATGGAAATTATCATCATCAACACCAAAATGTAACACCACTAC
CAAATGGGGGTAAAAAGAGAAATTTTTCTTCAGTGGATGACAATGGCGAT
GTAGATATGGAATGCCAAGGGGCAAGATGCAATACCATGAATCAACAGCG
AAAAATGTTACTGGATGAATGTTTTTGCAGCTACCATTCTTTACAACAAC
AACATAATAATTTAACGCAAAAACTTCAACATTTGGAAGTTCATAACAGA
TGTCAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035760XLOC_035760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056775-exon-scaffold_282-1575043694:195079..195348TCONS_00056775-exon-scaffold_282-1575043694:195079..195348Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1575043694:194851..195008TCONS_00056775-exon-scaffold_282-1575043694:194851..195008Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1575043694:194537..194590TCONS_00056775-exon-scaffold_282-1575043694:194537..194590Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1575043694:194345..194440TCONS_00056775-exon-scaffold_282-1575043694:194345..194440Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1575043694:193581..194175TCONS_00056775-exon-scaffold_282-1575043694:193581..194175Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1510915933:195079..195348TCONS_00056775-exon-scaffold_282-1510915933:195079..195348Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1510915933:194851..195008TCONS_00056775-exon-scaffold_282-1510915933:194851..195008Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1510915933:194537..194590TCONS_00056775-exon-scaffold_282-1510915933:194537..194590Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1510915933:194345..194440TCONS_00056775-exon-scaffold_282-1510915933:194345..194440Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1510915933:193581..194175TCONS_00056775-exon-scaffold_282-1510915933:193581..194175Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1491911889:195079..195348TCONS_00056775-exon-scaffold_282-1491911889:195079..195348Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1491911889:194851..195008TCONS_00056775-exon-scaffold_282-1491911889:194851..195008Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1491911889:194537..194590TCONS_00056775-exon-scaffold_282-1491911889:194537..194590Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1491911889:194345..194440TCONS_00056775-exon-scaffold_282-1491911889:194345..194440Clytia hemisphaericaexon
TCONS_00056775-exon-scaffold_282-1491911889:193581..194175TCONS_00056775-exon-scaffold_282-1491911889:193581..194175Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056775-proteinTCONS_00056775-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:193581..195348 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.9555	52.0456	20.9996	15.0626	41.6553	29.2963	35.8116	36.5481	26.8155	23.0409	21.7488	21.1061	18.5383	16.1698	25.7086	21.0234	34.9896	30.108	18.1802	17.0718	27.4375	25.1367	42.4239	38.4996	28.7487	29.8684	24.7531	20.8162	22.383	24.4693
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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