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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056731 ID=TCONS_00056731|Name=TCONS_00056731|organism=Clytia hemisphaerica|type=transcript|length=1642bp
gcaaagttgacagctatggATATATTATCAACCAGTTTTATAGCATGCCA
ATTTGTTAGCATTGCtgcaaaatttgttattttttcaaaacaacaacaaa
aaatattacaacctcaacaaaataaaaatagctttttaaCAACAAATATA
TAGTGATAAAATTAGATTGCAAACGTAAGCAGCAAACTCTTGCAAGGAAT
AGTGAACGATCATGCCTGCCCTTGGTCCAACTATGTAGGGCAATCCCTAT
ATGGAAatgcaaataaaaataatataaatctGGTTGGTTAAACAACAATA
TTGCTACAGTATTTACAGTGTATAAAGTATCTAAATAAAAACCTTTGATA
ATTAAAAAATGCCTTGAATTTTAAATCCCCAATCTGCCCTGCATTGATTT
TTACGTTGTAGTTGAGCATTACAGCAATCCAGGACAGGGTTTAAAGTGCC
TGTGTTTATATAGACATGGTGAAACCagcaaaacctaaaaaaatgaaaaa
atcctttctcttctttgaaagaaatcttttcaaaaatgtgtTGCTTTCAC
TCCTCCATTTCAACTTCCTGATTCATGATGTGATTGATGTGACcctaaaa
aataacaaagattAGTATTTGAGAACTTGTTAGAATATGAAAGAGTGGAA
AGAGATCTTGGAGCAGTTTAAAAAATGTTACAATAGATAGTAAATTATGA
TAAACAGTCTTTTTTCTCATatgttttgtttagaaaaatattttcaaaaa
gagaGCTACATACAGGTTCTCCATTCATACAGCGCACACAAGGTTTTGTT
GATATCAGTGATTTCTCAGCAACTTGCATCTgttgttgattttgattttg
tgaTTGAGCCTAAAGAACAGAGATTTCGATTTGCTAAAATAGACCAGAAA
ACTAtgataaaaaagttttgttttaagtactaaaaaaaataaacaaaagt
tgTACCATTCGTGAAAAGTTTGCATTTCCATTTACTTGGACTTCATTGGA
TTTTGCAcgctgaaaataaaattttggttcaatATAATTAGCAAACTTAT
TTTGATACGTGAATAGTCAGATAAAGAAATACAACACAATTATCTTTTGA
ATAACACATTCAAATAAAGTAGCCAAATACAGCCAGTAGCCAAAGCATAA
TTCCCATTGTATTTATAGTCATCCAGAGGATTTCCAATCATTGGTGTTAT
AACAAAATGCTATCTGTGTAGAATTTTCTCAAAGTAAATATATGGGAATT
GatggaaaacaaaaaatacttttcGCTGTTGATTCATGGTATTGCATCTT
GCCCCTTGGCATTCCATATCTACATCGCCATTGTCATCCACTGaagaaaa
atttctctttttaccCCCATTTGGTAGTGGTGTTACATTTTGGTGTTGAT
GATGATAATTTCCATTTATAAGCTCATGTTGTTGACATCTGTTATGAACT
TCCAAATGTTGAAGTTTTTGCGTTAAATTATTATGTTGTTGTTGTAAAGA
ATGGTAGCTGCAAAAACATTCATCCAGTAACATCCTCACAGTCTTGACTT
TATTTCAAAGTGTTTGATTTACTCTGCTGTGTGCAAGAAAAGTATAATAT
GTATAATATCCATTATTTGACGCAATGGAGCATAAACTCCAG Run BLAST on NCBI transcript from alignment at scaffold_282:193582..195293+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056731 ID=TCONS_00056731|Name=TCONS_00056731|organism=Clytia hemisphaerica|type=transcript|length=1712bp|location=Sequence derived from alignment at scaffold_282:193582..195293+ (Clytia hemisphaerica)
gcaaagttgacagctatggATATATTATCAACCAGTTTTATAGCATGCCA
ATTTGTTAGCATTGCtgcaaaatttgttattttttcaaaacaacaacaaa
aaatattacaacctcaacaaaataaaaatagctttttaaCAACAAATATA
TAGTGATAAAATTAGATTGCAAACGTAAGCAGCAAACTCTTGCAAGGAAT
AGTGAACGATCATGCCTGCCCTTGGTCCAACTATGTAGGGCAATCCCTAT
ATGGAAatgcaaataaaaataatataaatctGGTTGGTTAAACAACAATA
TTGCTACAGTATTTACAGTGTATAAAGTATCTAAATAAAAACCTTTGATA
ATTAAAAAATGCCTTGAATTTTAAATCCCCAATCTGCCCTGCATTGATTT
TTACGTTGTAGTTGAGCATTACAGCAATCCAGGACAGGGTTTAAAGTGCC
TGTGTTTATATAGACATGGTGAAACCagcaaaacctaaaaaaatgaaaaa
atcctttctcttctttgaaagaaatcttttcaaaaatgtgtTGCTTTCAC
TCCTCCATTTCAACTTCCTGATTCATGATGTGATTGATGTGACcctaaaa
aataacaaagattAGTATTTGAGAACTTGTTAGAATATGAAAGAGTGGAA
AGAGATCTTGGAGCAGTTTAAAAAATGTTACAATAGATAGTAAATTATGA
TAAACAGTCTTTTTTCTCATatgttttgtttagaaaaatattttcaaaaa
gagaGCTACATACAGGTTCTCCATTCATACAGCGCACACAAGGTTTTGTT
GATATCAGTGATTTCTCAGCAACTTGCATCTgttgttgattttgattttg
tgaTTGAGCCTAAAGAACAGAGATTTCGATTTGCTAAAATAGACCAGAAA
ACTAtgataaaaaagttttgttttaagtactaaaaaaaataaacaaaagt
tgTACCATTCGTGAAAAGTTTGCATTTCCATTTACTTGGACTTCATTGGA
TTTTGCAcgctgaaaataaaattttggttcaatATAATTAGCAAACTTAT
TTTGATACGTGAATAGTCAGATAAAGAAATACAACACAATTATCTTTTGA
ATAACACATTCAAATAAAGTAGCCAAATACAGCCAGTAGCCAAAGCATAA
TTCCCATTGTATTTATAGTCATCCAGAGGATTTCCAATCATTGGTGTTAT
AACAAAATGCTATCTGTGTAGAATTTTCTCAAAGTAAATATATGGGAATT
GatggaaaacaaaaaatacttttcGCTGTTGATTCATGGTATTGCATCTT
GCCCCTTGGCATTCCATATCTACATCGCCATTGTCATCCACTGaagaaaa
atttctctttttaccCCCATTTGGTAGTGGTGTTACATTTTGGTGTTGAT
GATGATAATTTCCATTTATAAGCTCCTGTTGTTGACATCTGTTATGAACT
NGTTACATTTTGGTGTTGATGATGATAATTTCCATTTATAAGCTCATGTT
GTTGACATCTGTTATGAACTTCCAAATGTTGAAGTTTTTGCGTTAAATTA
TTATGTTGTTGTTGTAAAGAATGGTAGCTGCAAAAACATTCATCCAGTAA
CATCCTCACAGTCTTGACTTTATTTCAAAGTGTTTGATTTACTCTGCTGT
GTGCAAGAAAAGTATAATATGTATAATATCCATTATTTGACGCAATGGAG
CATAAACTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056731-exon-scaffold_282-1491911889:193582..194967 | TCONS_00056731-exon-scaffold_282-1491911889:193582..194967 | Clytia hemisphaerica | exon |
| TCONS_00056731-exon-scaffold_282-1510915933:193582..194967 | TCONS_00056731-exon-scaffold_282-1510915933:193582..194967 | Clytia hemisphaerica | exon |
| TCONS_00056731-exon-scaffold_282-1575043694:193582..194967 | TCONS_00056731-exon-scaffold_282-1575043694:193582..194967 | Clytia hemisphaerica | exon |
| TCONS_00056731-exon-scaffold_282-1491911889:195038..195293 | TCONS_00056731-exon-scaffold_282-1491911889:195038..195293 | Clytia hemisphaerica | exon |
| TCONS_00056731-exon-scaffold_282-1510915933:195038..195293 | TCONS_00056731-exon-scaffold_282-1510915933:195038..195293 | Clytia hemisphaerica | exon |
| TCONS_00056731-exon-scaffold_282-1575043694:195038..195293 | TCONS_00056731-exon-scaffold_282-1575043694:195038..195293 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:193582..195293 + |
Blast
The following BLAST results are available for this feature:
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